Wall clock time and date at job start Tue Mar 31 2020 13:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 C 1.52998 * 109.46651 * 240.00211 * 2 1 3 5 5 C 1.52991 * 109.47085 * 120.00241 * 2 1 3 6 6 H 1.09000 * 109.47205 * 299.99977 * 5 2 1 7 7 N 1.46498 * 109.47234 * 59.99931 * 5 2 1 8 8 C 1.34780 * 119.99715 * 204.99728 * 7 5 2 9 9 O 1.21584 * 120.00344 * 0.02562 * 8 7 5 10 10 C 1.47542 * 119.99606 * 179.97438 * 8 7 5 11 11 C 1.39663 * 120.19563 * 0.02562 * 10 8 7 12 12 C 1.37837 * 119.91775 * 179.97438 * 11 10 8 13 13 C 1.38574 * 120.32020 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.40344 * 359.97438 * 13 12 11 15 15 C 1.38829 * 120.07257 * 0.02562 * 14 13 12 16 16 O 1.35522 * 120.15989 * 179.97438 * 15 14 13 17 17 C 1.34812 * 117.00136 * 354.39845 * 16 15 14 18 18 H 1.07998 * 119.99529 * 5.06496 * 17 16 15 19 19 C 1.38692 * 120.00205 * 185.06446 * 17 16 15 20 20 N 1.31514 * 120.00382 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99786 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46951 * 90.00022 * 21 19 17 23 23 H 1.48500 * 109.46957 * 209.99559 * 21 19 17 24 24 H 1.48493 * 109.47297 * 329.99896 * 21 19 17 25 25 C 1.50702 * 109.47130 * 179.97438 * 5 2 1 26 26 O 1.20826 * 120.00071 * 239.99897 * 25 5 2 27 27 O 1.34231 * 119.99934 * 59.99677 * 25 5 2 28 28 H 1.08993 * 109.46532 * 300.00097 * 1 2 3 29 29 H 1.08999 * 109.47024 * 59.99763 * 1 2 3 30 30 H 1.09000 * 109.46681 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46931 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47458 * 299.99971 * 3 2 1 33 33 H 1.09000 * 109.46996 * 60.00242 * 3 2 1 34 34 H 1.09000 * 109.47605 * 299.99468 * 4 2 1 35 35 H 1.08999 * 109.47385 * 60.00248 * 4 2 1 36 36 H 1.09008 * 109.46833 * 180.02562 * 4 2 1 37 37 H 0.96993 * 120.00322 * 25.00057 * 7 5 2 38 38 H 1.07996 * 120.04374 * 359.95841 * 11 10 8 39 39 H 1.07993 * 119.83964 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.79401 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.96323 * 179.74829 * 14 13 12 42 42 H 0.97002 * 120.00488 * 179.97438 * 20 19 17 43 43 H 0.96699 * 116.99834 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 1.6767 -0.2075 2.1391 7 7 1.5517 -2.1025 1.2491 8 6 1.4231 -2.7717 2.4119 9 8 1.7119 -2.2290 3.4609 10 6 0.9307 -4.1626 2.4119 11 6 0.5973 -4.7897 1.2094 12 6 0.1384 -6.0894 1.2160 13 6 0.0063 -6.7786 2.4109 14 6 0.3330 -6.1720 3.6069 15 6 0.7968 -4.8636 3.6195 16 8 1.1175 -4.2661 4.7928 17 6 0.8548 -4.9542 5.9220 18 1 0.4847 -5.9671 5.8632 19 6 1.0597 -4.3614 7.1589 20 7 0.8029 -5.0324 8.2605 21 14 1.6992 -2.6091 7.2604 22 1 0.5536 -1.6642 7.2748 23 1 2.4933 -2.4432 8.5042 24 1 2.5588 -2.3268 6.0829 25 6 3.5471 -0.7218 1.2488 26 8 4.1508 -1.7684 1.2488 27 8 4.2187 0.4404 1.2485 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7216 -1.2491 37 1 1.3210 -2.5353 0.4123 38 1 0.6987 -4.2569 0.2754 39 1 -0.1194 -6.5730 0.2854 40 1 -0.3537 -7.7968 2.4061 41 1 0.2234 -6.7144 4.5344 42 1 0.9466 -4.6179 9.1256 43 1 5.1843 0.3894 1.2479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000736257653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:53 Heat of formation + Delta-G solvation = -126.400204 kcal Electronic energy + Delta-G solvation = -28191.015669 eV Core-core repulsion = 24202.325679 eV Total energy + Delta-G solvation = -3988.689990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.95709 -39.61772 -38.41190 -37.23655 -36.52988 -36.10211 -33.33886 -32.45507 -30.72236 -29.21150 -28.08200 -27.62802 -27.10106 -25.27974 -23.39346 -22.09795 -21.24442 -20.15220 -19.56830 -18.07628 -17.92552 -17.87426 -16.80951 -16.45782 -15.89999 -15.78195 -14.79886 -14.56007 -14.37083 -14.20298 -14.00454 -13.92594 -13.78971 -13.61982 -13.51894 -13.04639 -12.80777 -12.40730 -12.36148 -12.22894 -12.16694 -11.95056 -11.58360 -11.42093 -11.29143 -11.17868 -11.00920 -10.90647 -10.81705 -10.72678 -10.54445 -10.05823 -9.65596 -9.16504 -8.99061 -8.89184 -8.39822 -7.48628 -6.47496 -4.12313 1.54919 2.18726 2.25057 2.78000 3.30963 3.36645 3.41578 3.63578 3.66143 4.24678 4.35290 4.50790 4.53194 4.64878 4.72994 5.01261 5.08515 5.17073 5.20717 5.34058 5.36691 5.43150 5.48454 5.53451 5.63985 5.65339 5.68825 5.77806 5.90807 5.95910 6.03058 6.04746 6.21430 6.36577 6.48544 6.49363 6.57671 6.81560 6.99441 7.14172 7.47421 7.65236 7.81578 7.91637 7.94513 8.75769 8.88173 9.51197 10.57601 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.004907 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.460176 B = 5704.187328 C = 7142.880682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.069 4.069 3 C -0.151 4.151 4 C -0.148 4.148 5 C 0.170 3.830 6 H 0.125 0.875 7 N -0.719 5.719 8 C 0.568 3.432 9 O -0.514 6.514 10 C -0.224 4.224 11 C -0.039 4.039 12 C -0.220 4.220 13 C -0.050 4.050 14 C -0.226 4.226 15 C 0.202 3.798 16 O -0.165 6.165 17 C -0.396 4.396 18 H 0.109 0.891 19 C 0.072 3.928 20 N -0.869 5.869 21 Si 0.899 3.101 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.239 1.239 25 C 0.465 3.535 26 O -0.499 6.499 27 O -0.513 6.513 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.400 0.600 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.139 0.861 42 H 0.282 0.718 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.481 9.705 -19.609 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.070 4.070 3 C -0.209 4.209 4 C -0.206 4.206 5 C 0.061 3.939 6 H 0.143 0.857 7 N -0.375 5.375 8 C 0.360 3.640 9 O -0.389 6.389 10 C -0.229 4.229 11 C -0.058 4.058 12 C -0.239 4.239 13 C -0.068 4.068 14 C -0.245 4.245 15 C 0.144 3.856 16 O -0.065 6.065 17 C -0.471 4.471 18 H 0.126 0.874 19 C -0.133 4.133 20 N -0.505 5.505 21 Si 0.724 3.276 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.162 1.162 25 C 0.305 3.695 26 O -0.384 6.384 27 O -0.325 6.325 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.100 0.900 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.237 0.763 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.156 0.844 42 H 0.092 0.908 43 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.542 10.035 -18.462 21.020 hybrid contribution 0.819 0.109 -0.103 0.833 sum 1.360 10.144 -18.565 21.199 Atomic orbital electron populations 1.21870 0.92630 1.02804 1.02478 1.20762 0.97162 0.96357 0.92671 1.22085 1.03269 0.93320 1.02188 1.21978 1.01152 1.00394 0.97051 1.20431 0.85840 0.85597 1.01991 0.85738 1.45706 1.68837 1.12845 1.10145 1.18245 0.76923 0.86038 0.82844 1.90855 1.48684 1.68619 1.30774 1.18727 1.17529 0.94256 0.92371 1.20736 0.95317 0.94716 0.94987 1.20533 1.10216 0.95592 0.97585 1.20970 0.95183 0.98552 0.92114 1.21282 1.08264 0.95577 0.99382 1.19005 0.90111 0.90556 0.85879 1.83778 1.68299 1.42871 1.11576 1.20928 1.45384 0.99479 0.81288 0.87400 1.24481 0.95348 1.00056 0.93430 1.69634 1.44895 1.38103 0.97826 0.86216 0.80419 0.82407 0.78576 1.19887 1.21209 1.16218 1.24198 0.92354 0.81196 0.71772 1.90740 1.70120 1.33242 1.44344 1.84630 1.26198 1.35906 1.85747 0.91887 0.91871 0.91894 0.89998 0.92119 0.92009 0.92275 0.91374 0.92599 0.76256 0.86998 0.86937 0.86770 0.84367 0.90819 0.73946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.32 37.16 0.31 -0.88 16 2 C -0.07 -0.63 0.59 -154.51 -0.09 -0.73 16 3 C -0.15 -1.22 7.95 37.16 0.30 -0.93 16 4 C -0.15 -1.22 8.06 37.16 0.30 -0.92 16 5 C 0.17 2.28 1.79 -69.09 -0.12 2.15 16 6 H 0.13 1.84 7.58 -51.93 -0.39 1.45 16 7 N -0.72 -10.90 3.78 -55.98 -0.21 -11.12 16 8 C 0.57 11.75 7.59 -12.47 -0.09 11.65 16 9 O -0.51 -12.92 14.83 -16.56 -0.25 -13.17 16 10 C -0.22 -4.64 5.89 -104.81 -0.62 -5.26 16 11 C -0.04 -0.63 9.54 -39.20 -0.37 -1.00 16 12 C -0.22 -3.44 10.03 -39.60 -0.40 -3.83 16 13 C -0.05 -0.85 10.03 -39.54 -0.40 -1.25 16 14 C -0.23 -4.81 9.16 -39.44 -0.36 -5.17 16 15 C 0.20 4.85 6.66 -38.60 -0.26 4.60 16 16 O -0.17 -4.61 6.67 -21.06 -0.14 -4.75 16 17 C -0.40 -11.43 9.95 30.90 0.31 -11.12 16 18 H 0.11 3.09 5.44 -52.49 -0.29 2.81 16 19 C 0.07 2.10 5.49 -17.52 -0.10 2.01 16 20 N -0.87 -25.41 13.96 55.48 0.77 -24.64 16 21 Si 0.90 23.47 28.62 -169.99 -4.86 18.60 16 22 H -0.27 -7.05 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.24 -6.66 7.11 56.52 0.40 -6.25 16 25 C 0.47 6.72 6.33 36.01 0.23 6.95 16 26 O -0.50 -9.13 17.08 -18.75 -0.32 -9.45 16 27 O -0.51 -5.40 10.34 -39.26 -0.41 -5.80 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.56 7.45 -51.93 -0.39 0.17 16 31 H 0.08 0.69 5.33 -51.93 -0.28 0.41 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.48 6.51 -51.93 -0.34 0.14 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.05 0.51 7.22 -51.92 -0.37 0.13 16 37 H 0.40 4.92 4.68 -40.82 -0.19 4.73 16 38 H 0.11 1.38 6.40 -52.49 -0.34 1.04 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.14 3.05 5.64 -52.49 -0.30 2.75 16 42 H 0.28 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.40 2.73 9.10 45.56 0.41 3.14 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -35.86 354.43 -6.00 -41.86 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -4.56 Total: 6.86 kcal Atomic # 6 Polarization: -2.37 SS G_CDS: -1.37 Total: -3.74 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: 0.56 Total: -35.75 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.11 Total: -33.17 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.86 Total: 18.60 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.86 -6.00 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736257653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.538 kcal (2) G-P(sol) polarization free energy of solvation -35.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds