Wall clock time and date at job start Tue Mar 31 2020 13:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38254 * 120.00531 * 2 1 4 4 C 1.50697 * 119.99826 * 0.02562 * 3 2 1 5 5 O 1.45198 * 109.47203 * 179.72502 * 4 3 2 6 6 C 1.34231 * 117.00104 * 180.02562 * 5 4 3 7 7 O 1.20826 * 119.99916 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00149 * 179.97438 * 6 5 4 9 9 C 1.53005 * 109.47244 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.46803 * 180.02562 * 9 8 6 11 11 C 1.53007 * 109.46780 * 180.02562 * 10 9 8 12 12 C 1.50696 * 109.47142 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99647 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00083 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00096 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 120.00040 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47286 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47221 * 119.99656 * 16 14 12 19 19 H 1.48501 * 109.46962 * 239.99590 * 16 14 12 20 20 C 1.38206 * 120.00112 * 179.72820 * 3 2 1 21 21 C 1.38262 * 120.00027 * 0.28373 * 20 3 2 22 22 C 1.38207 * 120.00091 * 359.97075 * 21 20 3 23 23 C 1.38223 * 119.99757 * 180.19669 * 2 1 3 24 24 N 1.48022 * 119.99925 * 0.03872 * 23 2 1 25 25 O 1.21798 * 119.99999 * 186.67187 * 24 23 2 26 26 O 1.21807 * 119.99909 * 6.67798 * 24 23 2 27 27 H 1.08994 * 109.47058 * 96.81820 * 1 2 3 28 28 H 1.08998 * 109.47174 * 216.82333 * 1 2 3 29 29 H 1.09003 * 109.46262 * 336.81574 * 1 2 3 30 30 H 1.09001 * 109.47473 * 59.72363 * 4 3 2 31 31 H 1.09003 * 109.47232 * 299.72580 * 4 3 2 32 32 H 1.08993 * 109.47506 * 300.00358 * 8 6 5 33 33 H 1.09007 * 109.46670 * 60.00098 * 8 6 5 34 34 H 1.09000 * 109.47210 * 300.00444 * 9 8 6 35 35 H 1.08997 * 109.46451 * 60.00329 * 9 8 6 36 36 H 1.08994 * 109.47087 * 299.99918 * 10 9 8 37 37 H 1.08997 * 109.47484 * 60.00795 * 10 9 8 38 38 H 1.09000 * 109.46904 * 300.00076 * 11 10 9 39 39 H 1.08997 * 109.46780 * 59.99976 * 11 10 9 40 40 H 0.96994 * 120.00566 * 179.97438 * 15 14 12 41 41 H 1.07999 * 120.00136 * 180.25066 * 20 3 2 42 42 H 1.08004 * 119.99912 * 179.97438 * 21 20 3 43 43 H 1.07998 * 120.00408 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 1.4450 2.5024 0.0006 5 8 2.3886 3.6059 0.0070 6 6 1.8756 4.8464 0.0089 7 8 0.6778 5.0047 0.0048 8 6 2.7936 6.0414 0.0161 9 6 1.9604 7.3247 0.0162 10 6 2.8925 8.5379 0.0229 11 6 2.0593 9.8212 0.0237 12 6 2.9773 11.0162 0.0296 13 1 4.0480 10.8746 0.0330 14 6 2.4504 12.2903 0.0318 15 7 1.1466 12.4628 0.0282 16 14 3.5884 13.7716 0.0399 17 1 5.0002 13.3113 0.0436 18 1 3.3387 14.5943 -1.1710 19 1 3.3309 14.5870 1.2540 20 6 3.5805 1.1972 0.0057 21 6 4.2717 -0.0003 0.0054 22 6 3.5806 -1.1971 0.0001 23 6 2.1981 -1.1971 -0.0041 24 7 1.4579 -2.4789 -0.0094 25 8 2.0606 -3.5306 0.1096 26 8 0.2461 -2.4819 -0.1328 27 1 -0.3633 -0.1220 -1.0203 28 1 -0.3633 -0.8226 0.6159 29 1 -0.3632 0.9447 0.4046 30 1 0.8150 2.5579 0.8883 31 1 0.8217 2.5625 -0.8916 32 1 3.4191 6.0138 0.9083 33 1 3.4259 6.0192 -0.8716 34 1 1.3352 7.3521 -0.8763 35 1 1.3279 7.3470 0.9037 36 1 3.5179 8.5107 0.9152 37 1 3.5247 8.5154 -0.8648 38 1 1.4335 9.8486 -0.8684 39 1 1.4274 9.8435 0.9115 40 1 0.7759 13.3590 0.0302 41 1 4.1205 2.1324 0.0098 42 1 5.3517 -0.0003 0.0094 43 1 4.1205 -2.1325 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805697784.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:01 Heat of formation + Delta-G solvation = -87.539473 kcal Electronic energy + Delta-G solvation = -25272.648496 eV Core-core repulsion = 21285.643633 eV Total energy + Delta-G solvation = -3987.004863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.65832 -40.93339 -40.03188 -37.06439 -36.98460 -35.09190 -33.99879 -33.06509 -32.71966 -30.12756 -28.74810 -27.37972 -26.38097 -25.72128 -23.17264 -22.51503 -21.85591 -20.72529 -20.13155 -19.24017 -18.98902 -17.99395 -17.75845 -17.04593 -16.86868 -16.37138 -16.24844 -15.89818 -15.29354 -14.75277 -14.49834 -14.46327 -14.00701 -13.57756 -13.36239 -13.16868 -12.89626 -12.76645 -12.68030 -12.41729 -11.94680 -11.81555 -11.74286 -11.72412 -11.50570 -11.28095 -11.08264 -11.04914 -10.68964 -10.68169 -10.55584 -10.49078 -10.03429 -9.73237 -9.56424 -9.36215 -9.07034 -8.37085 -6.01593 -4.04410 -0.59162 0.29241 0.89569 0.96923 2.07776 2.28149 2.66158 3.29018 3.36589 3.40101 3.66073 3.78966 4.11900 4.14120 4.35556 4.43508 4.49280 4.61846 4.70412 4.76590 4.89700 4.98765 5.06330 5.11060 5.13564 5.25349 5.34137 5.43500 5.50631 5.54102 5.61799 5.70774 5.94860 6.06409 6.09999 6.16703 6.36741 6.67250 6.85273 7.08383 7.26519 7.57886 7.66423 7.80170 7.98677 8.40265 9.03320 9.59821 11.09702 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.041649 B = 0.001648 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.124825 B =16982.856033 C =17611.902659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.007 4.007 3 C -0.094 4.094 4 C 0.109 3.891 5 O -0.362 6.362 6 C 0.463 3.537 7 O -0.499 6.499 8 C -0.111 4.111 9 C -0.109 4.109 10 C -0.110 4.110 11 C 0.019 3.981 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.055 3.945 15 N -0.895 5.895 16 Si 0.892 3.108 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.041 4.041 21 C -0.123 4.123 22 C -0.052 4.052 23 C -0.049 4.049 24 N 0.033 4.967 25 O -0.167 6.167 26 O -0.157 6.157 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.260 0.740 41 H 0.155 0.845 42 H 0.151 0.849 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.004 -29.079 -0.069 29.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.009 4.009 3 C -0.095 4.095 4 C 0.035 3.965 5 O -0.280 6.280 6 C 0.306 3.694 7 O -0.385 6.385 8 C -0.148 4.148 9 C -0.147 4.147 10 C -0.148 4.148 11 C -0.018 4.018 12 C -0.560 4.560 13 H 0.074 0.926 14 C -0.146 4.146 15 N -0.534 5.534 16 Si 0.720 3.280 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.059 4.059 21 C -0.141 4.141 22 C -0.071 4.071 23 C -0.132 4.132 24 N 0.550 4.450 25 O -0.381 6.381 26 O -0.372 6.372 27 H 0.112 0.888 28 H 0.120 0.880 29 H 0.096 0.904 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.070 0.930 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.833 -28.328 -0.067 28.737 hybrid contribution 0.281 0.442 -0.006 0.524 sum 5.114 -27.886 -0.073 28.352 Atomic orbital electron populations 1.21404 0.88241 1.04993 1.05068 1.19497 0.98096 0.89682 0.93583 1.19454 0.94303 0.92686 1.03081 1.21612 0.89895 0.80929 1.04066 1.86441 1.40988 1.15602 1.84923 1.24286 0.89535 0.83627 0.71955 1.90701 1.17089 1.86138 1.44586 1.21646 0.98108 0.89405 1.05643 1.21599 0.98277 0.91477 1.03341 1.21651 0.97924 0.94735 1.00441 1.19106 0.95072 0.90214 0.97398 1.21300 0.93106 0.91060 1.50517 0.92629 1.25042 0.95000 0.99145 0.95375 1.69975 1.10591 1.21966 1.50859 0.86546 0.81026 0.82885 0.77586 1.19764 1.21025 1.21031 1.21589 0.93409 0.99815 0.91067 1.21267 1.01329 0.90608 1.00924 1.21113 0.90860 1.01087 0.94001 1.20817 0.92449 0.83140 1.16831 1.43531 1.01134 1.02673 0.97654 1.94546 1.70117 1.19905 1.53497 1.94492 0.96227 1.93775 1.52657 0.88754 0.87993 0.90436 0.88985 0.88966 0.87696 0.87699 0.91461 0.91461 0.93169 0.93162 0.96524 0.96522 0.93044 0.82695 0.83144 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.36 36.01 0.30 -0.65 16 2 C -0.01 -0.05 5.88 -104.62 -0.62 -0.67 16 3 C -0.09 -0.68 5.88 -104.63 -0.62 -1.29 16 4 C 0.11 0.88 4.48 36.00 0.16 1.04 16 5 O -0.36 -3.41 8.69 -39.26 -0.34 -3.76 16 6 C 0.46 5.53 7.96 36.00 0.29 5.82 16 7 O -0.50 -7.59 15.73 -18.75 -0.29 -7.88 16 8 C -0.11 -1.25 5.81 -27.88 -0.16 -1.42 16 9 C -0.11 -1.73 4.51 -26.73 -0.12 -1.85 16 10 C -0.11 -2.09 5.15 -26.73 -0.14 -2.23 16 11 C 0.02 0.48 4.97 -27.88 -0.14 0.35 16 12 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 13 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.89 -26.85 13.29 55.43 0.74 -26.11 16 16 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C -0.04 -0.24 9.38 -39.58 -0.37 -0.61 16 21 C -0.12 -0.59 10.05 -39.58 -0.40 -0.99 16 22 C -0.05 -0.32 9.56 -39.59 -0.38 -0.70 16 23 C -0.05 -0.41 6.83 -79.94 -0.55 -0.96 16 24 N 0.03 0.34 4.45 33.96 0.15 0.50 16 25 O -0.17 -1.85 18.47 -29.46 -0.54 -2.39 16 26 O -0.16 -1.69 15.37 -29.46 -0.45 -2.14 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.10 0.76 5.89 -51.93 -0.31 0.45 16 29 H 0.08 0.44 6.41 -51.93 -0.33 0.11 16 30 H 0.09 0.72 7.49 -51.93 -0.39 0.33 16 31 H 0.09 0.72 8.13 -51.93 -0.42 0.30 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.10 1.00 8.14 -51.92 -0.42 0.58 16 34 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 35 H 0.07 1.13 8.10 -51.93 -0.42 0.71 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 41 H 0.16 0.78 6.99 -52.49 -0.37 0.41 16 42 H 0.15 0.31 8.06 -52.48 -0.42 -0.11 16 43 H 0.15 0.74 7.63 -52.49 -0.40 0.34 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -33.08 370.08 -9.32 -42.40 By element: Atomic # 1 Polarization: 0.98 SS G_CDS: -5.98 Total: -5.00 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -3.14 Total: -17.56 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.89 Total: -25.62 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: -1.63 Total: -16.17 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.08 -9.32 -42.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805697784.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.142 kcal (2) G-P(sol) polarization free energy of solvation -33.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds