Wall clock time and date at job start Tue Mar 31 2020 13:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52997 * 109.46936 * 2 1 4 4 C 1.52998 * 109.46651 * 240.00211 * 2 1 3 5 5 C 1.52991 * 109.47085 * 120.00241 * 2 1 3 6 6 H 1.09000 * 109.47205 * 299.99977 * 5 2 1 7 7 N 1.46498 * 109.47234 * 59.99931 * 5 2 1 8 8 C 1.34780 * 119.99715 * 204.99728 * 7 5 2 9 9 O 1.21584 * 120.00344 * 0.02562 * 8 7 5 10 10 C 1.47542 * 119.99606 * 179.97438 * 8 7 5 11 11 C 1.39663 * 120.19563 * 0.02562 * 10 8 7 12 12 C 1.37837 * 119.91775 * 179.97438 * 11 10 8 13 13 C 1.38574 * 120.32020 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.40344 * 359.97438 * 13 12 11 15 15 C 1.38829 * 120.07257 * 0.02562 * 14 13 12 16 16 O 1.35522 * 120.15989 * 179.97438 * 15 14 13 17 17 C 1.34812 * 117.00136 * 354.39845 * 16 15 14 18 18 H 1.07998 * 119.99529 * 5.06496 * 17 16 15 19 19 C 1.38692 * 120.00205 * 185.06446 * 17 16 15 20 20 N 1.31514 * 120.00382 * 179.97438 * 19 17 16 21 21 Si 1.86810 * 119.99786 * 0.02562 * 19 17 16 22 22 H 1.48504 * 109.46951 * 90.00022 * 21 19 17 23 23 H 1.48500 * 109.46957 * 209.99559 * 21 19 17 24 24 H 1.48493 * 109.47297 * 329.99896 * 21 19 17 25 25 C 1.50702 * 109.47130 * 179.97438 * 5 2 1 26 26 O 1.20826 * 120.00071 * 239.99897 * 25 5 2 27 27 O 1.34231 * 119.99934 * 59.99677 * 25 5 2 28 28 H 1.08993 * 109.46532 * 300.00097 * 1 2 3 29 29 H 1.08999 * 109.47024 * 59.99763 * 1 2 3 30 30 H 1.09000 * 109.46681 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46931 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.47458 * 299.99971 * 3 2 1 33 33 H 1.09000 * 109.46996 * 60.00242 * 3 2 1 34 34 H 1.09000 * 109.47605 * 299.99468 * 4 2 1 35 35 H 1.08999 * 109.47385 * 60.00248 * 4 2 1 36 36 H 1.09008 * 109.46833 * 180.02562 * 4 2 1 37 37 H 0.96993 * 120.00322 * 25.00057 * 7 5 2 38 38 H 1.07996 * 120.04374 * 359.95841 * 11 10 8 39 39 H 1.07993 * 119.83964 * 179.97438 * 12 11 10 40 40 H 1.08001 * 119.79401 * 180.02562 * 13 12 11 41 41 H 1.07999 * 119.96323 * 179.74829 * 14 13 12 42 42 H 0.97002 * 120.00488 * 179.97438 * 20 19 17 43 43 H 0.96699 * 116.99834 * 180.02562 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2491 6 1 1.6767 -0.2075 2.1391 7 7 1.5517 -2.1025 1.2491 8 6 1.4231 -2.7717 2.4119 9 8 1.7119 -2.2290 3.4609 10 6 0.9307 -4.1626 2.4119 11 6 0.5973 -4.7897 1.2094 12 6 0.1384 -6.0894 1.2160 13 6 0.0063 -6.7786 2.4109 14 6 0.3330 -6.1720 3.6069 15 6 0.7968 -4.8636 3.6195 16 8 1.1175 -4.2661 4.7928 17 6 0.8548 -4.9542 5.9220 18 1 0.4847 -5.9671 5.8632 19 6 1.0597 -4.3614 7.1589 20 7 0.8029 -5.0324 8.2605 21 14 1.6992 -2.6091 7.2604 22 1 0.5536 -1.6642 7.2748 23 1 2.4933 -2.4432 8.5042 24 1 2.5588 -2.3268 6.0829 25 6 3.5471 -0.7218 1.2488 26 8 4.1508 -1.7684 1.2488 27 8 4.2187 0.4404 1.2485 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1301 -0.7216 -1.2491 37 1 1.3210 -2.5353 0.4123 38 1 0.6987 -4.2569 0.2754 39 1 -0.1194 -6.5730 0.2854 40 1 -0.3537 -7.7968 2.4061 41 1 0.2234 -6.7144 4.5344 42 1 0.9466 -4.6179 9.1256 43 1 5.1843 0.3894 1.2479 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000736257653.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:52 Heat of formation + Delta-G solvation = -151.613857 kcal Electronic energy + Delta-G solvation = -28192.109015 eV Core-core repulsion = 24202.325679 eV Total energy + Delta-G solvation = -3989.783336 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.14901 -41.18300 -39.89623 -38.37491 -38.14872 -37.22347 -34.70624 -34.51116 -32.19240 -30.82204 -29.11124 -28.26613 -27.96447 -27.23337 -24.85736 -23.37777 -22.73185 -21.63594 -20.56263 -19.83562 -19.48366 -19.03837 -18.23753 -17.80104 -17.23793 -16.88008 -16.49784 -16.05984 -16.02344 -15.72167 -15.49019 -15.21682 -14.93765 -14.72696 -14.65379 -14.43377 -14.26936 -14.05396 -13.95757 -13.16905 -13.04866 -12.95892 -12.85894 -12.75480 -12.61524 -12.46179 -12.40836 -12.08348 -11.99445 -11.76230 -11.71594 -11.62889 -11.56681 -10.99093 -10.84729 -10.39275 -9.89522 -9.17381 -8.60107 -6.28550 0.00892 0.62961 1.10475 1.21063 1.26177 1.54526 1.61962 2.01092 2.26861 2.33210 2.74046 2.99885 3.14038 3.38243 3.71097 3.84335 3.93876 4.00077 4.20239 4.22910 4.32471 4.37658 4.46245 4.56810 4.77056 4.78410 4.80223 4.90325 5.01973 5.02794 5.06235 5.10629 5.24595 5.26573 5.31035 5.40266 5.45391 5.51657 5.56949 5.59415 5.67284 5.81690 6.13518 6.45362 6.76802 6.89906 7.24876 7.56631 8.50431 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012534 B = 0.004907 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2233.460176 B = 5704.187328 C = 7142.880682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.059 4.059 3 C -0.150 4.150 4 C -0.148 4.148 5 C 0.161 3.839 6 H 0.106 0.894 7 N -0.695 5.695 8 C 0.562 3.438 9 O -0.568 6.568 10 C -0.234 4.234 11 C -0.030 4.030 12 C -0.187 4.187 13 C -0.040 4.040 14 C -0.250 4.250 15 C 0.162 3.838 16 O -0.210 6.210 17 C -0.403 4.403 18 H 0.093 0.907 19 C 0.028 3.972 20 N -0.910 5.910 21 Si 0.954 3.046 22 H -0.272 1.272 23 H -0.265 1.265 24 H -0.272 1.272 25 C 0.470 3.530 26 O -0.544 6.544 27 O -0.497 6.497 28 H 0.051 0.949 29 H 0.089 0.911 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.094 0.906 36 H 0.045 0.955 37 H 0.416 0.584 38 H 0.163 0.837 39 H 0.169 0.831 40 H 0.153 0.847 41 H 0.116 0.884 42 H 0.286 0.714 43 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.284 10.183 -24.753 26.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.059 4.059 3 C -0.207 4.207 4 C -0.205 4.205 5 C 0.053 3.947 6 H 0.124 0.876 7 N -0.351 5.351 8 C 0.353 3.647 9 O -0.448 6.448 10 C -0.238 4.238 11 C -0.049 4.049 12 C -0.205 4.205 13 C -0.058 4.058 14 C -0.269 4.269 15 C 0.109 3.891 16 O -0.114 6.114 17 C -0.479 4.479 18 H 0.111 0.889 19 C -0.173 4.173 20 N -0.549 5.549 21 Si 0.778 3.222 22 H -0.197 1.197 23 H -0.190 1.190 24 H -0.197 1.197 25 C 0.311 3.689 26 O -0.433 6.433 27 O -0.310 6.310 28 H 0.070 0.930 29 H 0.108 0.892 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.257 0.743 38 H 0.180 0.820 39 H 0.187 0.813 40 H 0.171 0.829 41 H 0.134 0.866 42 H 0.096 0.904 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -0.227 10.534 -23.703 25.940 hybrid contribution 1.017 -0.091 0.971 1.409 sum 0.789 10.443 -22.732 25.029 Atomic orbital electron populations 1.21898 0.91732 1.02882 1.03267 1.20800 0.97711 0.96570 0.90863 1.22092 1.03006 0.92534 1.03105 1.22007 1.00553 1.00779 0.97196 1.20748 0.85600 0.84588 1.03735 0.87611 1.45420 1.67239 1.13370 1.09110 1.18445 0.76449 0.86310 0.83466 1.90835 1.51090 1.69745 1.33093 1.19197 1.17060 0.94664 0.92922 1.21326 0.93230 0.95360 0.94951 1.21244 1.05697 0.94687 0.98895 1.21468 0.93122 1.00236 0.90984 1.21336 1.09882 0.94987 1.00671 1.19762 0.91307 0.92097 0.85984 1.83767 1.71943 1.43638 1.12071 1.20906 1.45397 0.99133 0.82462 0.88939 1.25008 0.96313 1.02505 0.93449 1.69674 1.47901 1.39225 0.98136 0.85445 0.79490 0.79626 0.77652 1.19713 1.18959 1.19714 1.24308 0.92774 0.81244 0.70538 1.90726 1.71042 1.34824 1.46756 1.84591 1.27845 1.33839 1.84754 0.93004 0.89241 0.92171 0.90404 0.89701 0.92622 0.91916 0.88766 0.93601 0.74342 0.82013 0.81327 0.82904 0.86577 0.90413 0.71776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 8.32 71.99 0.60 -1.35 16 2 C -0.06 -0.93 0.59 -52.18 -0.03 -0.96 16 3 C -0.15 -2.01 7.95 71.98 0.57 -1.44 16 4 C -0.15 -1.86 8.06 71.98 0.58 -1.28 16 5 C 0.16 4.19 1.79 44.24 0.08 4.27 16 6 H 0.11 3.22 7.58 -2.39 -0.02 3.20 16 7 N -0.70 -20.18 3.78 -449.28 -1.70 -21.88 16 8 C 0.56 23.51 7.59 86.70 0.66 24.16 16 9 O -0.57 -30.08 14.83 16.91 0.25 -29.83 16 10 C -0.23 -9.55 5.89 -19.99 -0.12 -9.67 16 11 C -0.03 -0.85 9.54 22.52 0.21 -0.64 16 12 C -0.19 -4.70 10.03 22.25 0.22 -4.48 16 13 C -0.04 -1.24 10.03 22.30 0.22 -1.01 16 14 C -0.25 -10.80 9.16 22.36 0.20 -10.60 16 15 C 0.16 8.04 6.66 22.91 0.15 8.20 16 16 O -0.21 -12.54 6.67 0.83 0.01 -12.54 16 17 C -0.40 -25.05 9.95 67.93 0.68 -24.37 16 18 H 0.09 5.79 5.44 -2.91 -0.02 5.77 16 19 C 0.03 1.71 5.49 84.85 0.47 2.17 16 20 N -0.91 -56.25 13.96 21.62 0.30 -55.94 16 21 Si 0.95 51.82 28.62 68.60 1.96 53.78 16 22 H -0.27 -14.38 7.11 99.48 0.71 -13.67 16 23 H -0.26 -13.16 7.11 99.48 0.71 -12.46 16 24 H -0.27 -16.14 7.11 99.48 0.71 -15.43 16 25 C 0.47 13.32 6.33 71.24 0.45 13.77 16 26 O -0.54 -19.90 17.08 21.96 0.38 -19.52 16 27 O -0.50 -9.89 10.34 -51.43 -0.53 -10.42 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.86 7.45 -2.39 -0.02 0.84 16 31 H 0.08 1.11 5.33 -2.39 -0.01 1.10 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.73 6.51 -2.39 -0.02 0.72 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.04 0.69 7.22 -2.38 -0.02 0.67 16 37 H 0.42 8.87 4.68 -92.71 -0.43 8.44 16 38 H 0.16 2.91 6.40 -2.91 -0.02 2.89 16 39 H 0.17 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 41 H 0.12 5.48 5.64 -2.91 -0.02 5.46 16 42 H 0.29 16.28 8.31 -92.71 -0.77 15.51 16 43 H 0.42 5.12 9.10 -74.06 -0.67 4.45 16 Total: -1.00 -87.66 354.43 5.58 -82.08 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -0.03 Total: 17.50 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 4.95 Total: -3.23 kcal Atomic # 7 Polarization: -76.42 SS G_CDS: -1.40 Total: -77.82 kcal Atomic # 8 Polarization: -72.41 SS G_CDS: 0.10 Total: -72.31 kcal Atomic # 14 Polarization: 51.82 SS G_CDS: 1.96 Total: 53.78 kcal Total: -87.66 5.58 -82.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000736257653.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.533 kcal (2) G-P(sol) polarization free energy of solvation -87.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds