Wall clock time and date at job start Tue Mar 31 2020 12:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38289 * 119.93791 * 2 1 4 4 C 1.38125 * 120.05202 * 180.25765 * 3 2 1 5 5 C 1.38755 * 119.93999 * 359.48967 * 4 3 2 6 6 O 1.35906 * 120.05296 * 180.27973 * 5 4 3 7 7 C 1.42901 * 117.00155 * 359.97438 * 6 5 4 8 8 C 1.52991 * 109.47372 * 180.02562 * 7 6 5 9 9 C 1.50707 * 109.47416 * 180.02562 * 8 7 6 10 10 O 1.20825 * 119.99303 * 0.02562 * 9 8 7 11 11 O 1.34225 * 120.00295 * 179.97438 * 9 8 7 12 12 C 1.45195 * 117.00307 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47381 * 180.02562 * 12 11 9 14 14 O 1.21296 * 119.99974 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00100 * 180.02562 * 13 12 11 16 16 C 1.37101 * 120.00147 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99864 * 0.02562 * 16 15 13 18 18 C 1.38947 * 120.00081 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99951 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99964 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47098 * 60.00558 * 20 18 16 22 22 H 1.48498 * 109.47146 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47395 * 300.00279 * 20 18 16 24 24 C 1.38709 * 119.89505 * 0.25905 * 5 4 3 25 25 C 1.38167 * 119.93745 * 359.97438 * 24 5 4 26 26 C 1.50702 * 119.96727 * 180.02562 * 25 24 5 27 27 H 1.08995 * 109.47080 * 270.24804 * 1 2 3 28 28 H 1.08993 * 109.47243 * 30.25404 * 1 2 3 29 29 H 1.09001 * 109.46983 * 150.25353 * 1 2 3 30 30 H 1.07995 * 119.98087 * 0.02562 * 3 2 1 31 31 H 1.08002 * 120.03152 * 179.77429 * 4 3 2 32 32 H 1.09003 * 109.47208 * 300.00726 * 7 6 5 33 33 H 1.09006 * 109.47043 * 60.00389 * 7 6 5 34 34 H 1.09003 * 109.47447 * 300.00457 * 8 7 6 35 35 H 1.09003 * 109.47081 * 60.00580 * 8 7 6 36 36 H 1.08997 * 109.46898 * 300.00351 * 12 11 9 37 37 H 1.08999 * 109.47015 * 59.99918 * 12 11 9 38 38 H 0.97005 * 119.99788 * 0.02562 * 15 13 12 39 39 H 0.97001 * 119.99973 * 180.02562 * 19 18 16 40 40 H 1.07993 * 120.02876 * 180.02562 * 24 5 4 41 41 H 1.08996 * 109.47216 * 90.00423 * 26 25 24 42 42 H 1.09001 * 109.47177 * 210.00403 * 26 25 24 43 43 H 1.09001 * 109.47352 * 329.99926 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1972 1.1984 0.0000 4 6 3.5784 1.2011 -0.0054 5 6 4.2734 0.0002 -0.0001 6 8 5.6324 0.0002 0.0004 7 6 6.2812 1.2735 -0.0053 8 6 7.7979 1.0731 -0.0045 9 6 8.4821 2.4159 -0.0099 10 8 7.8239 3.4292 -0.0135 11 8 9.8225 2.4863 -0.0096 12 6 10.4130 3.8127 -0.0144 13 6 11.9153 3.6938 -0.0140 14 8 12.4370 2.5987 -0.0096 15 7 12.6792 4.8041 -0.0175 16 6 14.0459 4.6960 -0.0166 17 1 14.5104 3.7210 -0.0136 18 6 14.8335 5.8407 -0.0208 19 7 14.2682 7.0271 -0.0250 20 14 16.6956 5.6933 -0.0203 21 1 17.1338 4.9521 -1.2302 22 1 17.2996 7.0499 -0.0246 23 1 17.1339 4.9607 1.1948 24 6 3.5788 -1.2005 0.0052 25 6 2.1971 -1.1978 0.0057 26 6 1.4418 -2.5019 0.0120 27 1 -0.3633 0.0044 1.0276 28 1 -0.3633 0.8876 -0.5177 29 1 -0.3633 -0.8923 -0.5099 30 1 1.6559 2.1329 0.0004 31 1 4.1171 2.1372 -0.0091 32 1 5.9885 1.8264 -0.8979 33 1 5.9880 1.8346 0.8820 34 1 8.0909 0.5200 0.8879 35 1 8.0908 0.5122 -0.8921 36 1 10.0917 4.3502 -0.9065 37 1 10.0911 4.3569 0.8734 38 1 12.2620 5.6799 -0.0199 39 1 14.8180 7.8262 -0.0283 40 1 4.1175 -2.1365 0.0097 41 1 1.2600 -2.8115 1.0411 42 1 0.4894 -2.3726 -0.5022 43 1 2.0296 -3.2647 -0.4986 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731241421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:18 Heat of formation + Delta-G solvation = -147.114646 kcal Electronic energy + Delta-G solvation = -24970.992785 eV Core-core repulsion = 20981.404549 eV Total energy + Delta-G solvation = -3989.588236 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71120 -40.29266 -38.42803 -38.09939 -36.25814 -34.02637 -33.27506 -32.73027 -31.69028 -31.38758 -28.59301 -27.84953 -26.30948 -25.14701 -24.23999 -22.47888 -21.02680 -20.47828 -19.61846 -18.37930 -18.10223 -17.35163 -16.98099 -16.55060 -16.17824 -16.03532 -15.64039 -15.35525 -14.68771 -14.59483 -14.39128 -14.23095 -14.06724 -13.90937 -13.53552 -13.20478 -13.14078 -12.93895 -12.72765 -12.32671 -12.29772 -12.14461 -11.87552 -11.79164 -11.63637 -11.55869 -11.12917 -11.03055 -10.89292 -10.57658 -10.50245 -10.48542 -10.30669 -9.61638 -9.09067 -8.55446 -8.31004 -8.10521 -6.51848 -3.94108 1.02049 1.12959 2.17463 2.26317 3.14250 3.19318 3.22200 3.29120 3.41387 3.71017 4.10196 4.32002 4.45903 4.51253 4.62445 4.64705 4.70809 4.80954 4.87488 4.99803 5.02161 5.12538 5.12697 5.15116 5.28206 5.35197 5.39080 5.43347 5.47026 5.48769 5.50863 5.65131 5.70348 5.78332 6.01799 6.03729 6.10751 6.34455 6.49771 6.53289 7.12126 7.45807 7.72060 7.92354 8.46071 9.04902 9.36746 9.86615 10.65192 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.050768 B = 0.001599 C = 0.001553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.396891 B =17505.364542 C =18020.407314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.129 4.129 3 C -0.076 4.076 4 C -0.209 4.209 5 C 0.132 3.868 6 O -0.314 6.314 7 C 0.073 3.927 8 C -0.113 4.113 9 C 0.467 3.533 10 O -0.516 6.516 11 O -0.322 6.322 12 C 0.061 3.939 13 C 0.437 3.563 14 O -0.576 6.576 15 N -0.551 5.551 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.026 3.974 19 N -0.897 5.897 20 Si 0.935 3.065 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.272 1.272 24 C -0.150 4.150 25 C -0.050 4.050 26 C -0.118 4.118 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.124 0.876 31 H 0.131 0.869 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.395 0.605 39 H 0.275 0.725 40 H 0.131 0.869 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.647 -12.464 0.069 29.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.129 4.129 3 C -0.094 4.094 4 C -0.227 4.227 5 C 0.087 3.913 6 O -0.228 6.228 7 C -0.003 4.003 8 C -0.151 4.151 9 C 0.309 3.691 10 O -0.406 6.406 11 O -0.236 6.236 12 C -0.017 4.017 13 C 0.222 3.778 14 O -0.460 6.460 15 N -0.189 5.189 16 C -0.433 4.433 17 H 0.124 0.876 18 C -0.177 4.177 19 N -0.537 5.537 20 Si 0.762 3.238 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.197 1.197 24 C -0.169 4.169 25 C -0.050 4.050 26 C -0.174 4.174 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.142 0.858 31 H 0.149 0.851 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -26.215 -12.836 0.070 29.189 hybrid contribution 0.707 1.140 0.011 1.341 sum -25.508 -11.697 0.081 28.062 Atomic orbital electron populations 1.20783 0.91220 1.02669 1.02139 1.19670 0.96113 0.92510 1.04584 1.20823 0.93284 0.97639 0.97672 1.21333 0.95459 0.97356 1.08589 1.18919 0.81937 0.94122 0.96296 1.85961 1.16573 1.31621 1.88677 1.22451 0.90809 0.83657 1.03350 1.21038 0.92639 0.93478 1.07945 1.23204 0.81716 0.91513 0.72618 1.90674 1.66136 1.37676 1.46122 1.86537 1.20653 1.33738 1.82649 1.22785 0.94080 0.81178 1.03609 1.19305 0.86462 0.85947 0.86133 1.90568 1.73801 1.26348 1.55278 1.41697 1.06758 1.06678 1.63737 1.19689 0.80235 0.95012 1.48392 0.87631 1.25314 1.01081 0.94488 0.96799 1.69607 1.36969 0.97661 1.49487 0.85846 0.81475 0.77288 0.79209 1.19739 1.20857 1.19743 1.20267 0.93042 0.96348 1.07198 1.19521 0.92508 0.95133 0.97880 1.20876 1.00102 0.93812 1.02601 0.91450 0.91805 0.91316 0.85765 0.85106 0.90754 0.90752 0.86259 0.86254 0.89421 0.89414 0.77147 0.91554 0.85138 0.90864 0.90923 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 9.60 36.01 0.35 -0.28 16 2 C -0.13 -1.06 5.88 -104.60 -0.62 -1.68 16 3 C -0.08 -0.67 9.69 -39.60 -0.38 -1.05 16 4 C -0.21 -2.08 9.04 -39.43 -0.36 -2.43 16 5 C 0.13 1.42 6.69 -39.22 -0.26 1.16 16 6 O -0.31 -3.47 10.14 -19.44 -0.20 -3.67 16 7 C 0.07 0.75 4.03 37.15 0.15 0.90 16 8 C -0.11 -1.20 6.18 -27.88 -0.17 -1.38 16 9 C 0.47 6.83 7.96 36.01 0.29 7.12 16 10 O -0.52 -8.38 15.73 -18.75 -0.29 -8.67 16 11 O -0.32 -5.78 9.75 -45.89 -0.45 -6.23 16 12 C 0.06 1.14 5.94 36.00 0.21 1.35 16 13 C 0.44 10.45 7.86 -10.99 -0.09 10.36 16 14 O -0.58 -15.93 16.08 -14.12 -0.23 -16.16 16 15 N -0.55 -13.85 5.29 -10.96 -0.06 -13.90 16 16 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 17 H 0.11 3.02 7.16 -52.49 -0.38 2.64 16 18 C 0.03 0.68 5.50 -17.47 -0.10 0.58 16 19 N -0.90 -23.89 13.05 55.50 0.72 -23.17 16 20 Si 0.94 20.60 29.55 -169.99 -5.02 15.58 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 24 C -0.15 -1.44 9.64 -39.43 -0.38 -1.82 16 25 C -0.05 -0.42 5.88 -104.65 -0.62 -1.04 16 26 C -0.12 -0.66 9.60 36.01 0.35 -0.31 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 5.94 -51.93 -0.31 0.01 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 32 H 0.07 0.76 7.62 -51.93 -0.40 0.36 16 33 H 0.07 0.76 7.62 -51.93 -0.40 0.36 16 34 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 35 H 0.12 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 37 H 0.09 1.48 8.13 -51.93 -0.42 1.06 16 38 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 39 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 40 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.07 0.32 5.94 -51.93 -0.31 0.02 16 43 H 0.07 0.34 8.08 -51.93 -0.42 -0.08 16 LS Contribution 371.99 15.07 5.61 5.61 Total: -1.00 -32.77 371.99 -7.48 -40.25 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -5.79 Total: 7.39 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -1.77 Total: 2.98 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: 0.67 Total: -37.07 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.17 Total: -34.74 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.77 -7.48 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731241421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.860 kcal (2) G-P(sol) polarization free energy of solvation -32.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds