Wall clock time and date at job start Tue Mar 31 2020 13:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 C 1.53004 * 109.47142 * 240.00371 * 2 1 3 5 5 C 1.50693 * 109.47389 * 59.99558 * 4 2 1 6 6 H 1.08009 * 119.99751 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00096 * 179.97438 * 5 4 2 8 8 N 1.31516 * 119.99566 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00135 * 0.02562 * 7 5 4 10 10 H 1.48502 * 109.47303 * 89.99413 * 9 7 5 11 11 H 1.48499 * 109.47101 * 210.00026 * 9 7 5 12 12 H 1.48500 * 109.46945 * 329.99827 * 9 7 5 13 13 C 1.52997 * 109.47335 * 120.00285 * 2 1 3 14 14 N 1.46903 * 109.46878 * 300.00062 * 13 2 1 15 15 C 1.46902 * 110.99857 * 180.02562 * 14 13 2 16 16 C 1.50695 * 109.47217 * 180.02562 * 15 14 13 17 17 C 1.35222 * 126.41920 * 270.00281 * 16 15 14 18 18 Cl 1.73593 * 125.70049 * 359.97438 * 17 16 15 19 19 N 1.33548 * 108.60310 * 179.97438 * 17 16 15 20 20 C 1.32597 * 109.17230 * 359.97438 * 19 17 16 21 21 C 1.40913 * 132.30618 * 180.02562 * 20 19 17 22 22 C 1.36038 * 119.33172 * 179.97438 * 21 20 19 23 23 C 1.40465 * 119.68689 * 359.97438 * 22 21 20 24 24 C 1.34960 * 120.29377 * 359.97395 * 23 22 21 25 25 N 1.36464 * 120.61465 * 0.04383 * 24 23 22 26 26 H 1.08998 * 109.46630 * 299.99922 * 1 2 3 27 27 H 1.09002 * 109.47210 * 60.00052 * 1 2 3 28 28 H 1.09003 * 109.46925 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47153 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46982 * 300.00087 * 3 2 1 31 31 H 1.09001 * 109.46825 * 60.00186 * 3 2 1 32 32 H 1.08995 * 109.47003 * 180.02562 * 4 2 1 33 33 H 1.09003 * 109.46811 * 299.99580 * 4 2 1 34 34 H 0.97002 * 119.99538 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47550 * 180.02562 * 13 2 1 36 36 H 1.09003 * 109.47443 * 59.99914 * 13 2 1 37 37 H 1.00891 * 110.99988 * 303.94993 * 14 13 2 38 38 H 1.08995 * 109.47647 * 59.99895 * 15 14 13 39 39 H 1.09000 * 109.46922 * 299.99640 * 15 14 13 40 40 H 1.08002 * 120.33467 * 359.97438 * 21 20 19 41 41 H 1.07996 * 120.15916 * 180.25151 * 22 21 20 42 42 H 1.08003 * 119.85049 * 179.97438 * 23 22 21 43 43 H 1.08002 * 119.69520 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8712 -0.4816 -3.7320 8 7 1.4332 0.1388 -4.8058 9 14 2.9452 -2.0002 -3.9035 10 1 2.0867 -3.2111 -3.9494 11 1 3.7376 -1.9073 -5.1560 12 1 3.8653 -2.0896 -2.7413 13 6 2.0401 -0.7213 1.2492 14 7 1.5504 -0.0288 2.4486 15 6 2.0220 -0.6946 3.6702 16 6 1.5003 0.0419 4.8771 17 6 2.1104 1.0631 5.5200 18 17 3.6433 1.7572 5.0934 19 7 1.3366 1.4487 6.5378 20 6 0.2436 0.6985 6.5625 21 6 -0.8791 0.6857 7.4140 22 6 -1.8722 -0.2176 7.1939 23 6 -1.7657 -1.1217 6.1242 24 6 -0.6847 -1.0965 5.3166 25 7 0.3188 -0.1959 5.5264 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 3.1300 -0.7216 -1.2491 33 1 1.6768 -1.7489 -1.2493 34 1 1.6675 -0.1926 -5.6868 35 1 3.1300 -0.7209 1.2494 36 1 1.6768 -1.7490 1.2492 37 1 1.8198 0.9434 2.4402 38 1 3.1118 -0.6941 3.6869 39 1 1.6588 -1.7222 3.6872 40 1 -0.9503 1.3859 8.2332 41 1 -2.7405 -0.2365 7.8358 42 1 -2.5524 -1.8403 5.9473 43 1 -0.6130 -1.7959 4.4967 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000808429074.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:07 Heat of formation + Delta-G solvation = 54.448463 kcal Electronic energy + Delta-G solvation = -24427.672821 eV Core-core repulsion = 20919.826933 eV Total energy + Delta-G solvation = -3507.845888 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.94073 -39.31200 -38.56687 -37.50067 -36.18781 -34.68363 -34.05204 -31.23585 -30.64383 -29.45606 -27.94057 -27.30293 -25.66381 -24.52057 -23.65733 -23.50229 -22.04536 -19.60012 -18.86282 -18.53537 -17.94262 -17.28599 -17.03887 -16.53189 -16.35232 -15.95846 -15.61580 -15.45603 -15.27205 -14.87808 -14.61231 -14.23039 -14.01957 -13.79214 -13.58552 -13.43707 -13.23904 -12.80374 -12.75719 -12.60863 -12.45883 -12.34880 -12.24119 -12.20742 -12.08139 -11.97765 -11.70388 -11.36955 -11.25732 -11.00587 -10.83584 -10.68827 -9.75540 -9.42048 -8.84912 -8.20571 -6.21042 -0.20246 0.16269 0.64763 1.37015 1.39215 1.49899 1.51307 1.64760 2.40737 2.52205 3.12750 3.14753 3.30987 3.62698 3.72180 3.85479 4.00790 4.10821 4.18277 4.20246 4.30158 4.42488 4.49915 4.66798 4.73793 4.78286 4.90461 4.91992 5.03196 5.08208 5.14081 5.17072 5.17851 5.27268 5.36670 5.45609 5.51335 5.54680 5.61637 5.74483 5.81474 5.94330 6.02145 6.32091 6.43268 6.55879 6.86745 7.41464 8.95869 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.017887 B = 0.002986 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.989217 B = 9375.008026 C =10235.278385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.048 4.048 3 C -0.125 4.125 4 C -0.002 4.002 5 C -0.503 4.503 6 H 0.042 0.958 7 C -0.001 4.001 8 N -0.957 5.957 9 Si 0.942 3.058 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.247 1.247 13 C 0.080 3.920 14 N -0.682 5.682 15 C 0.139 3.861 16 C -0.041 4.041 17 C 0.091 3.909 18 Cl -0.002 7.002 19 N -0.528 5.528 20 C 0.225 3.775 21 C -0.110 4.110 22 C -0.070 4.070 23 C -0.131 4.131 24 C 0.048 3.952 25 N -0.349 5.349 26 H 0.060 0.940 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.035 0.965 31 H 0.058 0.942 32 H 0.014 0.986 33 H 0.017 0.983 34 H 0.262 0.738 35 H 0.033 0.967 36 H 0.079 0.921 37 H 0.341 0.659 38 H 0.063 0.937 39 H 0.098 0.902 40 H 0.165 0.835 41 H 0.184 0.816 42 H 0.191 0.809 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.829 -5.566 27.984 28.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.048 4.048 3 C -0.182 4.182 4 C -0.039 4.039 5 C -0.542 4.542 6 H 0.060 0.940 7 C -0.196 4.196 8 N -0.599 5.599 9 Si 0.767 3.233 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.170 1.170 13 C -0.049 4.049 14 N -0.314 5.314 15 C 0.010 3.990 16 C -0.157 4.157 17 C -0.068 4.068 18 Cl 0.027 6.973 19 N -0.251 5.251 20 C -0.019 4.019 21 C -0.130 4.130 22 C -0.094 4.094 23 C -0.151 4.151 24 C -0.073 4.073 25 N -0.020 5.020 26 H 0.079 0.921 27 H 0.044 0.956 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.035 0.965 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.081 0.919 39 H 0.117 0.883 40 H 0.182 0.818 41 H 0.201 0.799 42 H 0.208 0.792 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.046 -5.235 28.254 29.174 hybrid contribution 1.574 -0.281 -1.514 2.202 sum -3.472 -5.516 26.740 27.523 Atomic orbital electron populations 1.21488 0.94590 1.00575 0.99740 1.20348 0.96088 0.95089 0.93287 1.21696 0.99869 0.96316 1.00356 1.19582 0.95700 0.95524 0.93140 1.21440 1.30035 1.12091 0.90593 0.94016 1.25949 0.97622 1.00320 0.95728 1.70077 1.48408 1.42919 0.98473 0.85775 0.79678 0.79946 0.77918 1.19399 1.21775 1.17049 1.21924 0.96841 0.98031 0.88096 1.60608 1.63620 1.06706 1.00469 1.20241 0.97842 0.97200 0.83728 1.20573 0.88791 1.04429 1.01876 1.20743 0.92441 0.96809 0.96834 1.98369 1.23673 1.83982 1.91310 1.70318 1.03926 1.28204 1.22650 1.21241 0.97155 0.90735 0.92735 1.20608 0.90112 1.02625 0.99625 1.21617 0.98646 0.92139 0.96973 1.21437 0.97519 1.01461 0.94660 1.22282 0.87931 0.94194 1.02916 1.42641 1.14062 1.24094 1.21212 0.92125 0.95602 0.93658 0.93628 0.94590 0.92364 0.96793 0.96505 0.92951 0.94917 0.90258 0.83971 0.91935 0.88340 0.81757 0.79900 0.79202 0.80054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.89 8.06 71.98 0.58 -3.31 16 2 C -0.05 -1.73 0.60 -52.18 -0.03 -1.76 16 3 C -0.12 -4.57 7.89 71.98 0.57 -4.00 16 4 C 0.00 -0.07 3.11 29.85 0.09 0.02 16 5 C -0.50 -28.02 8.20 25.60 0.21 -27.81 16 6 H 0.04 2.57 5.92 -2.91 -0.02 2.55 16 7 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 8 N -0.96 -60.17 13.96 21.45 0.30 -59.87 16 9 Si 0.94 44.09 27.47 68.60 1.88 45.97 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 12 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 13 C 0.08 2.24 4.65 86.30 0.40 2.64 16 14 N -0.68 -16.86 5.70 -517.94 -2.95 -19.81 16 15 C 0.14 2.92 5.94 85.56 0.51 3.43 16 16 C -0.04 -0.98 6.55 41.07 0.27 -0.71 16 17 C 0.09 2.47 7.67 83.74 0.64 3.11 16 18 Cl 0.00 -0.04 28.87 -2.72 -0.08 -0.12 16 19 N -0.53 -15.23 11.32 -185.28 -2.10 -17.32 16 20 C 0.23 5.25 7.81 134.09 1.05 6.30 16 21 C -0.11 -1.63 10.11 22.41 0.23 -1.40 16 22 C -0.07 -0.56 10.07 22.30 0.22 -0.34 16 23 C -0.13 -1.04 9.99 22.06 0.22 -0.82 16 24 C 0.05 0.67 10.85 83.22 0.90 1.57 16 25 N -0.35 -7.38 2.95 -338.74 -1.00 -8.38 16 26 H 0.06 1.98 7.60 -2.39 -0.02 1.96 16 27 H 0.02 1.10 6.62 -2.39 -0.02 1.08 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.03 1.54 6.62 -2.39 -0.02 1.52 16 31 H 0.06 1.84 6.57 -2.39 -0.02 1.82 16 32 H 0.01 0.62 7.20 -2.39 -0.02 0.60 16 33 H 0.02 0.73 7.57 -2.39 -0.02 0.71 16 34 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 35 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.34 9.09 6.76 -89.70 -0.61 8.48 16 38 H 0.06 1.28 7.90 -2.39 -0.02 1.26 16 39 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 41 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 42 H 0.19 0.12 8.06 -2.91 -0.02 0.09 16 43 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -72.96 361.99 2.74 -70.22 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.36 Total: 11.97 kcal Atomic # 6 Polarization: -28.98 SS G_CDS: 6.32 Total: -22.66 kcal Atomic # 7 Polarization: -99.64 SS G_CDS: -5.75 Total: -105.39 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -0.08 Total: -0.12 kcal Total: -72.96 2.74 -70.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000808429074.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.671 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds