Wall clock time and date at job start Tue Mar 31 2020 12:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47142 * 239.99972 * 3 2 1 5 5 H 1.48503 * 109.46995 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47153 * 119.99341 * 3 2 1 7 7 C 1.37878 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00083 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.46960 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47143 * 180.02562 * 10 9 7 12 12 C 1.52994 * 109.47478 * 180.02562 * 11 10 9 13 13 C 1.50694 * 109.47484 * 180.02562 * 12 11 10 14 14 O 1.20834 * 120.00194 * 359.97438 * 13 12 11 15 15 O 1.34246 * 120.00403 * 179.97438 * 13 12 11 16 16 C 1.35978 * 117.00329 * 175.08569 * 15 13 12 17 17 C 1.38716 * 120.00195 * 256.81532 * 16 15 13 18 18 C 1.38105 * 120.00484 * 179.72152 * 17 16 15 19 19 C 1.38722 * 119.99836 * 0.57631 * 18 17 16 20 20 O 1.35958 * 120.00186 * 179.67669 * 19 18 17 21 21 C 1.42894 * 117.00291 * 0.02562 * 20 19 18 22 22 C 1.50700 * 109.47369 * 179.97438 * 21 20 19 23 23 N 1.34778 * 119.99986 * 180.02562 * 22 21 20 24 24 O 1.21282 * 119.99840 * 0.02562 * 22 21 20 25 25 C 1.38719 * 119.99722 * 359.69778 * 19 18 17 26 26 C 1.38108 * 119.99772 * 0.02562 * 25 19 18 27 27 H 0.96995 * 119.99843 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.46785 * 60.00219 * 9 7 2 29 29 H 1.08997 * 109.47539 * 300.00621 * 9 7 2 30 30 H 1.08999 * 109.47062 * 60.01026 * 10 9 7 31 31 H 1.08999 * 109.47466 * 299.99941 * 10 9 7 32 32 H 1.08995 * 109.47133 * 59.99820 * 11 10 9 33 33 H 1.09005 * 109.46928 * 300.00319 * 11 10 9 34 34 H 1.09004 * 109.47270 * 59.99815 * 12 11 10 35 35 H 1.09005 * 109.46952 * 299.99877 * 12 11 10 36 36 H 1.08005 * 119.99684 * 359.97438 * 17 16 15 37 37 H 1.07998 * 120.00893 * 180.25346 * 18 17 16 38 38 H 1.08997 * 109.46896 * 300.00338 * 21 20 19 39 39 H 1.09009 * 109.46752 * 59.99841 * 21 20 19 40 40 H 0.97003 * 119.99750 * 359.97438 * 23 22 21 41 41 H 0.96996 * 120.00196 * 180.02562 * 23 22 21 42 42 H 1.08002 * 120.00219 * 179.97438 * 25 19 18 43 43 H 1.08005 * 119.99742 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4803 -4.9871 0.0020 12 6 2.4745 -6.1500 0.0024 13 6 1.7211 -7.4551 0.0023 14 8 0.5127 -7.4551 0.0024 15 8 2.3922 -8.6177 0.0021 16 6 1.6555 -9.7559 0.1058 17 6 1.5960 -10.4360 1.3133 18 6 0.8432 -11.5889 1.4202 19 6 0.1560 -12.0734 0.3168 20 8 -0.5798 -13.2119 0.4203 21 6 -0.6011 -13.8571 1.6952 22 6 -1.4614 -15.0920 1.6190 23 7 -1.6293 -15.8647 2.7104 24 8 -2.0026 -15.3906 0.5755 25 6 0.2201 -11.3964 -0.8922 26 6 0.9684 -10.2404 -0.9975 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5575 -0.8881 29 1 0.6247 -2.5563 0.8919 30 1 2.8725 -3.6040 0.8910 31 1 2.8713 -3.6047 -0.8890 32 1 0.8533 -5.0450 -0.8877 33 1 0.8540 -5.0447 0.8923 34 1 3.1013 -6.0920 0.8923 35 1 3.1011 -6.0926 -0.8877 36 1 2.1352 -10.0617 2.1710 37 1 0.7935 -12.1162 2.3614 38 1 0.4137 -14.1375 1.9774 39 1 -1.0102 -13.1751 2.4407 40 1 -1.1961 -15.6261 3.5449 41 1 -2.1827 -16.6598 2.6613 42 1 -0.3145 -11.7738 -1.7515 43 1 1.0186 -9.7135 -1.9390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805886580.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:06 Heat of formation + Delta-G solvation = -170.000367 kcal Electronic energy + Delta-G solvation = -24888.682734 eV Core-core repulsion = 20898.102098 eV Total energy + Delta-G solvation = -3990.580635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.38794 -41.32711 -40.16065 -38.82439 -37.32614 -36.63786 -34.81376 -34.65336 -32.32985 -31.83988 -30.73772 -29.12750 -27.67751 -25.09353 -24.25578 -23.41169 -22.13071 -21.72030 -21.41054 -19.58981 -19.18022 -18.71363 -18.37830 -17.97753 -17.77131 -17.40608 -17.36998 -16.67862 -16.49460 -15.90826 -15.66572 -15.44219 -15.22699 -15.01332 -14.57212 -14.54553 -14.17433 -13.91312 -13.74256 -13.63788 -13.42146 -13.29515 -12.83107 -12.73743 -12.38602 -12.22427 -12.17796 -12.09689 -11.72915 -11.68080 -11.37181 -11.29606 -11.14919 -11.06843 -10.76848 -10.52418 -10.19110 -9.25911 -8.17132 -6.28993 -0.00961 0.17186 1.07765 1.42157 1.45713 1.45754 1.53478 1.60358 1.74268 2.43518 2.63224 2.79936 3.15910 3.61349 3.63821 3.77089 3.86707 3.94313 4.03799 4.09489 4.10141 4.14219 4.29025 4.44046 4.55777 4.64929 4.78618 4.82260 4.85549 4.90277 5.09185 5.15169 5.23004 5.29275 5.33709 5.38101 5.57075 5.62321 5.79493 5.80232 5.89895 6.17063 6.26944 6.39546 6.78947 6.89517 7.23844 7.40676 8.94668 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034485 B = 0.001573 C = 0.001550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.751773 B =17798.853008 C =18062.091995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.101 4.101 12 C -0.099 4.099 13 C 0.460 3.540 14 O -0.527 6.527 15 O -0.289 6.289 16 C 0.018 3.982 17 C -0.079 4.079 18 C -0.185 4.185 19 C 0.127 3.873 20 O -0.315 6.315 21 C 0.028 3.972 22 C 0.516 3.484 23 N -0.825 5.825 24 O -0.586 6.586 25 C -0.148 4.148 26 C -0.091 4.091 27 H 0.262 0.738 28 H -0.014 1.014 29 H -0.013 1.013 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.158 0.842 37 H 0.179 0.821 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.424 0.576 41 H 0.414 0.586 42 H 0.142 0.858 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.452 -33.433 9.085 35.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.085 0.915 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.139 4.139 12 C -0.135 4.135 13 C 0.305 3.695 14 O -0.414 6.414 15 O -0.204 6.204 16 C -0.023 4.023 17 C -0.098 4.098 18 C -0.204 4.204 19 C 0.081 3.919 20 O -0.228 6.228 21 C -0.049 4.049 22 C 0.300 3.700 23 N -0.392 5.392 24 O -0.465 6.465 25 C -0.167 4.167 26 C -0.109 4.109 27 H 0.071 0.929 28 H 0.004 0.996 29 H 0.005 0.995 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.176 0.824 37 H 0.196 0.804 38 H 0.151 0.849 39 H 0.144 0.856 40 H 0.256 0.744 41 H 0.247 0.753 42 H 0.160 0.840 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 4.554 -33.481 8.206 34.772 hybrid contribution -0.378 0.801 0.160 0.900 sum 4.176 -32.680 8.366 33.992 Atomic orbital electron populations 1.70122 1.08016 1.27748 1.51852 1.26061 0.95747 1.03632 0.94805 0.85462 0.78182 0.77844 0.79319 1.19013 1.21195 1.18899 1.21741 0.93810 0.92247 1.50305 0.91504 1.19060 0.94709 0.93673 0.94496 1.21439 0.97881 0.92234 1.01793 1.21370 0.97454 0.93237 1.01818 1.21537 0.98807 0.84704 1.08498 1.24911 0.87344 0.86292 0.70921 1.90700 1.17271 1.87704 1.45725 1.84690 1.39343 1.13055 1.83352 1.18795 1.00096 0.88118 0.95320 1.21266 0.97345 0.95155 0.95989 1.21449 1.00564 0.98877 0.99482 1.19134 0.91711 0.86293 0.94758 1.86144 1.66310 1.36215 1.34109 1.22876 1.03057 0.93429 0.85577 1.20456 0.80790 0.84868 0.83869 1.43488 1.53718 1.29122 1.12849 1.90807 1.50404 1.73372 1.31934 1.20419 1.02695 0.95984 0.97578 1.21226 0.94968 0.95853 0.98874 0.92919 0.99605 0.99468 0.91600 0.91787 0.93231 0.93038 0.84603 0.84971 0.82447 0.80404 0.84929 0.85579 0.74377 0.75346 0.84033 0.84792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.33 13.29 21.45 0.28 -58.04 16 2 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 3 Si 0.97 44.31 29.54 68.60 2.03 46.33 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.54 -30.96 9.11 25.60 0.23 -30.72 16 8 H 0.07 3.56 7.74 -2.92 -0.02 3.53 16 9 C 0.02 0.95 4.97 29.85 0.15 1.10 16 10 C -0.10 -3.72 5.15 30.59 0.16 -3.57 16 11 C -0.10 -3.39 4.50 30.59 0.14 -3.25 16 12 C -0.10 -2.31 5.81 29.84 0.17 -2.14 16 13 C 0.46 12.61 7.83 71.23 0.56 13.17 16 14 O -0.53 -18.59 15.48 21.94 0.34 -18.25 16 15 O -0.29 -7.01 10.03 4.11 0.04 -6.97 16 16 C 0.02 0.42 5.13 22.50 0.12 0.53 16 17 C -0.08 -1.38 9.98 22.35 0.22 -1.16 16 18 C -0.19 -2.51 9.03 22.35 0.20 -2.31 16 19 C 0.13 2.35 6.69 22.50 0.15 2.50 16 20 O -0.31 -5.91 9.67 -74.04 -0.72 -6.62 16 21 C 0.03 0.22 5.22 71.24 0.37 0.60 16 22 C 0.52 6.44 8.18 87.66 0.72 7.16 16 23 N -0.82 -1.79 8.87 -173.53 -1.54 -3.33 16 24 O -0.59 -14.97 17.34 16.00 0.28 -14.70 16 25 C -0.15 -3.20 9.98 22.35 0.22 -2.98 16 26 C -0.09 -2.12 9.56 22.35 0.21 -1.91 16 27 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 28 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 29 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 30 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.05 1.87 8.10 -2.38 -0.02 1.85 16 34 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.13 2.48 8.14 -2.38 -0.02 2.46 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 37 H 0.18 0.73 6.29 -2.91 -0.02 0.71 16 38 H 0.13 0.08 7.66 -2.39 -0.02 0.06 16 39 H 0.13 0.26 7.66 -2.38 -0.02 0.24 16 40 H 0.42 -2.51 8.83 -92.71 -0.82 -3.33 16 41 H 0.41 0.67 8.93 -92.71 -0.83 -0.16 16 42 H 0.14 2.85 8.06 -2.91 -0.02 2.82 16 43 H 0.13 3.02 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -87.55 376.79 4.20 -83.35 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -0.60 Total: 1.04 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 4.09 Total: -22.82 kcal Atomic # 7 Polarization: -60.12 SS G_CDS: -1.25 Total: -61.37 kcal Atomic # 8 Polarization: -46.48 SS G_CDS: -0.06 Total: -46.54 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -87.55 4.20 -83.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805886580.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.648 kcal (2) G-P(sol) polarization free energy of solvation -87.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds