Wall clock time and date at job start Tue Mar 31 2020 12:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00509 * 2 1 4 4 H 1.48496 * 109.47385 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46652 * 299.99921 * 3 2 1 6 6 H 1.48495 * 109.47091 * 59.99871 * 3 2 1 7 7 C 1.37883 * 119.99682 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99682 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47038 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47080 * 180.02562 * 10 9 7 12 12 O 1.45197 * 109.46851 * 180.02562 * 11 10 9 13 13 C 1.34234 * 116.99559 * 180.02562 * 12 11 10 14 14 O 1.20826 * 119.99918 * 359.97438 * 13 12 11 15 15 C 1.50696 * 119.99927 * 179.97438 * 13 12 11 16 16 N 1.46504 * 109.47310 * 179.97438 * 15 13 12 17 17 C 1.34695 * 123.06819 * 89.99803 * 16 15 13 18 18 O 1.21233 * 126.39055 * 11.92442 * 17 16 15 19 19 C 1.53783 * 107.22043 * 191.90320 * 17 16 15 20 20 H 1.09001 * 113.73509 * 212.29297 * 19 17 16 21 21 C 1.53088 * 104.78916 * 87.26099 * 19 17 16 22 22 C 1.48932 * 113.36762 * 214.76619 * 21 19 17 23 23 C 1.28900 * 124.81897 * 17.41290 * 22 21 19 24 24 C 1.49605 * 123.47731 * 357.81378 * 23 22 21 25 25 C 1.49325 * 113.58556 * 11.10960 * 24 23 22 26 26 H 1.09002 * 107.41656 * 205.20059 * 25 24 23 27 27 C 1.35183 * 123.06978 * 270.00358 * 16 15 13 28 28 O 1.21222 * 126.85861 * 9.73095 * 27 16 15 29 29 H 0.96999 * 119.99453 * 359.97438 * 1 2 3 30 30 H 1.08998 * 109.46960 * 59.99722 * 9 7 2 31 31 H 1.08995 * 109.47067 * 299.99705 * 9 7 2 32 32 H 1.08998 * 109.47288 * 60.00149 * 10 9 7 33 33 H 1.09009 * 109.47056 * 299.99866 * 10 9 7 34 34 H 1.08998 * 109.47105 * 59.99833 * 11 10 9 35 35 H 1.08995 * 109.46879 * 299.99842 * 11 10 9 36 36 H 1.09001 * 109.47241 * 59.99727 * 15 13 12 37 37 H 1.08998 * 109.47186 * 299.99945 * 15 13 12 38 38 H 1.09005 * 108.70168 * 335.77319 * 21 19 17 39 39 H 1.09004 * 108.69985 * 93.89069 * 21 19 17 40 40 H 1.08004 * 117.56066 * 197.45129 * 22 21 19 41 41 H 1.08004 * 118.16507 * 177.76108 * 23 22 21 42 42 H 1.09002 * 108.63914 * 250.09009 * 24 23 22 43 43 H 1.09005 * 108.64122 * 132.12684 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9872 -0.0001 12 8 2.4235 -6.0908 0.0005 13 6 1.9104 -7.3312 -0.0005 14 8 0.7125 -7.4894 -0.0014 15 6 2.8283 -8.5263 -0.0005 16 7 2.0304 -9.7550 -0.0011 17 6 1.6304 -10.3710 -1.1301 18 8 2.0219 -10.1386 -2.2537 19 6 0.5848 -11.4246 -0.7280 20 1 0.5893 -12.3114 -1.3618 21 6 -0.7478 -10.6712 -0.7244 22 6 -1.6886 -11.1399 0.3307 23 6 -1.3510 -11.8380 1.3604 24 6 0.0440 -12.3166 1.6118 25 6 1.0596 -11.6983 0.7084 26 1 1.8996 -12.3895 0.6404 27 6 1.6282 -10.3738 1.1315 28 8 1.7105 -9.9457 2.2626 29 1 -0.4849 0.8401 0.0004 30 1 0.6245 -2.5571 -0.8896 31 1 0.6239 -2.5567 0.8903 32 1 2.8717 -3.6045 0.8905 33 1 2.8718 -3.6044 -0.8895 34 1 0.8536 -5.0446 -0.8903 35 1 0.8531 -5.0451 0.8896 36 1 3.4566 -8.5019 0.8899 37 1 3.4577 -8.5010 -0.8901 38 1 -0.5493 -9.6106 -0.5697 39 1 -1.2240 -10.7988 -1.6966 40 1 -2.7304 -10.8757 0.2245 41 1 -2.1169 -12.0892 2.0793 42 1 0.0708 -13.3980 1.4776 43 1 0.3102 -12.0876 2.6437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815471974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:02 Heat of formation + Delta-G solvation = -137.719638 kcal Electronic energy + Delta-G solvation = -26863.670232 eV Core-core repulsion = 22874.489394 eV Total energy + Delta-G solvation = -3989.180838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -42.81475 -40.26167 -38.98471 -37.96436 -36.71906 -35.90759 -34.03626 -32.81502 -31.77887 -31.69475 -29.07235 -26.95470 -25.48031 -24.48914 -23.33588 -22.39710 -21.48570 -20.42911 -19.84634 -18.54992 -17.99167 -17.57843 -17.04550 -16.63938 -16.50483 -16.25311 -16.11588 -15.80055 -15.12321 -14.73745 -14.60223 -14.47154 -14.34655 -13.85862 -13.72852 -13.34295 -13.15559 -12.97276 -12.87182 -12.40292 -12.22885 -12.06875 -11.92323 -11.72682 -11.04705 -11.00535 -10.99419 -10.68472 -10.64814 -10.57189 -10.46661 -10.33731 -10.10489 -9.76400 -9.52159 -9.36638 -9.16641 -8.40510 -6.04954 -4.07987 1.13495 1.71825 1.94565 2.12446 2.20025 2.85574 3.29456 3.34220 3.36858 3.41249 3.67779 3.78840 4.15134 4.41707 4.53267 4.56734 4.60640 4.63046 4.72886 4.77977 4.82346 4.98899 5.00174 5.21749 5.31197 5.32811 5.38962 5.52616 5.54668 5.59545 5.69049 5.95686 6.21328 6.25259 6.38457 6.50391 6.55760 6.76715 6.85320 6.94715 7.30704 7.58358 7.68796 7.73226 7.93306 8.34077 8.98423 9.56458 11.06593 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024232 B = 0.002301 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.231616 B =12165.686844 C =12432.351041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.058 0.942 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.069 3.931 12 O -0.352 6.352 13 C 0.446 3.554 14 O -0.503 6.503 15 C 0.105 3.895 16 N -0.573 5.573 17 C 0.531 3.469 18 O -0.467 6.467 19 C -0.097 4.097 20 H 0.137 0.863 21 C -0.095 4.095 22 C -0.144 4.144 23 C -0.157 4.157 24 C -0.072 4.072 25 C -0.122 4.122 26 H 0.117 0.883 27 C 0.544 3.456 28 O -0.459 6.459 29 H 0.261 0.739 30 H 0.019 0.981 31 H 0.020 0.980 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.115 0.885 42 H 0.091 0.909 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 -30.545 0.642 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.268 6.268 13 C 0.287 3.713 14 O -0.391 6.391 15 C -0.018 4.018 16 N -0.319 5.319 17 C 0.320 3.680 18 O -0.336 6.336 19 C -0.119 4.119 20 H 0.155 0.845 21 C -0.132 4.132 22 C -0.162 4.162 23 C -0.175 4.175 24 C -0.109 4.109 25 C -0.143 4.143 26 H 0.135 0.865 27 C 0.333 3.667 28 O -0.327 6.327 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.110 0.890 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 1.326 -30.015 0.649 30.052 hybrid contribution 0.241 1.250 -0.011 1.273 sum 1.567 -28.765 0.639 28.815 Atomic orbital electron populations 1.69974 1.06107 1.26680 1.50593 1.25038 0.94886 0.99412 0.95179 0.86481 0.80089 0.83510 0.77613 1.19654 1.20959 1.20951 1.21203 0.93165 0.90619 1.50928 0.92342 1.19058 0.93833 0.90741 0.97701 1.21784 0.99977 0.90798 1.02084 1.23578 0.91162 0.83304 1.02282 1.86474 1.42753 1.14719 1.82843 1.23619 0.88772 0.85628 0.73330 1.90654 1.16647 1.86787 1.45003 1.21146 0.92374 0.79699 1.08586 1.47024 1.50701 1.24320 1.09840 1.21766 0.80470 0.82411 0.83374 1.90792 1.56383 1.65851 1.20571 1.22680 0.94686 0.98566 0.95940 0.84499 1.20237 0.91973 1.00842 1.00117 1.21496 0.99735 0.99199 0.95780 1.21727 0.97115 1.00412 0.98214 1.19342 0.91336 1.00395 0.99873 1.21034 1.01489 0.95790 0.96003 0.86494 1.20670 0.75883 0.86555 0.83632 1.90793 1.51471 1.70581 1.19879 0.92926 0.96229 0.96212 0.92021 0.92033 0.91381 0.91358 0.84745 0.84477 0.88889 0.89223 0.87006 0.86746 0.89040 0.89057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.76 9.11 -34.44 -0.31 -15.07 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.28 5.53 -26.73 -0.15 -2.42 16 11 C 0.07 1.30 5.47 37.16 0.20 1.51 16 12 O -0.35 -5.87 10.22 -39.27 -0.40 -6.27 16 13 C 0.45 6.81 8.03 36.00 0.29 7.09 16 14 O -0.50 -8.95 15.40 -18.75 -0.29 -9.24 16 15 C 0.10 1.12 6.27 -5.19 -0.03 1.09 16 16 N -0.57 -6.06 2.03 -115.47 -0.23 -6.30 16 17 C 0.53 5.42 6.72 -9.46 -0.06 5.36 16 18 O -0.47 -6.03 17.58 5.60 0.10 -5.93 16 19 C -0.10 -0.68 4.07 -89.78 -0.37 -1.04 16 20 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 21 C -0.09 -0.81 5.18 -28.68 -0.15 -0.96 16 22 C -0.14 -1.13 9.75 -36.31 -0.35 -1.48 16 23 C -0.16 -1.08 9.88 -35.99 -0.36 -1.43 16 24 C -0.07 -0.41 5.67 -30.22 -0.17 -0.58 16 25 C -0.12 -0.79 2.39 -93.43 -0.22 -1.01 16 26 H 0.12 0.42 8.11 -51.93 -0.42 0.00 16 27 C 0.54 5.64 7.43 -11.04 -0.08 5.56 16 28 O -0.46 -6.18 17.39 5.61 0.10 -6.08 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.06 1.25 8.14 -51.92 -0.42 0.83 16 34 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.07 1.30 8.13 -51.93 -0.42 0.88 16 36 H 0.13 1.16 8.02 -51.93 -0.42 0.74 16 37 H 0.14 1.20 7.83 -51.93 -0.41 0.80 16 38 H 0.09 1.11 6.64 -51.93 -0.34 0.77 16 39 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.11 0.80 8.06 -52.48 -0.42 0.37 16 41 H 0.11 0.66 8.06 -52.48 -0.42 0.23 16 42 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.58 7.79 -51.93 -0.40 0.18 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -35.21 366.50 -7.68 -42.89 By element: Atomic # 1 Polarization: 2.59 SS G_CDS: -6.18 Total: -3.59 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -2.00 Total: -1.39 kcal Atomic # 7 Polarization: -33.05 SS G_CDS: 0.50 Total: -32.54 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.49 Total: -27.53 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.21 -7.68 -42.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815471974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.833 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds