Wall clock time and date at job start Tue Mar 31 2020 13:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46949 * 2 1 4 4 C 1.52996 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47049 * 54.99947 * 4 3 2 6 6 N 1.46497 * 109.47015 * 294.99819 * 4 3 2 7 7 C 1.34774 * 120.00221 * 85.00198 * 6 4 3 8 8 O 1.21600 * 119.99694 * 359.97438 * 7 6 4 9 9 C 1.47535 * 120.00217 * 180.02562 * 7 6 4 10 10 C 1.39666 * 120.20000 * 0.02562 * 9 7 6 11 11 C 1.37826 * 119.92254 * 179.97438 * 10 9 7 12 12 C 1.38571 * 120.32200 * 359.97438 * 11 10 9 13 13 C 1.38025 * 120.40289 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.07200 * 0.02562 * 13 12 11 15 15 O 1.35518 * 120.16239 * 180.02562 * 14 13 12 16 16 C 1.34818 * 117.00205 * 354.39162 * 15 14 13 17 17 H 1.08011 * 119.99422 * 5.05603 * 16 15 14 18 18 C 1.38693 * 120.00642 * 185.05484 * 16 15 14 19 19 N 1.31518 * 120.00332 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99716 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46910 * 89.99807 * 20 18 16 22 22 H 1.48498 * 109.46957 * 209.99907 * 20 18 16 23 23 H 1.48498 * 109.47151 * 330.00281 * 20 18 16 24 24 C 1.50704 * 109.47347 * 174.99513 * 4 3 2 25 25 O 1.20825 * 119.99636 * 119.99789 * 24 4 3 26 26 O 1.34222 * 120.00159 * 300.00251 * 24 4 3 27 27 C 1.45198 * 116.99934 * 179.97438 * 26 24 4 28 28 H 1.09004 * 109.46999 * 300.00076 * 1 2 3 29 29 H 1.08996 * 109.47557 * 60.00018 * 1 2 3 30 30 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47279 * 240.00007 * 2 1 3 32 32 H 1.09000 * 109.47608 * 119.99476 * 2 1 3 33 33 H 1.08996 * 109.47125 * 59.99912 * 3 2 1 34 34 H 1.09009 * 109.46948 * 299.99707 * 3 2 1 35 35 H 0.97004 * 120.00314 * 264.99831 * 6 4 3 36 36 H 1.07997 * 120.03255 * 359.97438 * 10 9 7 37 37 H 1.07991 * 119.83480 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.79485 * 180.27994 * 12 11 10 39 39 H 1.08003 * 119.96584 * 180.02562 * 13 12 11 40 40 H 0.96997 * 120.00041 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47121 * 59.99971 * 27 26 24 42 42 H 1.09006 * 109.47418 * 179.97438 * 27 26 24 43 43 H 1.08999 * 109.47487 * 300.00241 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 7 4.0588 0.8588 1.2509 7 6 4.1876 -0.4779 1.3658 8 8 3.8977 -1.1992 0.4308 9 6 4.6794 -1.0659 2.6264 10 6 5.0121 -0.2413 3.7035 11 6 5.4705 -0.7968 4.8786 12 6 5.6028 -2.1710 4.9980 13 6 5.2779 -2.9983 3.9420 14 6 4.8156 -2.4565 2.7504 15 8 4.4956 -3.2671 1.7126 16 6 4.7576 -4.5814 1.8592 17 1 5.1268 -4.9565 2.8024 18 6 4.5532 -5.4519 0.7989 19 7 4.8084 -6.7341 0.9421 20 14 3.9154 -4.8030 -0.8325 21 1 5.0618 -4.4172 -1.6940 22 1 3.1213 -5.8598 -1.5092 23 1 3.0561 -3.6161 -0.5913 24 6 4.0722 2.8581 -0.1246 25 8 4.7671 3.3306 0.7435 26 8 3.7474 3.5938 -1.1992 27 6 4.2661 4.9489 -1.2515 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9564 -0.8901 35 1 4.2898 1.4342 1.9969 36 1 4.9103 0.8302 3.6155 37 1 5.7277 -0.1579 5.7104 38 1 5.9585 -2.5974 5.9243 39 1 5.3834 -4.0685 4.0429 40 1 4.6657 -7.3428 0.2005 41 1 5.3557 4.9219 -1.2334 42 1 3.9302 5.4315 -2.1695 43 1 3.9023 5.5107 -0.3912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000773968607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:22 Heat of formation + Delta-G solvation = -121.928192 kcal Electronic energy + Delta-G solvation = -27747.826496 eV Core-core repulsion = 23759.330426 eV Total energy + Delta-G solvation = -3988.496069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97777 -39.80614 -38.53492 -36.78753 -36.56344 -35.56523 -33.34559 -32.46566 -31.02079 -29.44197 -29.20320 -27.68761 -25.38188 -24.89339 -23.25493 -21.55870 -21.24029 -20.70572 -20.12480 -18.39180 -17.92506 -17.52234 -16.89336 -16.72915 -16.19686 -15.70322 -15.24284 -14.74596 -14.38866 -14.29416 -14.05177 -13.96569 -13.73259 -13.65590 -13.32300 -13.11827 -12.84913 -12.50767 -12.38090 -12.36823 -12.18189 -11.73253 -11.54851 -11.42509 -11.27169 -11.10905 -11.05739 -10.84157 -10.73698 -10.46600 -10.38279 -10.05794 -9.64723 -9.13074 -8.91288 -8.88107 -8.39970 -7.49432 -6.48265 -4.13479 1.54401 1.91026 2.18616 2.27022 3.30333 3.36625 3.44834 3.51756 3.63966 4.33463 4.38998 4.48398 4.71807 4.81364 4.82971 4.89673 4.96133 5.08184 5.17051 5.23140 5.26352 5.39612 5.43135 5.61914 5.64475 5.69418 5.83928 5.91560 5.94323 6.03215 6.04908 6.26051 6.36753 6.40531 6.51897 6.58985 6.68086 6.82360 6.99700 7.14043 7.43427 7.46960 7.65603 7.84727 7.93617 8.74901 8.87184 9.49489 10.56848 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.004638 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.269825 B = 6035.430130 C = 7413.001577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.159 3.841 5 H 0.127 0.873 6 N -0.728 5.728 7 C 0.567 3.433 8 O -0.509 6.509 9 C -0.227 4.227 10 C -0.039 4.039 11 C -0.220 4.220 12 C -0.049 4.049 13 C -0.227 4.227 14 C 0.203 3.797 15 O -0.165 6.165 16 C -0.396 4.396 17 H 0.108 0.892 18 C 0.072 3.928 19 N -0.870 5.870 20 Si 0.900 3.100 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.236 1.236 24 C 0.462 3.538 25 O -0.503 6.503 26 O -0.353 6.353 27 C 0.035 3.965 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.404 0.596 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.282 0.718 41 H 0.064 0.936 42 H 0.102 0.898 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 19.508 -0.809 19.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.160 4.160 4 C 0.052 3.948 5 H 0.144 0.856 6 N -0.386 5.386 7 C 0.359 3.641 8 O -0.385 6.385 9 C -0.232 4.232 10 C -0.058 4.058 11 C -0.239 4.239 12 C -0.068 4.068 13 C -0.246 4.246 14 C 0.145 3.855 15 O -0.065 6.065 16 C -0.471 4.471 17 H 0.125 0.875 18 C -0.134 4.134 19 N -0.505 5.505 20 Si 0.725 3.275 21 H -0.200 1.200 22 H -0.213 1.213 23 H -0.159 1.159 24 C 0.304 3.696 25 O -0.390 6.390 26 O -0.269 6.269 27 C -0.059 4.059 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.241 0.759 36 H 0.133 0.867 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.121 0.879 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.046 18.933 -1.611 19.427 hybrid contribution 0.215 0.553 -0.086 0.600 sum -3.831 19.486 -1.697 19.932 Atomic orbital electron populations 1.21769 0.96245 1.01728 1.00950 1.21613 0.94999 0.94704 1.04547 1.22015 0.91472 0.99551 1.02955 1.20365 0.95803 0.87097 0.91529 0.85579 1.45752 1.70281 1.07732 1.14854 1.18124 0.77271 0.80565 0.88186 1.90875 1.48325 1.59594 1.39660 1.18730 1.17862 0.91082 0.95491 1.20813 0.95047 0.97742 0.92149 1.20547 1.10138 0.94960 0.98289 1.20979 0.95102 0.93370 0.97330 1.21284 1.08388 1.01364 0.93596 1.18983 0.90136 0.88752 0.87585 1.83767 1.68380 1.19006 1.35304 1.20923 1.45482 0.78784 1.01930 0.87475 1.24495 0.95367 0.94137 0.99377 1.69637 1.44909 1.02307 1.33665 0.86204 0.80416 0.79729 0.81195 1.20020 1.21337 1.15864 1.23904 0.77384 0.88913 0.79389 1.90659 1.35365 1.72388 1.40581 1.86506 1.69679 1.27130 1.43565 1.23304 0.99909 0.79245 1.03425 0.93231 0.93172 0.92559 0.90900 0.90651 0.91402 0.90097 0.75898 0.86725 0.86962 0.86807 0.84388 0.90827 0.91767 0.87914 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.16 0.37 -1.47 16 2 C -0.12 -1.77 4.53 -26.73 -0.12 -1.89 16 3 C -0.12 -1.44 4.85 -26.73 -0.13 -1.57 16 4 C 0.16 2.13 2.77 -69.08 -0.19 1.93 16 5 H 0.13 1.80 7.58 -51.93 -0.39 1.41 16 6 N -0.73 -11.02 4.85 -55.98 -0.27 -11.30 16 7 C 0.57 10.96 6.33 -12.47 -0.08 10.89 16 8 O -0.51 -11.53 12.30 -16.58 -0.20 -11.73 16 9 C -0.23 -4.53 5.89 -104.81 -0.62 -5.14 16 10 C -0.04 -0.63 9.54 -39.20 -0.37 -1.00 16 11 C -0.22 -3.45 10.02 -39.61 -0.40 -3.85 16 12 C -0.05 -0.84 10.03 -39.54 -0.40 -1.23 16 13 C -0.23 -4.73 9.16 -39.44 -0.36 -5.09 16 14 C 0.20 4.69 6.66 -38.60 -0.26 4.44 16 15 O -0.16 -4.39 6.67 -21.06 -0.14 -4.53 16 16 C -0.40 -11.13 9.95 30.90 0.31 -10.82 16 17 H 0.11 3.01 5.44 -52.48 -0.29 2.73 16 18 C 0.07 2.03 5.49 -17.52 -0.10 1.94 16 19 N -0.87 -25.02 13.96 55.48 0.77 -24.25 16 20 Si 0.90 22.64 28.62 -169.99 -4.86 17.78 16 21 H -0.27 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.24 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.46 5.78 7.32 36.01 0.26 6.04 16 25 O -0.50 -7.19 15.59 -18.75 -0.29 -7.48 16 26 O -0.35 -3.75 10.37 -39.24 -0.41 -4.16 16 27 C 0.03 0.26 10.56 101.05 1.07 1.33 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 1.18 7.84 -51.93 -0.41 0.77 16 32 H 0.07 1.33 5.65 -51.93 -0.29 1.04 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.82 7.99 -51.92 -0.42 0.40 16 35 H 0.40 5.51 5.82 -40.82 -0.24 5.28 16 36 H 0.11 1.51 6.40 -52.49 -0.34 1.17 16 37 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.14 2.98 5.64 -52.48 -0.30 2.69 16 40 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 42 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -32.07 360.46 -6.59 -38.66 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -5.60 Total: 7.10 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -1.01 Total: -5.52 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.50 Total: -35.54 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -1.04 Total: -27.90 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.86 Total: 17.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.07 -6.59 -38.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773968607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.271 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds