Wall clock time and date at job start Tue Mar 31 2020 13:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21274 * 119.99995 * 2 1 4 4 N 1.34777 * 120.00215 * 180.02562 * 2 1 3 5 5 C 1.39251 * 120.00175 * 182.87065 * 4 2 1 6 6 C 1.38846 * 120.17392 * 60.79354 * 5 4 2 7 7 C 1.50705 * 119.95766 * 0.04007 * 6 5 4 8 8 C 1.38010 * 120.08106 * 180.02562 * 6 5 4 9 9 C 1.38584 * 120.41591 * 359.97438 * 8 6 5 10 10 C 1.37778 * 120.33644 * 0.27334 * 9 8 6 11 11 C 1.39745 * 119.91521 * 359.45655 * 10 9 8 12 12 C 1.47384 * 120.20379 * 180.26764 * 11 10 9 13 13 O 1.21518 * 119.99783 * 173.12001 * 12 11 10 14 14 O 1.34753 * 120.00216 * 353.12452 * 12 11 10 15 15 C 1.45201 * 117.00251 * 179.97438 * 14 12 11 16 16 C 1.53005 * 109.47099 * 179.97438 * 15 14 12 17 17 O 1.42900 * 109.46936 * 64.99790 * 16 15 14 18 18 C 1.42904 * 113.99461 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.46521 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00138 * 359.97438 * 19 18 17 21 21 C 1.37881 * 119.99801 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99789 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00041 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47364 * 89.99639 * 23 21 19 25 25 H 1.48508 * 109.46624 * 209.99754 * 23 21 19 26 26 H 1.48495 * 109.46964 * 329.99245 * 23 21 19 27 27 H 1.09003 * 109.46794 * 269.99769 * 1 2 3 28 28 H 1.08997 * 109.47171 * 29.99690 * 1 2 3 29 29 H 1.09003 * 109.47169 * 150.00108 * 1 2 3 30 30 H 0.97000 * 119.99793 * 2.86537 * 4 2 1 31 31 H 1.08993 * 109.47321 * 269.23579 * 7 6 5 32 32 H 1.09006 * 109.47196 * 29.24173 * 7 6 5 33 33 H 1.08999 * 109.46971 * 149.23351 * 7 6 5 34 34 H 1.07999 * 119.79531 * 179.97438 * 8 6 5 35 35 H 1.08000 * 119.83152 * 180.02562 * 9 8 6 36 36 H 1.07997 * 120.03626 * 179.72442 * 10 9 8 37 37 H 1.09002 * 109.46657 * 299.99584 * 15 14 12 38 38 H 1.08999 * 109.46874 * 59.99521 * 15 14 12 39 39 H 1.08999 * 109.46405 * 184.99975 * 16 15 14 40 40 H 1.09001 * 109.46609 * 304.99938 * 16 15 14 41 41 H 1.09000 * 109.47091 * 299.99783 * 18 17 16 42 42 H 1.08992 * 109.46900 * 60.00215 * 18 17 16 43 43 H 0.96995 * 120.00060 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5721 -1.1679 0.0599 6 6 4.2236 -0.6095 1.1515 7 6 3.4239 -0.0015 2.2749 8 6 5.6025 -0.6109 1.2091 9 6 6.3471 -1.1682 0.1817 10 6 5.7186 -1.7224 -0.9119 11 6 4.3229 -1.7337 -0.9820 12 6 3.6438 -2.3301 -2.1462 13 8 2.4347 -2.4514 -2.1479 14 8 4.3637 -2.7412 -3.2086 15 6 3.6286 -3.3195 -4.3192 16 6 4.6074 -3.7231 -5.4237 17 8 5.4578 -4.7684 -4.9480 18 6 6.4144 -5.2215 -5.9080 19 6 7.2523 -6.3182 -5.3029 20 1 7.0726 -6.6370 -4.2868 21 6 8.2492 -6.9140 -6.0462 22 7 8.4683 -6.5255 -7.2834 23 14 9.2874 -8.2739 -5.2964 24 1 8.6476 -9.5878 -5.5603 25 1 10.6431 -8.2528 -5.9023 26 1 9.3969 -8.0621 -3.8308 27 1 -0.3633 0.0000 1.0277 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8900 -0.5138 30 1 1.6969 -2.0067 -0.0429 31 1 3.2634 1.0578 2.0747 32 1 2.4612 -0.5070 2.3506 33 1 3.9689 -0.1157 3.2119 34 1 6.1045 -0.1749 2.0602 35 1 7.4257 -1.1644 0.2368 36 1 6.3037 -2.1514 -1.7118 37 1 3.0847 -4.1995 -3.9758 38 1 2.9233 -2.5858 -4.7094 39 1 4.0503 -4.0748 -6.2921 40 1 5.2130 -2.8616 -5.7050 41 1 5.8945 -5.6045 -6.7861 42 1 7.0576 -4.3913 -6.1997 43 1 9.1693 -6.9448 -7.8064 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815177421.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:27 Heat of formation + Delta-G solvation = -144.202237 kcal Electronic energy + Delta-G solvation = -26545.516000 eV Core-core repulsion = 22556.054056 eV Total energy + Delta-G solvation = -3989.461944 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.18233 -39.92285 -38.58342 -37.06143 -36.07974 -34.86762 -33.11361 -32.77051 -31.22334 -30.18670 -29.18695 -27.08260 -26.91681 -24.61570 -22.48234 -22.41316 -22.08904 -20.93564 -20.45786 -17.93372 -17.66969 -17.15850 -16.84638 -16.52739 -16.33673 -16.03263 -15.33127 -15.09212 -14.89103 -14.56906 -14.39624 -14.15871 -13.90367 -13.74599 -13.44663 -13.02004 -12.95116 -12.76061 -12.58781 -12.52730 -12.07168 -12.03447 -11.93305 -11.56834 -11.45603 -10.96790 -10.87043 -10.80358 -10.58972 -10.41974 -10.28289 -10.08224 -9.88085 -9.15429 -9.07372 -8.90225 -8.66001 -8.23869 -6.13936 -4.15765 0.48871 1.05327 2.34192 2.49054 2.69057 2.92066 3.28652 3.33733 3.39064 3.54345 4.30318 4.47146 4.52007 4.58581 4.68698 4.72499 4.92016 4.97690 5.04970 5.14237 5.17492 5.20317 5.22693 5.32182 5.41876 5.42601 5.53716 5.56871 5.82835 5.85683 5.90943 5.97044 6.03127 6.13494 6.20016 6.28634 6.50531 6.67064 7.03062 7.16743 7.37430 7.75415 7.77690 7.93209 8.10194 8.49617 8.96725 9.49079 10.97622 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018288 B = 0.002652 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.730393 B =10555.303976 C =11625.862514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.515 3.485 3 O -0.533 6.533 4 N -0.668 5.668 5 C 0.199 3.801 6 C -0.093 4.093 7 C -0.109 4.109 8 C -0.076 4.076 9 C -0.131 4.131 10 C -0.051 4.051 11 C -0.133 4.133 12 C 0.512 3.488 13 O -0.517 6.517 14 O -0.334 6.334 15 C 0.077 3.923 16 C 0.061 3.939 17 O -0.391 6.391 18 C 0.194 3.806 19 C -0.515 4.515 20 H 0.067 0.933 21 C 0.056 3.944 22 N -0.899 5.899 23 Si 0.908 3.092 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.271 1.271 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.085 0.915 30 H 0.418 0.582 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.050 0.950 41 H 0.006 0.994 42 H 0.008 0.992 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 13.264 17.492 25.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.304 3.696 3 O -0.409 6.409 4 N -0.318 5.318 5 C 0.104 3.896 6 C -0.095 4.095 7 C -0.165 4.165 8 C -0.094 4.094 9 C -0.149 4.149 10 C -0.070 4.070 11 C -0.136 4.136 12 C 0.358 3.642 13 O -0.408 6.408 14 O -0.249 6.249 15 C 0.003 3.997 16 C -0.016 4.016 17 O -0.311 6.311 18 C 0.120 3.880 19 C -0.553 4.553 20 H 0.085 0.915 21 C -0.145 4.145 22 N -0.538 5.538 23 Si 0.735 3.265 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.196 1.196 27 H 0.113 0.887 28 H 0.114 0.886 29 H 0.104 0.896 30 H 0.257 0.743 31 H 0.099 0.901 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.150 0.850 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.024 0.976 42 H 0.025 0.975 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.887 13.853 17.468 25.751 hybrid contribution 0.309 -1.158 -0.340 1.246 sum -12.578 12.696 17.128 24.754 Atomic orbital electron populations 1.21861 0.90843 1.05458 1.04819 1.20935 0.90814 0.82931 0.74909 1.90734 1.70728 1.31110 1.48333 1.43439 1.04178 1.10344 1.73853 1.17254 0.83269 0.97187 0.91858 1.19830 0.94231 1.00403 0.95031 1.20773 0.99054 1.01516 0.95206 1.21188 0.92563 0.96910 0.98763 1.21209 1.00779 0.99101 0.93829 1.21544 0.92447 0.94800 0.98180 1.19268 0.94201 1.07103 0.93043 1.20928 0.85428 0.75033 0.82808 1.90727 1.15089 1.53579 1.81398 1.86653 1.41067 1.71048 1.26170 1.23240 0.94093 0.97752 0.84616 1.22326 0.93153 0.92533 0.93629 1.87916 1.49116 1.51964 1.42072 1.20240 0.85906 0.94230 0.87603 1.21042 1.15831 1.18169 1.00284 0.91506 1.24952 0.97156 0.97531 0.94859 1.69958 1.32659 1.42485 1.08666 0.86328 0.79167 0.81543 0.79415 1.20462 1.21048 1.19578 0.88669 0.88644 0.89635 0.74283 0.90061 0.92094 0.91407 0.85003 0.84611 0.83346 0.90370 0.90405 0.91851 0.93140 0.97622 0.97467 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.30 36.01 0.37 -0.75 16 2 C 0.52 5.68 6.51 -10.98 -0.07 5.61 16 3 O -0.53 -7.79 15.07 5.56 0.08 -7.71 16 4 N -0.67 -7.34 3.24 -9.68 -0.03 -7.38 16 5 C 0.20 2.50 5.66 -83.48 -0.47 2.03 16 6 C -0.09 -1.02 5.53 -104.48 -0.58 -1.60 16 7 C -0.11 -0.97 8.47 36.01 0.31 -0.67 16 8 C -0.08 -0.72 9.68 -39.54 -0.38 -1.11 16 9 C -0.13 -1.33 10.02 -39.62 -0.40 -1.73 16 10 C -0.05 -0.64 9.61 -39.19 -0.38 -1.02 16 11 C -0.13 -1.85 5.89 -104.83 -0.62 -2.47 16 12 C 0.51 8.00 7.87 34.45 0.27 8.27 16 13 O -0.52 -8.11 14.28 -19.28 -0.28 -8.38 16 14 O -0.33 -5.66 9.47 -43.42 -0.41 -6.07 16 15 C 0.08 1.21 5.86 37.16 0.22 1.43 16 16 C 0.06 1.11 6.33 37.16 0.24 1.35 16 17 O -0.39 -9.36 10.30 -38.80 -0.40 -9.76 16 18 C 0.19 5.27 5.69 36.01 0.20 5.48 16 19 C -0.52 -15.07 9.43 -34.44 -0.32 -15.40 16 20 H 0.07 1.95 7.81 -52.49 -0.41 1.53 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 23 Si 0.91 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.42 3.98 7.80 -40.82 -0.32 3.66 16 31 H 0.08 0.83 7.20 -51.93 -0.37 0.45 16 32 H 0.06 0.51 6.96 -51.93 -0.36 0.15 16 33 H 0.07 0.46 8.09 -51.93 -0.42 0.04 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.15 1.91 7.63 -52.49 -0.40 1.51 16 37 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 42 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 371.98 15.07 5.61 5.61 Total: -1.00 -35.14 371.98 -7.49 -42.64 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.07 Total: -0.58 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -1.71 Total: 0.93 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.71 Total: -33.32 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: -1.00 Total: -31.92 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.14 -7.49 -42.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815177421.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.567 kcal (2) G-P(sol) polarization free energy of solvation -35.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds