Wall clock time and date at job start Tue Mar 31 2020 13:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46795 * 2 1 4 4 C 1.53001 * 109.46934 * 119.99927 * 2 1 3 5 5 N 1.46902 * 109.47119 * 180.38471 * 4 2 1 6 6 C 1.46903 * 110.99522 * 286.73494 * 5 4 2 7 7 C 1.50707 * 109.46781 * 75.53525 * 6 5 4 8 8 H 1.07993 * 120.00141 * 5.17454 * 7 6 5 9 9 C 1.37873 * 119.99854 * 185.18087 * 7 6 5 10 10 N 1.31521 * 120.00017 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00177 * 359.97438 * 9 7 6 12 12 H 1.48506 * 109.46808 * 90.00329 * 11 9 7 13 13 H 1.48494 * 109.47337 * 209.99955 * 11 9 7 14 14 H 1.48495 * 109.47074 * 330.00742 * 11 9 7 15 15 C 1.46900 * 111.00132 * 162.78865 * 5 4 2 16 16 C 1.50702 * 109.46952 * 288.59304 * 15 5 4 17 17 C 1.33056 * 125.04114 * 94.91553 * 16 15 5 18 18 C 1.39351 * 114.91563 * 179.79551 * 17 16 15 19 19 C 1.48433 * 122.76216 * 180.23304 * 18 17 16 20 20 N 1.33681 * 126.31272 * 359.97438 * 19 18 17 21 21 N 1.28566 * 109.85437 * 179.84898 * 20 19 18 22 22 N 1.28918 * 109.72215 * 0.42162 * 21 20 19 23 23 H 0.96996 * 126.43635 * 179.76784 * 22 21 20 24 24 N 1.31998 * 126.30545 * 180.31059 * 19 18 17 25 25 C 1.34529 * 114.47072 * 0.49927 * 18 17 16 26 26 S 1.75815 * 125.03719 * 275.22489 * 16 15 5 27 27 H 1.08997 * 109.47255 * 300.00140 * 1 2 3 28 28 H 1.08998 * 109.46782 * 60.00550 * 1 2 3 29 29 H 1.09008 * 109.47056 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47255 * 239.99860 * 2 1 3 31 31 H 1.08997 * 109.47612 * 304.90061 * 3 2 1 32 32 H 1.08998 * 109.47572 * 64.90703 * 3 2 1 33 33 H 1.09010 * 109.46773 * 184.90610 * 3 2 1 34 34 H 1.08998 * 109.47465 * 60.37919 * 4 2 1 35 35 H 1.09010 * 109.47041 * 300.38058 * 4 2 1 36 36 H 1.08997 * 109.46911 * 195.52663 * 6 5 4 37 37 H 1.08996 * 109.47494 * 315.53691 * 6 5 4 38 38 H 0.97002 * 119.99885 * 179.97438 * 10 9 7 39 39 H 1.09003 * 109.47310 * 48.59101 * 15 5 4 40 40 H 1.08998 * 109.47313 * 168.59201 * 15 5 4 41 41 H 1.08003 * 122.54684 * 359.97438 * 17 16 15 42 42 H 1.07998 * 125.22810 * 179.76047 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5090 -0.7132 1.2540 6 6 4.0436 -1.6481 0.2549 7 6 3.8934 -1.0525 -1.1213 8 1 3.5232 -0.0445 -1.2360 9 6 4.2284 -1.7946 -2.2340 10 7 4.0968 -1.2751 -3.4350 11 14 4.8692 -3.5380 -2.0356 12 1 3.7289 -4.4893 -2.0513 13 1 5.7941 -3.8556 -3.1531 14 1 5.5938 -3.6552 -0.7448 15 6 4.0328 -1.0169 2.5924 16 6 3.7806 0.1533 3.5079 17 6 2.7346 0.2754 4.3211 18 6 2.7137 1.4444 5.0793 19 6 1.6310 1.7559 6.0457 20 7 0.5668 0.9930 6.3152 21 7 -0.1663 1.5644 7.2034 22 7 0.3582 2.6928 7.5402 23 1 0.0044 3.3221 8.1881 24 7 1.5384 2.8400 6.7929 25 6 3.7528 2.2700 4.8591 26 16 4.8209 1.5630 3.6542 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6067 1.9811 -0.8428 32 1 1.7502 1.9304 0.9306 33 1 3.1265 1.4437 -0.0879 34 1 1.6822 -1.7508 1.2459 35 1 1.6710 -0.2113 2.1393 36 1 5.0986 -1.8324 0.4577 37 1 3.4941 -2.5880 0.3059 38 1 4.3329 -1.7971 -4.2178 39 1 3.5320 -1.9012 2.9866 40 1 5.1047 -1.2043 2.5291 41 1 1.9618 -0.4759 4.3906 42 1 3.9075 3.2208 5.3475 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824255324.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:18 Heat of formation + Delta-G solvation = 161.559575 kcal Electronic energy + Delta-G solvation = -24692.852608 eV Core-core repulsion = 21223.987864 eV Total energy + Delta-G solvation = -3468.864744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.132 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.38386 -38.58484 -37.24690 -34.06725 -33.47125 -33.06679 -32.48165 -30.30748 -27.67614 -26.43306 -26.30123 -25.50679 -23.99564 -23.51010 -21.36291 -20.58577 -19.60124 -19.17261 -18.60791 -17.08002 -16.72828 -16.44701 -15.80430 -15.18256 -14.61191 -14.29437 -14.28845 -13.82731 -13.40181 -13.15329 -12.94989 -12.81701 -12.60306 -12.46964 -12.24952 -12.08316 -11.64952 -11.53330 -11.32777 -11.13392 -11.12333 -11.04001 -11.02177 -10.76980 -10.59819 -10.34990 -10.09905 -9.91956 -9.90054 -9.59072 -8.96886 -8.63479 -8.48295 -8.33124 -7.40854 -6.03346 -3.98324 0.48326 0.97649 1.57027 1.83236 1.89529 2.05018 3.02254 3.28032 3.36579 3.37757 3.63310 4.11850 4.42761 4.74644 4.93747 5.06290 5.22767 5.27189 5.36012 5.50846 5.60088 5.72037 5.82840 5.91876 6.06871 6.12294 6.17710 6.23113 6.24756 6.31145 6.40141 6.42092 6.59136 6.66314 6.74638 6.77255 6.90534 7.03001 7.34256 7.54190 7.67446 7.89473 7.91771 8.03789 8.66861 9.09730 9.58064 11.08086 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.018747 B = 0.003431 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.196493 B = 8157.966197 C = 8704.161770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.110 4.110 3 C -0.123 4.123 4 C 0.074 3.926 5 N -0.519 5.519 6 C 0.161 3.839 7 C -0.510 4.510 8 H 0.102 0.898 9 C 0.069 3.931 10 N -0.898 5.898 11 Si 0.869 3.131 12 H -0.279 1.279 13 H -0.288 1.288 14 H -0.269 1.269 15 C 0.115 3.885 16 C -0.144 4.144 17 C -0.119 4.119 18 C -0.035 4.035 19 C 0.278 3.722 20 N -0.292 5.292 21 N 0.008 4.992 22 N -0.302 5.302 23 H 0.468 0.532 24 N -0.296 5.296 25 C -0.189 4.189 26 S 0.179 5.821 27 H 0.039 0.961 28 H 0.048 0.952 29 H 0.044 0.956 30 H 0.123 0.877 31 H 0.034 0.966 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.022 0.978 35 H 0.057 0.943 36 H 0.024 0.976 37 H -0.012 1.012 38 H 0.263 0.737 39 H 0.048 0.952 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.672 7.035 19.896 21.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.128 4.128 3 C -0.180 4.180 4 C -0.054 4.054 5 N -0.243 5.243 6 C 0.035 3.965 7 C -0.548 4.548 8 H 0.120 0.880 9 C -0.133 4.133 10 N -0.537 5.537 11 Si 0.696 3.304 12 H -0.205 1.205 13 H -0.214 1.214 14 H -0.194 1.194 15 C -0.015 4.015 16 C -0.262 4.262 17 C -0.149 4.149 18 C -0.053 4.053 19 C -0.006 4.006 20 N -0.170 5.170 21 N 0.012 4.988 22 N -0.149 5.149 23 H 0.323 0.677 24 N -0.140 5.140 25 C -0.330 4.330 26 S 0.445 5.555 27 H 0.058 0.942 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.141 0.859 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.040 0.960 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.006 0.994 38 H 0.073 0.927 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.165 0.835 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -2.604 7.844 19.184 20.889 hybrid contribution -1.226 -1.606 1.164 2.332 sum -3.830 6.238 20.348 21.625 Atomic orbital electron populations 1.21827 0.97370 1.00480 1.00365 1.21561 0.92737 0.97356 1.01168 1.21585 1.02764 0.95252 0.98440 1.22049 0.87368 0.97804 0.98169 1.61981 1.07365 1.52989 1.01995 1.20290 0.94423 0.89675 0.92084 1.21319 1.42926 1.03178 0.87356 0.88014 1.24898 0.95464 0.97577 0.95319 1.69883 1.48889 1.37242 0.97667 0.86967 0.79307 0.86152 0.77935 1.20477 1.21352 1.19375 1.20608 1.00909 0.90809 0.89194 1.24424 0.98766 1.00867 1.02140 1.19820 0.99509 0.98071 0.97513 1.16142 0.93112 0.97104 0.98910 1.23281 0.94068 0.88033 0.95192 1.75525 1.03857 1.26262 1.11327 1.78353 1.19011 0.94539 1.06937 1.51000 1.15715 1.16010 1.32173 0.67732 1.78869 1.02396 1.22083 1.10615 1.25886 0.99198 1.04179 1.03710 1.84453 1.24206 1.12268 1.34608 0.94206 0.93245 0.93654 0.85895 0.94699 0.95197 0.90846 0.95989 0.92506 0.95767 0.99411 0.92725 0.93412 0.89882 0.83507 0.81281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.19 37.16 0.34 -2.05 16 2 C -0.11 -2.14 2.39 -90.62 -0.22 -2.36 16 3 C -0.12 -2.34 8.37 37.16 0.31 -2.03 16 4 C 0.07 1.36 4.27 -3.82 -0.02 1.35 16 5 N -0.52 -9.94 3.73 -237.51 -0.89 -10.83 16 6 C 0.16 3.62 3.83 -4.97 -0.02 3.61 16 7 C -0.51 -13.34 7.45 -34.44 -0.26 -13.59 16 8 H 0.10 2.82 4.62 -52.49 -0.24 2.58 16 9 C 0.07 1.89 5.47 -17.82 -0.10 1.80 16 10 N -0.90 -26.33 13.96 55.43 0.77 -25.56 16 11 Si 0.87 20.75 27.37 -169.99 -4.65 16.10 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.17 6.69 56.52 0.38 -5.79 16 15 C 0.11 1.81 5.46 -4.97 -0.03 1.78 16 16 C -0.14 -2.03 5.49 -36.11 -0.20 -2.23 16 17 C -0.12 -1.62 8.46 -40.97 -0.35 -1.97 16 18 C -0.04 -0.46 5.79 -106.59 -0.62 -1.07 16 19 C 0.28 3.62 8.01 -156.45 -1.25 2.36 16 20 N -0.29 -3.94 12.24 32.12 0.39 -3.55 16 21 N 0.01 0.09 13.42 60.35 0.81 0.90 16 22 N -0.30 -2.59 8.44 60.35 0.51 -2.08 16 23 H 0.47 1.71 8.96 -331.93 -2.98 -1.27 16 24 N -0.30 -3.36 12.79 32.14 0.41 -2.95 16 25 C -0.19 -2.20 10.95 29.42 0.32 -1.88 16 26 S 0.18 2.23 23.31 -107.50 -2.51 -0.27 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 30 H 0.12 2.89 4.94 -51.93 -0.26 2.63 16 31 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 1.55 6.59 -51.92 -0.34 1.21 16 34 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 35 H 0.06 0.97 6.02 -51.92 -0.31 0.66 16 36 H 0.02 0.55 7.08 -51.93 -0.37 0.18 16 37 H -0.01 -0.27 6.91 -51.93 -0.36 -0.63 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.05 0.71 8.05 -51.93 -0.42 0.29 16 40 H 0.08 1.26 7.70 -51.93 -0.40 0.86 16 41 H 0.15 1.99 7.98 -52.48 -0.42 1.57 16 42 H 0.17 1.63 8.06 -52.49 -0.42 1.21 16 LS Contribution 355.02 15.07 5.35 5.35 Total: -1.00 -30.18 355.02 -10.06 -40.24 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -8.19 Total: -1.06 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -2.07 Total: -16.30 kcal Atomic # 7 Polarization: -46.07 SS G_CDS: 2.01 Total: -44.06 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.65 Total: 16.10 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.51 Total: -0.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.18 -10.06 -40.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824255324.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.802 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds