Wall clock time and date at job start Tue Mar 31 2020 13:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 C 1.53004 * 109.47142 * 240.00371 * 2 1 3 5 5 C 1.50693 * 109.47389 * 59.99558 * 4 2 1 6 6 H 1.08009 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00096 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99566 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00135 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47303 * 89.99413 * 9 7 5 11 11 H 1.48499 * 109.47101 * 210.00026 * 9 7 5 12 12 H 1.48500 * 109.46945 * 329.99827 * 9 7 5 13 13 C 1.52997 * 109.47335 * 120.00285 * 2 1 3 14 14 N 1.46903 * 109.46878 * 300.00062 * 13 2 1 15 15 C 1.46902 * 110.99857 * 180.02562 * 14 13 2 16 16 C 1.50695 * 109.47217 * 180.02562 * 15 14 13 17 17 C 1.35222 * 126.41920 * 270.00281 * 16 15 14 18 18 Cl 1.73593 * 125.70049 * 359.97438 * 17 16 15 19 19 N 1.33548 * 108.60310 * 179.97438 * 17 16 15 20 20 C 1.32597 * 109.17230 * 359.97438 * 19 17 16 21 21 C 1.40913 * 132.30618 * 180.02562 * 20 19 17 22 22 C 1.36038 * 119.33172 * 179.97438 * 21 20 19 23 23 C 1.40465 * 119.68689 * 359.97438 * 22 21 20 24 24 C 1.34960 * 120.29377 * 359.97395 * 23 22 21 25 25 N 1.36464 * 120.61465 * 0.04383 * 24 23 22 26 26 H 1.08998 * 109.46630 * 299.99922 * 1 2 3 27 27 H 1.09002 * 109.47210 * 60.00052 * 1 2 3 28 28 H 1.09003 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47153 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46982 * 300.00087 * 3 2 1 31 31 H 1.09001 * 109.46825 * 60.00186 * 3 2 1 32 32 H 1.08995 * 109.47003 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.46811 * 299.99580 * 4 2 1 34 34 H 0.97002 * 119.99538 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47550 * 180.02562 * 13 2 1 36 36 H 1.09003 * 109.47443 * 59.99914 * 13 2 1 37 37 H 1.00891 * 110.99988 * 303.94993 * 14 13 2 38 38 H 1.08995 * 109.47647 * 59.99895 * 15 14 13 39 39 H 1.09000 * 109.46922 * 299.99640 * 15 14 13 40 40 H 1.08002 * 120.33467 * 359.97438 * 21 20 19 41 41 H 1.07996 * 120.15916 * 180.25151 * 22 21 20 42 42 H 1.08003 * 119.85049 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.69520 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 1.4332 0.1388 -4.8058 9 14 2.9452 -2.0002 -3.9035 10 1 2.0867 -3.2111 -3.9494 11 1 3.7376 -1.9073 -5.1560 12 1 3.8653 -2.0896 -2.7413 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6946 3.6702 16 6 1.5003 0.0419 4.8771 17 6 2.1104 1.0631 5.5200 18 17 3.6433 1.7572 5.0934 19 7 1.3366 1.4487 6.5378 20 6 0.2436 0.6985 6.5625 21 6 -0.8791 0.6857 7.4140 22 6 -1.8722 -0.2176 7.1939 23 6 -1.7657 -1.1217 6.1242 24 6 -0.6847 -1.0965 5.3166 25 7 0.3188 -0.1959 5.5264 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7216 -1.2491 33 1 1.6768 -1.7489 -1.2493 34 1 1.6675 -0.1926 -5.6868 35 1 3.1300 -0.7209 1.2494 36 1 1.6768 -1.7490 1.2492 37 1 1.8198 0.9434 2.4402 38 1 3.1118 -0.6941 3.6869 39 1 1.6588 -1.7222 3.6872 40 1 -0.9503 1.3859 8.2332 41 1 -2.7405 -0.2365 7.8358 42 1 -2.5524 -1.8403 5.9473 43 1 -0.6130 -1.7959 4.4967 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000808429074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:08 Heat of formation + Delta-G solvation = 73.209054 kcal Electronic energy + Delta-G solvation = -24426.859300 eV Core-core repulsion = 20919.826933 eV Total energy + Delta-G solvation = -3507.032368 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.17540 -38.09518 -37.68543 -36.64648 -34.99939 -33.67222 -32.20564 -30.48271 -29.68961 -27.69705 -26.41185 -26.22596 -24.42032 -23.76334 -22.84922 -21.89640 -21.24006 -18.24456 -17.57508 -17.28379 -16.80832 -16.45178 -16.36425 -15.56709 -15.04213 -14.71704 -14.58638 -14.40804 -14.03246 -13.43880 -13.11440 -12.94454 -12.92672 -12.75492 -12.43106 -12.22201 -12.01716 -11.87639 -11.51097 -11.41087 -11.32254 -11.10449 -10.97487 -10.89609 -10.53296 -10.40699 -10.36653 -9.82400 -9.71732 -9.36194 -8.98649 -8.93287 -8.51300 -8.39072 -8.07021 -6.01325 -3.97655 0.40597 0.86297 1.51017 2.32458 2.39718 3.16838 3.30424 3.38497 3.41271 3.87013 4.22263 4.30634 4.40990 4.46676 4.58892 4.68247 4.75598 5.06435 5.14368 5.31366 5.34816 5.48392 5.56103 5.61708 5.73153 5.79257 5.83421 5.93720 6.08240 6.11704 6.18430 6.37403 6.55855 6.63445 6.66325 6.75753 7.00420 7.08329 7.12833 7.20537 7.29553 7.35309 7.40537 7.50567 7.83520 8.58269 9.04643 9.61596 11.11820 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.002986 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.989217 B = 9375.008026 C =10235.278385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.048 4.048 3 C -0.131 4.131 4 C -0.003 4.003 5 C -0.507 4.507 6 H 0.078 0.922 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.876 3.124 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.067 3.933 14 N -0.682 5.682 15 C 0.132 3.868 16 C -0.029 4.029 17 C 0.110 3.890 18 Cl 0.002 6.998 19 N -0.485 5.485 20 C 0.238 3.762 21 C -0.084 4.084 22 C -0.093 4.093 23 C -0.146 4.146 24 C 0.075 3.925 25 N -0.346 5.346 26 H 0.042 0.958 27 H 0.060 0.940 28 H 0.038 0.962 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.035 0.965 32 H 0.013 0.987 33 H 0.010 0.990 34 H 0.261 0.739 35 H 0.028 0.972 36 H 0.067 0.933 37 H 0.346 0.654 38 H 0.060 0.940 39 H 0.081 0.919 40 H 0.152 0.848 41 H 0.144 0.856 42 H 0.154 0.846 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -3.068 25.605 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.048 4.048 3 C -0.189 4.189 4 C -0.041 4.041 5 C -0.545 4.545 6 H 0.096 0.904 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.704 3.296 10 H -0.205 1.205 11 H -0.216 1.216 12 H -0.192 1.192 13 C -0.061 4.061 14 N -0.316 5.316 15 C 0.002 3.998 16 C -0.144 4.144 17 C -0.050 4.050 18 Cl 0.031 6.969 19 N -0.206 5.206 20 C -0.006 4.006 21 C -0.104 4.104 22 C -0.117 4.117 23 C -0.167 4.167 24 C -0.048 4.048 25 N -0.018 5.018 26 H 0.061 0.939 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.028 0.972 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.166 0.834 38 H 0.077 0.923 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.171 0.829 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.120 -2.724 25.847 26.315 hybrid contribution 1.495 -1.101 -0.876 2.053 sum -2.625 -3.825 24.971 25.399 Atomic orbital electron populations 1.21612 0.94566 1.00540 1.00717 1.20420 0.96161 0.95150 0.93115 1.21785 0.99731 0.96347 1.01003 1.19622 0.95861 0.95393 0.93246 1.21130 1.31480 1.13251 0.88670 0.90429 1.25019 0.95798 0.96747 0.96025 1.69911 1.46129 1.40607 0.97839 0.86846 0.81287 0.84010 0.77505 1.20466 1.21572 1.19167 1.22179 0.96699 0.98049 0.89204 1.60661 1.63565 1.07001 1.00326 1.20258 0.97639 0.96806 0.85081 1.20591 0.88123 1.04277 1.01457 1.20549 0.92193 0.96025 0.96219 1.98388 1.23428 1.83818 1.91290 1.70395 1.02487 1.26332 1.21405 1.20682 0.96878 0.90929 0.92080 1.20250 0.90244 1.00854 0.99102 1.21086 0.98775 0.94333 0.97504 1.20867 0.97897 1.01805 0.96101 1.21726 0.87729 0.93919 1.01395 1.42509 1.13884 1.23782 1.21595 0.93855 0.92053 0.94268 0.93991 0.91084 0.94627 0.96878 0.97180 0.92878 0.95378 0.91420 0.83430 0.92256 0.90038 0.82995 0.83783 0.82879 0.81478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 2 C -0.05 -0.90 0.60 -154.50 -0.09 -0.99 16 3 C -0.13 -2.40 7.89 37.16 0.29 -2.11 16 4 C 0.00 -0.08 3.11 -27.88 -0.09 -0.16 16 5 C -0.51 -13.82 8.20 -34.44 -0.28 -14.10 16 6 H 0.08 2.27 5.92 -52.48 -0.31 1.95 16 7 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.91 -27.60 13.96 55.43 0.77 -26.83 16 9 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 13 C 0.07 1.03 4.65 -3.82 -0.02 1.01 16 14 N -0.68 -9.18 5.70 -115.06 -0.66 -9.83 16 15 C 0.13 1.52 5.94 -4.98 -0.03 1.49 16 16 C -0.03 -0.36 6.55 -81.40 -0.53 -0.89 16 17 C 0.11 1.49 7.67 -17.88 -0.14 1.35 16 18 Cl 0.00 0.03 28.87 -51.86 -1.50 -1.47 16 19 N -0.48 -6.91 11.32 -9.91 -0.11 -7.02 16 20 C 0.24 2.88 7.81 -156.03 -1.22 1.66 16 21 C -0.08 -0.71 10.11 -39.36 -0.40 -1.11 16 22 C -0.09 -0.57 10.07 -39.53 -0.40 -0.96 16 23 C -0.15 -0.90 9.99 -39.91 -0.40 -1.30 16 24 C 0.07 0.63 10.85 -16.65 -0.18 0.45 16 25 N -0.35 -3.94 2.95 -58.42 -0.17 -4.11 16 26 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 27 H 0.06 1.29 6.62 -51.93 -0.34 0.94 16 28 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 1.47 6.62 -51.93 -0.34 1.13 16 31 H 0.03 0.57 6.57 -51.93 -0.34 0.23 16 32 H 0.01 0.30 7.20 -51.93 -0.37 -0.07 16 33 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 34 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.35 4.88 6.76 -39.30 -0.27 4.61 16 38 H 0.06 0.66 7.90 -51.93 -0.41 0.25 16 39 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 42 H 0.15 0.50 8.06 -52.48 -0.42 0.08 16 43 H 0.17 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -32.07 361.99 -10.30 -42.37 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.15 Total: 0.39 kcal Atomic # 6 Polarization: -12.53 SS G_CDS: -3.28 Total: -15.81 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.17 Total: -47.79 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -1.50 Total: -1.47 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.07 -10.30 -42.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808429074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.584 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds