Wall clock time and date at job start Tue Mar 31 2020 13:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47128 * 2 1 4 4 C 1.52999 * 109.46891 * 119.99452 * 2 1 3 5 5 N 1.46504 * 109.46919 * 65.00369 * 4 2 1 6 6 C 1.46502 * 119.99727 * 264.29705 * 5 4 2 7 7 C 1.50693 * 109.47121 * 270.00240 * 6 5 4 8 8 H 1.07993 * 120.00605 * 359.97438 * 7 6 5 9 9 C 1.37882 * 119.99874 * 180.02562 * 7 6 5 10 10 N 1.31519 * 119.99902 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00158 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47255 * 59.99949 * 11 9 7 13 13 H 1.48500 * 109.47438 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47144 * 299.99930 * 11 9 7 15 15 C 1.34776 * 120.00125 * 84.30301 * 5 4 2 16 16 O 1.21622 * 119.99819 * 184.72773 * 15 5 4 17 17 C 1.47295 * 119.99698 * 4.72248 * 15 5 4 18 18 C 1.39925 * 120.13005 * 54.68404 * 17 15 5 19 19 C 1.37904 * 119.97444 * 179.97438 * 18 17 15 20 20 C 1.39725 * 120.11370 * 359.97438 * 19 18 17 21 21 C 1.38597 * 120.14407 * 359.95022 * 20 19 18 22 22 C 1.38458 * 120.18664 * 0.11376 * 21 20 19 23 23 O 1.35720 * 120.07914 * 179.97438 * 22 21 20 24 24 O 1.36371 * 108.56451 * 179.97438 * 20 19 18 25 25 C 1.43957 * 105.55372 * 342.63906 * 24 20 19 26 26 O 1.36641 * 131.34612 * 179.97438 * 19 18 17 27 27 H 1.08996 * 109.47418 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47666 * 300.00329 * 1 2 3 29 29 H 1.09009 * 109.47491 * 60.00198 * 1 2 3 30 30 H 1.08992 * 109.47312 * 239.99935 * 2 1 3 31 31 H 1.09000 * 109.47286 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46580 * 299.99501 * 3 2 1 33 33 H 1.08996 * 109.47458 * 59.99502 * 3 2 1 34 34 H 1.09003 * 109.47323 * 305.00158 * 4 2 1 35 35 H 1.09004 * 109.47075 * 184.99766 * 4 2 1 36 36 H 1.09000 * 109.47219 * 30.00630 * 6 5 4 37 37 H 1.09004 * 109.46552 * 150.00165 * 6 5 4 38 38 H 0.97001 * 119.99658 * 180.02562 * 10 9 7 39 39 H 1.08006 * 120.01528 * 359.95036 * 18 17 15 40 40 H 1.08001 * 119.90782 * 179.97438 * 21 20 19 41 41 H 0.96700 * 114.00143 * 269.93585 * 23 22 21 42 42 H 1.08998 * 110.55801 * 145.87265 * 25 24 20 43 43 H 1.08997 * 110.55951 * 268.70885 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 1.6523 -2.1328 1.1907 6 6 0.4361 -2.5872 1.8693 7 6 0.7717 -2.9985 3.2797 8 1 1.7891 -2.9289 3.6349 9 6 -0.2201 -3.4648 4.1163 10 7 -1.4590 -3.5511 3.6832 11 14 0.1959 -3.9754 5.8643 12 1 0.7667 -2.8161 6.5960 13 1 -1.0369 -4.4359 6.5522 14 1 1.1885 -5.0795 5.8345 15 6 2.4147 -3.0133 0.5125 16 8 2.0492 -4.1669 0.3910 17 6 3.6905 -2.5784 -0.0815 18 6 4.6615 -1.9608 0.7144 19 6 5.8550 -1.5553 0.1550 20 6 6.0969 -1.7606 -1.2058 21 6 5.1391 -2.3733 -1.9983 22 6 3.9371 -2.7828 -1.4465 23 8 3.0005 -3.3821 -2.2247 24 8 7.3354 -1.2743 -1.5047 25 6 7.6823 -0.4035 -0.4122 26 8 6.9458 -0.9408 0.7023 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4426 -0.0005 32 1 1.6766 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6052 -0.2616 2.1370 35 1 3.1262 -0.6443 1.2952 36 1 -0.2924 -1.7768 1.8908 37 1 0.0171 -3.4384 1.3325 38 1 -2.1568 -3.8788 4.2719 39 1 4.4762 -1.8013 1.7664 40 1 5.3300 -2.5297 -3.0497 41 1 2.3756 -2.7669 -2.6324 42 1 8.7539 -0.4425 -0.2169 43 1 7.3676 0.6186 -0.6226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000769725808.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:11 Heat of formation + Delta-G solvation = -134.026918 kcal Electronic energy + Delta-G solvation = -28326.555661 eV Core-core repulsion = 24337.534952 eV Total energy + Delta-G solvation = -3989.020709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.27036 -41.34111 -39.48612 -37.78816 -37.39243 -36.97252 -35.39684 -34.15435 -32.14874 -30.50065 -29.43916 -27.97191 -27.17171 -26.71643 -25.50527 -24.23740 -23.77081 -21.56416 -20.70476 -20.12554 -18.79113 -18.61225 -18.51122 -18.31805 -17.36523 -17.15083 -16.74165 -16.39900 -15.99056 -15.98357 -15.68763 -15.45092 -15.04000 -14.91301 -14.50408 -14.42864 -14.14382 -14.03664 -13.68472 -13.58962 -13.44359 -13.08577 -12.97230 -12.94407 -12.66885 -12.54348 -12.17214 -12.13394 -11.96686 -11.87759 -11.67513 -11.59455 -11.51635 -10.77260 -10.61846 -10.02951 -9.42128 -9.11295 -8.21211 -6.35773 -0.35480 -0.05935 1.36340 1.40542 1.43917 1.48500 1.80754 2.22219 2.23687 2.38234 2.51389 3.08363 3.13933 3.24809 3.53797 3.78117 3.90095 3.92555 4.02748 4.06960 4.18945 4.22758 4.37288 4.58806 4.65775 4.71835 4.77601 4.83697 4.84863 4.90520 4.91959 5.04705 5.05270 5.09926 5.12801 5.23971 5.28636 5.43344 5.48425 5.59082 5.85622 5.93394 6.08030 6.65042 6.69335 6.74539 7.25510 7.41309 8.85306 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.004266 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.804640 B = 6561.215860 C = 6936.901537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.135 4.135 4 C 0.102 3.898 5 N -0.586 5.586 6 C 0.265 3.735 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.012 3.988 10 N -0.925 5.925 11 Si 0.963 3.037 12 H -0.260 1.260 13 H -0.278 1.278 14 H -0.280 1.280 15 C 0.553 3.447 16 O -0.579 6.579 17 C -0.147 4.147 18 C -0.060 4.060 19 C 0.020 3.980 20 C 0.072 3.928 21 C -0.123 4.123 22 C 0.164 3.836 23 O -0.490 6.490 24 O -0.310 6.310 25 C 0.203 3.797 26 O -0.317 6.317 27 H 0.028 0.972 28 H 0.050 0.950 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.035 0.965 37 H -0.004 1.004 38 H 0.267 0.733 39 H 0.142 0.858 40 H 0.173 0.827 41 H 0.411 0.589 42 H 0.166 0.834 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.153 14.579 -12.004 24.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.123 4.123 3 C -0.193 4.193 4 C -0.021 4.021 5 N -0.315 5.315 6 C 0.144 3.856 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.787 3.213 12 H -0.184 1.184 13 H -0.203 1.203 14 H -0.206 1.206 15 C 0.341 3.659 16 O -0.460 6.460 17 C -0.151 4.151 18 C -0.079 4.079 19 C -0.024 4.024 20 C 0.026 3.974 21 C -0.142 4.142 22 C 0.118 3.882 23 O -0.303 6.303 24 O -0.226 6.226 25 C 0.093 3.907 26 O -0.234 6.234 27 H 0.047 0.953 28 H 0.069 0.931 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.053 0.947 37 H 0.014 0.986 38 H 0.076 0.924 39 H 0.160 0.840 40 H 0.190 0.810 41 H 0.271 0.729 42 H 0.183 0.817 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 16.256 13.453 -11.793 24.173 hybrid contribution -0.561 -0.323 1.046 1.230 sum 15.696 13.131 -10.747 23.114 Atomic orbital electron populations 1.21836 0.95602 1.00692 1.02017 1.21489 0.95977 0.97656 0.97171 1.21712 1.01303 0.93433 1.02808 1.22059 1.01083 0.79537 0.99375 1.48099 1.25202 1.08759 1.49442 1.18821 0.82106 0.94291 0.90384 1.21716 0.94654 1.44208 0.98041 0.92963 1.25785 0.94697 0.95170 1.03071 1.70039 1.01345 1.47060 1.38025 0.85541 0.77633 0.78922 0.79169 1.18430 1.20278 1.20562 1.18271 0.84177 0.84945 0.78470 1.90770 1.73415 1.20504 1.61296 1.19924 0.95435 1.04456 0.95270 1.19819 0.89151 0.98224 1.00744 1.19417 0.89676 1.02220 0.91105 1.19687 0.86164 0.99317 0.92197 1.20187 0.90376 1.01925 1.01747 1.17830 0.89989 0.92969 0.87460 1.84832 1.44060 1.36452 1.64967 1.87333 1.28059 1.61314 1.45870 1.26284 1.00314 0.93496 0.70646 1.87428 1.32786 1.70492 1.32698 0.95252 0.93065 0.91017 0.91496 0.91715 0.91015 0.92248 0.90604 0.89139 0.94728 0.98559 0.92401 0.84047 0.80987 0.72933 0.81732 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.12 8.33 71.98 0.60 -3.52 16 2 C -0.10 -2.62 3.08 -10.79 -0.03 -2.66 16 3 C -0.13 -2.43 9.19 71.98 0.66 -1.77 16 4 C 0.10 3.26 4.59 86.38 0.40 3.65 16 5 N -0.59 -25.19 2.19 -830.17 -1.82 -27.00 16 6 C 0.26 14.26 4.28 85.63 0.37 14.63 16 7 C -0.55 -31.75 9.39 25.60 0.24 -31.51 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.01 0.70 5.46 84.66 0.46 1.16 16 10 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 11 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 12 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 14 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 15 C 0.55 24.51 6.74 86.63 0.58 25.09 16 16 O -0.58 -32.05 16.32 -1.20 -0.02 -32.07 16 17 C -0.15 -4.93 4.78 -20.01 -0.10 -5.02 16 18 C -0.06 -1.76 7.61 22.60 0.17 -1.59 16 19 C 0.02 0.50 7.13 22.55 0.16 0.66 16 20 C 0.07 1.61 7.15 22.72 0.16 1.77 16 21 C -0.12 -2.73 9.98 22.41 0.22 -2.51 16 22 C 0.16 4.65 6.70 22.80 0.15 4.80 16 23 O -0.49 -14.03 12.70 -87.52 -1.11 -15.14 16 24 O -0.31 -5.73 11.39 -74.54 -0.85 -6.58 16 25 C 0.20 2.49 8.88 113.37 1.01 3.50 16 26 O -0.32 -6.74 11.41 -77.72 -0.89 -7.63 16 27 H 0.03 1.04 6.34 -2.39 -0.02 1.02 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 29 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 30 H 0.07 1.64 7.94 -2.39 -0.02 1.62 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.08 2.56 8.03 -2.39 -0.02 2.54 16 35 H 0.09 2.53 4.45 -2.38 -0.01 2.52 16 36 H 0.03 1.87 6.64 -2.39 -0.02 1.85 16 37 H 0.00 -0.23 7.36 -2.38 -0.02 -0.25 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.14 4.21 7.27 -2.91 -0.02 4.19 16 40 H 0.17 2.84 8.06 -2.91 -0.02 2.82 16 41 H 0.41 7.67 9.06 -74.06 -0.67 7.00 16 42 H 0.17 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -79.83 359.71 3.07 -76.76 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: 0.38 Total: 13.39 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: 5.06 Total: 6.71 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -1.53 Total: -82.73 kcal Atomic # 8 Polarization: -58.55 SS G_CDS: -2.87 Total: -61.42 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -79.83 3.07 -76.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000769725808.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.263 kcal (2) G-P(sol) polarization free energy of solvation -79.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds