Wall clock time and date at job start Tue Mar 31 2020 13:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 C 1.52996 * 109.47046 * 120.00260 * 2 1 3 5 5 N 1.46903 * 109.47434 * 176.93735 * 4 2 1 6 6 C 1.46900 * 110.99875 * 288.21395 * 5 4 2 7 7 C 1.50701 * 109.46729 * 160.45292 * 6 5 4 8 8 H 1.07995 * 120.00282 * 4.67873 * 7 6 5 9 9 C 1.37884 * 119.99571 * 184.68180 * 7 6 5 10 10 N 1.31511 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99892 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46915 * 60.00041 * 11 9 7 13 13 H 1.48492 * 109.46990 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47138 * 300.00266 * 11 9 7 15 15 C 1.46900 * 111.00025 * 164.25802 * 5 4 2 16 16 N 1.46503 * 109.47073 * 293.95384 * 15 5 4 17 17 N 1.39881 * 125.44867 * 270.75513 * 16 15 5 18 18 C 1.30303 * 110.07202 * 179.97438 * 17 16 15 19 19 Cl 1.73605 * 126.11385 * 179.50806 * 18 17 16 20 20 C 1.46000 * 107.76570 * 359.46758 * 18 17 16 21 21 C 1.39922 * 134.03134 * 180.02562 * 20 18 17 22 22 C 1.36469 * 119.64004 * 179.72621 * 21 20 18 23 23 C 1.38966 * 120.62691 * 0.29469 * 22 21 20 24 24 C 1.36589 * 120.80931 * 0.02562 * 23 22 21 25 25 C 1.37036 * 125.45052 * 90.00453 * 16 15 5 26 26 H 1.09007 * 109.46824 * 300.00121 * 1 2 3 27 27 H 1.09006 * 109.46546 * 59.99624 * 1 2 3 28 28 H 1.08994 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47079 * 240.00065 * 2 1 3 30 30 H 1.08999 * 109.46701 * 60.00475 * 3 2 1 31 31 H 1.09006 * 109.47035 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47299 * 300.00106 * 3 2 1 33 33 H 1.09000 * 109.47474 * 56.93989 * 4 2 1 34 34 H 1.08996 * 109.47428 * 296.93898 * 4 2 1 35 35 H 1.08997 * 109.46942 * 280.44694 * 6 5 4 36 36 H 1.08997 * 109.47215 * 40.45187 * 6 5 4 37 37 H 0.97005 * 119.99746 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.46950 * 173.95725 * 15 5 4 39 39 H 1.08994 * 109.47534 * 53.95776 * 15 5 4 40 40 H 1.07999 * 120.18188 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.68741 * 180.27738 * 22 21 20 42 42 H 1.07999 * 119.59802 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.07582 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5071 -0.7858 1.2128 6 6 3.9671 -1.7393 0.1944 7 6 5.4031 -1.4460 -0.1561 8 1 5.9453 -0.6826 0.3821 9 6 6.0248 -2.1524 -1.1639 10 7 5.3644 -3.0816 -1.8196 11 14 7.8046 -1.7884 -1.5989 12 1 8.6633 -2.0272 -0.4110 13 1 8.2348 -2.6772 -2.7080 14 1 7.9305 -0.3711 -2.0238 15 6 4.0522 -1.1234 2.5346 16 7 3.7743 -0.0313 3.4708 17 7 4.6016 1.0738 3.6968 18 6 4.0656 1.8589 4.5880 19 17 4.7443 3.3402 5.1872 20 6 2.7919 1.2704 4.9916 21 6 1.7899 1.6450 5.8936 22 6 0.6858 0.8567 6.0415 23 6 0.5507 -0.3169 5.3096 24 6 1.5183 -0.7069 4.4279 25 6 2.6557 0.0783 4.2547 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6326 -1.7319 1.2770 34 1 1.7222 -0.1768 2.1383 35 1 3.8883 -2.7539 0.5848 36 1 3.3486 -1.6443 -0.6980 37 1 5.8017 -3.5783 -2.5289 38 1 5.1294 -1.2699 2.4567 39 1 3.5861 -2.0397 2.8966 40 1 1.8878 2.5552 6.4666 41 1 -0.0901 1.1474 6.7341 42 1 -0.3298 -0.9285 5.4400 43 1 1.4012 -1.6214 3.8655 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000769649137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:09 Heat of formation + Delta-G solvation = 85.302305 kcal Electronic energy + Delta-G solvation = -25371.563154 eV Core-core repulsion = 21865.055189 eV Total energy + Delta-G solvation = -3506.507965 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29787 -37.75237 -37.21661 -36.66745 -34.30309 -32.93375 -31.85089 -30.03534 -29.77115 -27.35819 -26.69333 -25.93711 -23.76301 -23.10803 -22.05896 -21.51959 -20.36572 -19.07245 -17.29175 -17.09112 -16.60503 -15.60426 -15.34220 -15.11049 -14.71998 -14.57568 -14.29549 -13.86810 -13.83135 -13.71701 -13.17502 -12.79629 -12.40960 -12.17980 -12.10421 -11.92513 -11.79783 -11.66127 -11.62252 -11.42636 -11.23687 -11.10868 -10.79958 -10.73338 -10.50686 -10.48286 -10.33621 -10.20154 -9.87116 -9.76179 -9.32075 -8.72355 -8.49737 -7.88539 -7.48184 -6.10083 -4.12132 0.90705 1.42971 1.48605 2.39592 2.84902 3.31607 3.35434 3.39815 3.73201 4.34408 4.39594 4.67237 4.72626 4.87006 4.94178 5.25461 5.27692 5.30010 5.32926 5.38029 5.49651 5.63631 5.75886 5.82513 5.83664 5.94213 6.00510 6.04116 6.16410 6.18821 6.23594 6.33810 6.39995 6.44927 6.50576 6.74905 6.80502 6.93035 6.98313 7.01826 7.20083 7.59425 7.74085 7.89416 8.02149 8.36481 8.95570 9.53162 11.00029 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.004506 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.403833 B = 6212.970443 C = 7426.903780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.090 4.090 3 C -0.130 4.130 4 C 0.052 3.948 5 N -0.542 5.542 6 C 0.199 3.801 7 C -0.512 4.512 8 H 0.064 0.936 9 C 0.059 3.941 10 N -0.898 5.898 11 Si 0.898 3.102 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.309 3.691 16 N -0.367 5.367 17 N -0.205 5.205 18 C 0.121 3.879 19 Cl 0.009 6.991 20 C -0.168 4.168 21 C -0.038 4.038 22 C -0.162 4.162 23 C -0.071 4.071 24 C -0.136 4.136 25 C 0.140 3.860 26 H 0.048 0.952 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.064 0.936 35 H -0.008 1.008 36 H 0.045 0.955 37 H 0.263 0.737 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.128 0.872 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 7.080 14.306 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 C -0.188 4.188 4 C -0.076 4.076 5 N -0.268 5.268 6 C 0.074 3.926 7 C -0.550 4.550 8 H 0.083 0.917 9 C -0.142 4.142 10 N -0.537 5.537 11 Si 0.725 3.275 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.201 1.201 15 C 0.100 3.900 16 N -0.157 5.157 17 N -0.022 5.022 18 C -0.081 4.081 19 Cl 0.036 6.964 20 C -0.177 4.177 21 C -0.058 4.058 22 C -0.182 4.182 23 C -0.091 4.091 24 C -0.158 4.158 25 C 0.024 3.976 26 H 0.067 0.933 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.010 0.990 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.137 0.863 39 H 0.078 0.922 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.146 0.854 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.268 7.192 13.156 17.627 hybrid contribution 0.115 -0.409 0.258 0.497 sum -9.153 6.783 13.414 17.599 Atomic orbital electron populations 1.21808 0.96063 1.01076 1.01136 1.21063 0.93953 0.97187 0.98677 1.21627 1.02944 0.94828 0.99383 1.22303 0.89025 0.97890 0.98413 1.62026 1.06765 1.53726 1.04329 1.19767 0.96715 0.87344 0.88739 1.21120 0.95975 1.19740 1.18179 0.91737 1.24951 0.98349 0.95001 0.95931 1.69934 1.36988 1.23437 1.23322 0.86560 0.84620 0.78311 0.77963 1.20210 1.21376 1.20107 1.22162 1.03112 0.81564 0.83184 1.48737 1.13643 1.18656 1.34631 1.76705 1.16835 0.95194 1.13416 1.23651 0.93316 0.92407 0.98722 1.98374 1.84779 1.27817 1.85405 1.19464 0.96377 0.97035 1.04809 1.20294 0.91634 0.98822 0.95070 1.20601 0.98721 0.96216 1.02652 1.20702 0.97837 0.96230 0.94366 1.19911 0.92575 1.00770 1.02512 1.18830 0.90008 0.95592 0.93218 0.93280 0.92915 0.93148 0.90396 0.94351 0.90903 0.94108 0.95744 0.91735 0.99010 0.93682 0.92774 0.86321 0.92219 0.85570 0.85680 0.85396 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 37.16 0.34 -1.62 16 2 C -0.09 -1.53 2.92 -90.62 -0.26 -1.80 16 3 C -0.13 -2.26 9.07 37.16 0.34 -1.92 16 4 C 0.05 0.91 4.03 -3.82 -0.02 0.89 16 5 N -0.54 -11.02 3.89 -239.99 -0.93 -11.95 16 6 C 0.20 4.80 4.59 -4.98 -0.02 4.78 16 7 C -0.51 -13.75 8.61 -34.44 -0.30 -14.05 16 8 H 0.06 1.77 7.65 -52.49 -0.40 1.36 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.90 -25.67 13.29 55.43 0.74 -24.94 16 11 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.31 5.75 5.94 -63.31 -0.38 5.38 16 16 N -0.37 -6.45 3.62 -61.70 -0.22 -6.68 16 17 N -0.20 -3.78 12.41 34.13 0.42 -3.36 16 18 C 0.12 1.93 8.09 -15.09 -0.12 1.80 16 19 Cl 0.01 0.11 29.33 -51.86 -1.52 -1.41 16 20 C -0.17 -2.45 6.37 -105.19 -0.67 -3.12 16 21 C -0.04 -0.43 10.06 -39.59 -0.40 -0.83 16 22 C -0.16 -1.61 9.97 -39.95 -0.40 -2.00 16 23 C -0.07 -0.73 9.96 -39.91 -0.40 -1.12 16 24 C -0.14 -1.73 8.47 -39.78 -0.34 -2.06 16 25 C 0.14 2.15 5.53 -84.18 -0.47 1.68 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.51 6.45 -51.93 -0.33 1.18 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.48 7.69 -51.93 -0.40 1.08 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.02 0.42 8.06 -51.93 -0.42 0.00 16 34 H 0.06 1.08 4.52 -51.93 -0.23 0.84 16 35 H -0.01 -0.20 8.00 -51.93 -0.42 -0.61 16 36 H 0.05 1.17 6.20 -51.93 -0.32 0.85 16 37 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 38 H 0.12 2.40 7.31 -51.93 -0.38 2.03 16 39 H 0.06 1.00 8.11 -51.93 -0.42 0.58 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 43 H 0.13 1.50 7.87 -52.49 -0.41 1.09 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -29.03 366.70 -10.45 -39.49 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -6.26 Total: -0.61 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -3.18 Total: -12.46 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.00 Total: -46.93 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 17 Polarization: 0.11 SS G_CDS: -1.52 Total: -1.41 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.03 -10.45 -39.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769649137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.791 kcal (2) G-P(sol) polarization free energy of solvation -29.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds