Wall clock time and date at job start Tue Mar 31 2020 13:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47368 * 2 1 4 4 C 1.52996 * 109.47046 * 120.00260 * 2 1 3 5 5 N 1.46903 * 109.47434 * 176.93735 * 4 2 1 6 6 C 1.46900 * 110.99875 * 288.21395 * 5 4 2 7 7 C 1.50701 * 109.46729 * 160.45292 * 6 5 4 8 8 H 1.07995 * 120.00282 * 4.67873 * 7 6 5 9 9 C 1.37884 * 119.99571 * 184.68180 * 7 6 5 10 10 N 1.31511 * 119.99851 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 119.99892 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46915 * 60.00041 * 11 9 7 13 13 H 1.48492 * 109.46990 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.47138 * 300.00266 * 11 9 7 15 15 C 1.46900 * 111.00025 * 164.25802 * 5 4 2 16 16 N 1.46503 * 109.47073 * 293.95384 * 15 5 4 17 17 N 1.39881 * 125.44867 * 270.75513 * 16 15 5 18 18 C 1.30303 * 110.07202 * 179.97438 * 17 16 15 19 19 Cl 1.73605 * 126.11385 * 179.50806 * 18 17 16 20 20 C 1.46000 * 107.76570 * 359.46758 * 18 17 16 21 21 C 1.39922 * 134.03134 * 180.02562 * 20 18 17 22 22 C 1.36469 * 119.64004 * 179.72621 * 21 20 18 23 23 C 1.38966 * 120.62691 * 0.29469 * 22 21 20 24 24 C 1.36589 * 120.80931 * 0.02562 * 23 22 21 25 25 C 1.37036 * 125.45052 * 90.00453 * 16 15 5 26 26 H 1.09007 * 109.46824 * 300.00121 * 1 2 3 27 27 H 1.09006 * 109.46546 * 59.99624 * 1 2 3 28 28 H 1.08994 * 109.47349 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47079 * 240.00065 * 2 1 3 30 30 H 1.08999 * 109.46701 * 60.00475 * 3 2 1 31 31 H 1.09006 * 109.47035 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47299 * 300.00106 * 3 2 1 33 33 H 1.09000 * 109.47474 * 56.93989 * 4 2 1 34 34 H 1.08996 * 109.47428 * 296.93898 * 4 2 1 35 35 H 1.08997 * 109.46942 * 280.44694 * 6 5 4 36 36 H 1.08997 * 109.47215 * 40.45187 * 6 5 4 37 37 H 0.97005 * 119.99746 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.46950 * 173.95725 * 15 5 4 39 39 H 1.08994 * 109.47534 * 53.95776 * 15 5 4 40 40 H 1.07999 * 120.18188 * 359.97438 * 21 20 18 41 41 H 1.07999 * 119.68741 * 180.27738 * 22 21 20 42 42 H 1.07999 * 119.59802 * 179.97438 * 23 22 21 43 43 H 1.08001 * 120.07582 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5071 -0.7858 1.2128 6 6 3.9671 -1.7393 0.1944 7 6 5.4031 -1.4460 -0.1561 8 1 5.9453 -0.6826 0.3821 9 6 6.0248 -2.1524 -1.1639 10 7 5.3644 -3.0816 -1.8196 11 14 7.8046 -1.7884 -1.5989 12 1 8.6633 -2.0272 -0.4110 13 1 8.2348 -2.6772 -2.7080 14 1 7.9305 -0.3711 -2.0238 15 6 4.0522 -1.1234 2.5346 16 7 3.7743 -0.0313 3.4708 17 7 4.6016 1.0738 3.6968 18 6 4.0656 1.8589 4.5880 19 17 4.7443 3.3402 5.1872 20 6 2.7919 1.2704 4.9916 21 6 1.7899 1.6450 5.8936 22 6 0.6858 0.8567 6.0415 23 6 0.5507 -0.3169 5.3096 24 6 1.5183 -0.7069 4.4279 25 6 2.6557 0.0783 4.2547 26 1 -0.3633 0.5139 0.8900 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 3.1301 1.4424 0.0005 32 1 1.6768 1.9563 -0.8899 33 1 1.6326 -1.7319 1.2770 34 1 1.7222 -0.1768 2.1383 35 1 3.8883 -2.7539 0.5848 36 1 3.3486 -1.6443 -0.6980 37 1 5.8017 -3.5783 -2.5289 38 1 5.1294 -1.2699 2.4567 39 1 3.5861 -2.0397 2.8966 40 1 1.8878 2.5552 6.4666 41 1 -0.0901 1.1474 6.7341 42 1 -0.3298 -0.9285 5.4400 43 1 1.4012 -1.6214 3.8655 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769649137.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:08 Heat of formation + Delta-G solvation = 70.116776 kcal Electronic energy + Delta-G solvation = -25372.221648 eV Core-core repulsion = 21865.055189 eV Total energy + Delta-G solvation = -3507.166459 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.41544 -39.21798 -38.24245 -37.78404 -35.77188 -34.77486 -33.23811 -31.10790 -30.83404 -29.23896 -27.97575 -27.28206 -25.50826 -24.11267 -23.29752 -22.93602 -21.57766 -20.52899 -18.68985 -18.41920 -18.05396 -17.14158 -16.67108 -16.33938 -16.14782 -16.03331 -15.53802 -15.16319 -15.06288 -14.77957 -14.61872 -14.28630 -13.93754 -13.56500 -13.41004 -13.24548 -13.13770 -12.92724 -12.86726 -12.72052 -12.69593 -12.53468 -12.47048 -12.10928 -12.00756 -11.84188 -11.76714 -11.61793 -11.40096 -11.30221 -10.89741 -10.61486 -9.74725 -9.21383 -8.87049 -8.22519 -6.31281 -0.07956 0.27286 0.52195 1.26635 1.38485 1.40180 1.48365 1.64338 2.37687 2.81107 3.06058 3.15724 3.35309 3.54543 3.84341 3.90993 4.06931 4.11356 4.23775 4.29076 4.35101 4.42688 4.46468 4.59387 4.61311 4.78930 4.80365 4.87266 4.95273 4.99323 5.00979 5.09227 5.13695 5.19133 5.27559 5.44460 5.48271 5.50586 5.58521 5.62280 5.80852 5.96785 6.04912 6.21474 6.39311 6.55237 6.82034 7.37824 8.87003 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.011814 B = 0.004506 C = 0.003769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.403833 B = 6212.970443 C = 7426.903780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.092 4.092 3 C -0.120 4.120 4 C 0.058 3.942 5 N -0.553 5.553 6 C 0.219 3.781 7 C -0.523 4.523 8 H 0.052 0.948 9 C 0.013 3.987 10 N -0.927 5.927 11 Si 0.958 3.042 12 H -0.271 1.271 13 H -0.280 1.280 14 H -0.275 1.275 15 C 0.319 3.681 16 N -0.381 5.381 17 N -0.258 5.258 18 C 0.124 3.876 19 Cl 0.028 6.972 20 C -0.185 4.185 21 C -0.042 4.042 22 C -0.149 4.149 23 C -0.054 4.054 24 C -0.155 4.155 25 C 0.120 3.880 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.055 0.945 33 H 0.028 0.972 34 H 0.078 0.922 35 H -0.026 1.026 36 H 0.023 0.977 37 H 0.265 0.735 38 H 0.090 0.910 39 H 0.075 0.925 40 H 0.149 0.851 41 H 0.165 0.835 42 H 0.165 0.835 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.982 8.038 16.314 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 C -0.178 4.178 4 C -0.070 4.070 5 N -0.279 5.279 6 C 0.093 3.907 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.186 4.186 10 N -0.567 5.567 11 Si 0.783 3.217 12 H -0.196 1.196 13 H -0.205 1.205 14 H -0.201 1.201 15 C 0.109 3.891 16 N -0.172 5.172 17 N -0.075 5.075 18 C -0.078 4.078 19 Cl 0.056 6.944 20 C -0.193 4.193 21 C -0.062 4.062 22 C -0.168 4.168 23 C -0.074 4.074 24 C -0.177 4.177 25 C 0.006 3.994 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.096 0.904 35 H -0.008 1.008 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.167 0.833 41 H 0.182 0.818 42 H 0.182 0.818 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.659 8.170 15.199 20.825 hybrid contribution 0.737 -0.622 -0.205 0.986 sum -10.922 7.548 14.993 20.027 Atomic orbital electron populations 1.21718 0.92849 1.02077 1.02430 1.21077 0.96604 0.96357 0.97024 1.21505 1.00366 0.95443 1.00443 1.22331 0.87062 0.98351 0.99237 1.61878 1.08797 1.52562 1.04639 1.19322 0.95167 0.87200 0.89023 1.21352 0.97373 1.19267 1.18112 0.92984 1.25696 1.02206 0.94815 0.95850 1.70031 1.38548 1.24293 1.23845 0.85610 0.80059 0.78044 0.77943 1.19586 1.20481 1.20091 1.21828 1.01487 0.82942 0.82846 1.48394 1.14889 1.18554 1.35383 1.76593 1.18636 0.96552 1.15736 1.24003 0.93743 0.92444 0.97650 1.98372 1.84674 1.26420 1.84965 1.19723 0.96688 0.96922 1.05982 1.20666 0.91151 0.99992 0.94358 1.21099 0.98603 0.95106 1.02041 1.21191 0.97758 0.96276 0.92175 1.20148 0.92556 1.01016 1.03981 1.19244 0.90126 0.96724 0.93293 0.91789 0.91764 0.92330 0.93503 0.93603 0.94720 0.92570 0.95352 0.90375 1.00796 0.95914 0.92601 0.89141 0.90719 0.83284 0.81777 0.81794 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.40 9.19 71.98 0.66 -2.74 16 2 C -0.09 -3.14 2.92 -10.80 -0.03 -3.17 16 3 C -0.12 -4.20 9.07 71.98 0.65 -3.54 16 4 C 0.06 2.05 4.03 86.30 0.35 2.39 16 5 N -0.55 -23.61 3.89 -913.18 -3.55 -27.17 16 6 C 0.22 11.18 4.59 85.56 0.39 11.57 16 7 C -0.52 -29.47 8.61 25.60 0.22 -29.25 16 8 H 0.05 3.01 7.65 -2.91 -0.02 2.98 16 9 C 0.01 0.75 5.46 84.66 0.46 1.21 16 10 N -0.93 -54.52 13.29 21.45 0.28 -54.23 16 11 Si 0.96 44.99 29.54 68.60 2.03 47.02 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 14 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 15 C 0.32 12.56 5.94 170.81 1.01 13.57 16 16 N -0.38 -13.89 3.62 -349.13 -1.27 -15.15 16 17 N -0.26 -9.94 12.41 -45.94 -0.57 -10.51 16 18 C 0.12 3.95 8.09 86.93 0.70 4.65 16 19 Cl 0.03 0.71 29.33 -2.72 -0.08 0.63 16 20 C -0.18 -5.16 6.37 -20.23 -0.13 -5.28 16 21 C -0.04 -0.81 10.06 22.26 0.22 -0.59 16 22 C -0.15 -2.21 9.97 22.03 0.22 -1.99 16 23 C -0.05 -0.87 9.96 22.06 0.22 -0.65 16 24 C -0.16 -3.62 8.47 22.14 0.19 -3.43 16 25 C 0.12 3.63 5.53 39.21 0.22 3.85 16 26 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.90 6.45 -2.39 -0.02 1.88 16 30 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.03 1.45 7.69 -2.38 -0.02 1.43 16 32 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.03 0.98 8.06 -2.39 -0.02 0.96 16 34 H 0.08 2.57 4.52 -2.39 -0.01 2.56 16 35 H -0.03 -1.37 8.00 -2.39 -0.02 -1.39 16 36 H 0.02 1.26 6.20 -2.39 -0.01 1.25 16 37 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 38 H 0.09 3.99 7.31 -2.39 -0.02 3.97 16 39 H 0.08 2.64 8.11 -2.39 -0.02 2.62 16 40 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 41 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 42 H 0.16 1.50 8.06 -2.91 -0.02 1.47 16 43 H 0.13 2.86 7.87 -2.91 -0.02 2.84 16 Total: -1.00 -66.39 366.70 3.21 -63.18 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.00 Total: 9.62 kcal Atomic # 6 Polarization: -18.76 SS G_CDS: 5.36 Total: -13.40 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -5.10 Total: -107.06 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -0.08 Total: 0.63 kcal Total: -66.39 3.21 -63.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769649137.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.302 kcal (2) G-P(sol) polarization free energy of solvation -66.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds