Wall clock time and date at job start Tue Mar 31 2020 13:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46949 * 2 1 4 4 C 1.52996 * 109.47244 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47049 * 54.99947 * 4 3 2 6 6 N 1.46497 * 109.47015 * 294.99819 * 4 3 2 7 7 C 1.34774 * 120.00221 * 85.00198 * 6 4 3 8 8 O 1.21600 * 119.99694 * 359.97438 * 7 6 4 9 9 C 1.47535 * 120.00217 * 180.02562 * 7 6 4 10 10 C 1.39666 * 120.20000 * 0.02562 * 9 7 6 11 11 C 1.37826 * 119.92254 * 179.97438 * 10 9 7 12 12 C 1.38571 * 120.32200 * 359.97438 * 11 10 9 13 13 C 1.38025 * 120.40289 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.07200 * 0.02562 * 13 12 11 15 15 O 1.35518 * 120.16239 * 180.02562 * 14 13 12 16 16 C 1.34818 * 117.00205 * 354.39162 * 15 14 13 17 17 H 1.08011 * 119.99422 * 5.05603 * 16 15 14 18 18 C 1.38693 * 120.00642 * 185.05484 * 16 15 14 19 19 N 1.31518 * 120.00332 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99716 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46910 * 89.99807 * 20 18 16 22 22 H 1.48498 * 109.46957 * 209.99907 * 20 18 16 23 23 H 1.48498 * 109.47151 * 330.00281 * 20 18 16 24 24 C 1.50704 * 109.47347 * 174.99513 * 4 3 2 25 25 O 1.20825 * 119.99636 * 119.99789 * 24 4 3 26 26 O 1.34222 * 120.00159 * 300.00251 * 24 4 3 27 27 C 1.45198 * 116.99934 * 179.97438 * 26 24 4 28 28 H 1.09004 * 109.46999 * 300.00076 * 1 2 3 29 29 H 1.08996 * 109.47557 * 60.00018 * 1 2 3 30 30 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47279 * 240.00007 * 2 1 3 32 32 H 1.09000 * 109.47608 * 119.99476 * 2 1 3 33 33 H 1.08996 * 109.47125 * 59.99912 * 3 2 1 34 34 H 1.09009 * 109.46948 * 299.99707 * 3 2 1 35 35 H 0.97004 * 120.00314 * 264.99831 * 6 4 3 36 36 H 1.07997 * 120.03255 * 359.97438 * 10 9 7 37 37 H 1.07991 * 119.83480 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.79485 * 180.27994 * 12 11 10 39 39 H 1.08003 * 119.96584 * 180.02562 * 13 12 11 40 40 H 0.96997 * 120.00041 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47121 * 59.99971 * 27 26 24 42 42 H 1.09006 * 109.47418 * 179.97438 * 27 26 24 43 43 H 1.08999 * 109.47487 * 300.00241 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9329 0.8533 -0.8427 6 7 4.0588 0.8588 1.2509 7 6 4.1876 -0.4779 1.3658 8 8 3.8977 -1.1992 0.4308 9 6 4.6794 -1.0659 2.6264 10 6 5.0121 -0.2413 3.7035 11 6 5.4705 -0.7968 4.8786 12 6 5.6028 -2.1710 4.9980 13 6 5.2779 -2.9983 3.9420 14 6 4.8156 -2.4565 2.7504 15 8 4.4956 -3.2671 1.7126 16 6 4.7576 -4.5814 1.8592 17 1 5.1268 -4.9565 2.8024 18 6 4.5532 -5.4519 0.7989 19 7 4.8084 -6.7341 0.9421 20 14 3.9154 -4.8030 -0.8325 21 1 5.0618 -4.4172 -1.6940 22 1 3.1213 -5.8598 -1.5092 23 1 3.0561 -3.6161 -0.5913 24 6 4.0722 2.8581 -0.1246 25 8 4.7671 3.3306 0.7435 26 8 3.7474 3.5938 -1.1992 27 6 4.2661 4.9489 -1.2515 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9564 -0.8901 35 1 4.2898 1.4342 1.9969 36 1 4.9103 0.8302 3.6155 37 1 5.7277 -0.1579 5.7104 38 1 5.9585 -2.5974 5.9243 39 1 5.3834 -4.0685 4.0429 40 1 4.6657 -7.3428 0.2005 41 1 5.3557 4.9219 -1.2334 42 1 3.9302 5.4315 -2.1695 43 1 3.9023 5.5107 -0.3912 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000773968607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:21 Heat of formation + Delta-G solvation = -141.876524 kcal Electronic energy + Delta-G solvation = -27748.691520 eV Core-core repulsion = 23759.330426 eV Total energy + Delta-G solvation = -3989.361094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.05446 -41.26877 -40.04720 -38.19793 -37.74913 -36.79057 -34.63891 -34.48639 -32.40871 -30.79990 -30.60457 -28.43612 -27.28970 -26.00178 -24.65594 -23.08090 -22.31636 -21.94380 -21.48453 -19.86334 -19.71751 -18.63602 -18.28249 -17.75679 -17.44307 -16.92551 -16.63146 -16.35259 -15.83366 -15.77663 -15.64152 -15.46471 -15.16163 -14.70292 -14.54599 -14.36005 -14.16583 -14.11733 -14.02072 -13.55693 -13.11641 -13.11456 -12.85997 -12.68809 -12.58308 -12.57848 -12.39091 -12.15594 -11.98289 -11.86325 -11.58531 -11.50622 -11.44572 -10.95596 -10.73520 -10.23526 -9.87633 -9.15465 -8.56185 -6.25316 0.03593 0.64468 0.92786 1.27403 1.30469 1.32510 1.60590 1.99708 2.25471 2.31130 2.77139 3.00732 3.16321 3.45626 3.76636 3.87082 3.93765 4.00889 4.16413 4.24163 4.29645 4.30721 4.34548 4.47817 4.55976 4.59895 4.71486 4.72083 4.80877 4.85360 4.90281 5.04848 5.15399 5.23704 5.26573 5.28947 5.36295 5.47396 5.51135 5.61059 5.69378 5.83625 6.14659 6.45660 6.53894 6.80484 7.30422 7.58678 8.54114 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011633 B = 0.004638 C = 0.003776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2406.269825 B = 6035.430130 C = 7413.001577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C -0.110 4.110 4 C 0.154 3.846 5 H 0.113 0.887 6 N -0.710 5.710 7 C 0.566 3.434 8 O -0.548 6.548 9 C -0.232 4.232 10 C -0.033 4.033 11 C -0.190 4.190 12 C -0.041 4.041 13 C -0.250 4.250 14 C 0.167 3.833 15 O -0.204 6.204 16 C -0.402 4.402 17 H 0.091 0.909 18 C 0.026 3.974 19 N -0.913 5.913 20 Si 0.955 3.045 21 H -0.278 1.278 22 H -0.269 1.269 23 H -0.256 1.256 24 C 0.474 3.526 25 O -0.521 6.521 26 O -0.353 6.353 27 C 0.027 3.973 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.047 0.953 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.106 0.894 35 H 0.414 0.586 36 H 0.157 0.843 37 H 0.164 0.836 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.285 0.715 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.201 24.171 0.438 24.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.158 4.158 3 C -0.148 4.148 4 C 0.047 3.953 5 H 0.131 0.869 6 N -0.368 5.368 7 C 0.356 3.644 8 O -0.426 6.426 9 C -0.237 4.237 10 C -0.051 4.051 11 C -0.209 4.209 12 C -0.059 4.059 13 C -0.269 4.269 14 C 0.114 3.886 15 O -0.108 6.108 16 C -0.478 4.478 17 H 0.108 0.892 18 C -0.174 4.174 19 N -0.553 5.553 20 Si 0.779 3.221 21 H -0.204 1.204 22 H -0.194 1.194 23 H -0.180 1.180 24 C 0.316 3.684 25 O -0.410 6.410 26 O -0.268 6.268 27 C -0.066 4.066 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.125 0.875 35 H 0.253 0.747 36 H 0.174 0.826 37 H 0.181 0.819 38 H 0.169 0.831 39 H 0.134 0.866 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.153 0.847 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.306 23.677 -0.334 24.068 hybrid contribution 0.377 -0.457 -0.203 0.626 sum -3.929 23.220 -0.538 23.556 Atomic orbital electron populations 1.21735 0.94349 1.01403 1.02744 1.21513 0.96687 0.95979 1.01588 1.21950 0.90078 0.97837 1.04961 1.20456 0.96945 0.87818 0.90075 0.86940 1.45501 1.69001 1.06331 1.15930 1.18141 0.76942 0.81687 0.87600 1.90870 1.49945 1.60894 1.40886 1.19167 1.17073 0.90322 0.97123 1.21318 0.93376 0.99423 0.91007 1.21197 1.05982 0.94679 0.98999 1.21435 0.93227 0.93966 0.97251 1.21339 1.09933 1.01142 0.94524 1.19665 0.91160 0.90010 0.87787 1.83754 1.71821 1.18109 1.37115 1.20880 1.45440 0.80139 1.01377 0.89204 1.25054 0.96267 0.94427 1.01677 1.69687 1.47997 1.02974 1.34597 0.85405 0.79477 0.78622 0.78583 1.20386 1.19436 1.18037 1.23468 0.76903 0.88371 0.79631 1.90650 1.36214 1.72717 1.41384 1.86490 1.69446 1.28543 1.42292 1.23655 0.99949 0.77535 1.05427 0.91805 0.90904 0.94040 0.93463 0.94214 0.89777 0.87522 0.74711 0.82589 0.81877 0.83115 0.86553 0.90505 0.91998 0.84748 0.91149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.12 -3.52 4.53 30.59 0.14 -3.38 16 3 C -0.11 -2.39 4.85 30.59 0.15 -2.25 16 4 C 0.15 3.89 2.77 44.25 0.12 4.01 16 5 H 0.11 3.23 7.58 -2.39 -0.02 3.21 16 6 N -0.71 -20.45 4.85 -449.27 -2.18 -22.63 16 7 C 0.57 22.00 6.33 86.70 0.55 22.54 16 8 O -0.55 -25.99 12.30 16.86 0.21 -25.78 16 9 C -0.23 -9.13 5.89 -19.99 -0.12 -9.25 16 10 C -0.03 -0.94 9.54 22.52 0.21 -0.72 16 11 C -0.19 -4.94 10.02 22.25 0.22 -4.72 16 12 C -0.04 -1.26 10.03 22.30 0.22 -1.04 16 13 C -0.25 -10.61 9.16 22.36 0.20 -10.41 16 14 C 0.17 7.99 6.66 22.91 0.15 8.14 16 15 O -0.20 -11.62 6.67 0.82 0.01 -11.61 16 16 C -0.40 -24.28 9.95 67.93 0.68 -23.61 16 17 H 0.09 5.51 5.44 -2.91 -0.02 5.50 16 18 C 0.03 1.56 5.49 84.85 0.47 2.03 16 19 N -0.91 -55.63 13.96 21.62 0.30 -55.33 16 20 Si 0.96 49.90 28.62 68.60 1.96 51.86 16 21 H -0.28 -14.40 7.11 99.48 0.71 -13.69 16 22 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 23 H -0.26 -14.08 7.11 99.48 0.71 -13.37 16 24 C 0.47 10.66 7.32 71.24 0.52 11.18 16 25 O -0.52 -13.38 15.59 21.97 0.34 -13.04 16 26 O -0.35 -6.44 10.37 -51.34 -0.53 -6.97 16 27 C 0.03 0.32 10.56 113.37 1.20 1.51 16 28 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.05 1.60 7.84 -2.39 -0.02 1.58 16 32 H 0.04 1.44 5.65 -2.39 -0.01 1.43 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.11 1.82 7.99 -2.38 -0.02 1.80 16 35 H 0.41 10.02 5.82 -92.71 -0.54 9.48 16 36 H 0.16 3.20 6.40 -2.91 -0.02 3.18 16 37 H 0.16 2.80 8.06 -2.92 -0.02 2.77 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 39 H 0.12 5.39 5.64 -2.91 -0.02 5.38 16 40 H 0.29 16.03 8.31 -92.71 -0.77 15.26 16 41 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 42 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.07 0.76 8.13 -2.39 -0.02 0.74 16 Total: -1.00 -76.94 360.46 6.05 -70.89 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.51 Total: 21.27 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.43 Total: -8.66 kcal Atomic # 7 Polarization: -76.08 SS G_CDS: -1.88 Total: -77.96 kcal Atomic # 8 Polarization: -57.43 SS G_CDS: 0.02 Total: -57.41 kcal Atomic # 14 Polarization: 49.90 SS G_CDS: 1.96 Total: 51.86 kcal Total: -76.94 6.05 -70.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000773968607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.986 kcal (2) G-P(sol) polarization free energy of solvation -76.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds