Wall clock time and date at job start Tue Mar 31 2020 13:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47243 * 2 1 4 4 C 1.52995 * 109.47121 * 120.00271 * 2 1 3 5 5 H 1.08998 * 109.47563 * 60.00063 * 4 2 1 6 6 N 1.46498 * 109.47045 * 300.00025 * 4 2 1 7 7 C 1.34777 * 120.00078 * 84.99868 * 6 4 2 8 8 O 1.21503 * 119.99980 * 0.02562 * 7 6 4 9 9 O 1.34643 * 119.99701 * 180.02562 * 7 6 4 10 10 C 1.50702 * 109.47363 * 180.02562 * 4 2 1 11 11 O 1.20824 * 120.00474 * 119.99658 * 10 4 2 12 12 O 1.34230 * 119.99778 * 299.99751 * 10 4 2 13 13 C 1.45193 * 117.00257 * 179.97438 * 12 10 4 14 14 C 1.50700 * 109.47376 * 180.02562 * 13 12 10 15 15 C 1.38637 * 119.75030 * 269.72858 * 14 13 12 16 16 C 1.37616 * 120.24868 * 179.72202 * 15 14 13 17 17 C 1.40718 * 119.74275 * 0.57055 * 16 15 14 18 18 C 1.41399 * 120.24187 * 179.68287 * 17 16 15 19 19 H 1.08001 * 120.00010 * 204.40483 * 18 17 16 20 20 C 1.39944 * 119.99940 * 24.40107 * 18 17 16 21 21 N 1.30824 * 120.00089 * 17.86172 * 20 18 17 22 22 Si 1.86800 * 119.99572 * 197.85596 * 20 18 17 23 23 H 1.48494 * 109.47521 * 359.97438 * 22 20 18 24 24 H 1.48506 * 109.46817 * 120.00490 * 22 20 18 25 25 H 1.48501 * 109.47163 * 239.99953 * 22 20 18 26 26 C 1.40715 * 119.51208 * 359.70878 * 17 16 15 27 27 C 1.37620 * 119.74370 * 359.97438 * 26 17 16 28 28 H 1.08996 * 109.47422 * 300.00153 * 1 2 3 29 29 H 1.09007 * 109.46833 * 60.00178 * 1 2 3 30 30 H 1.08999 * 109.46954 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47106 * 240.00237 * 2 1 3 32 32 H 1.08994 * 109.47187 * 180.02562 * 3 2 1 33 33 H 1.08996 * 109.47013 * 300.00423 * 3 2 1 34 34 H 1.08998 * 109.46694 * 60.00026 * 3 2 1 35 35 H 0.97007 * 120.00037 * 264.99856 * 6 4 2 36 36 H 0.96706 * 116.99696 * 180.02562 * 9 7 6 37 37 H 1.09000 * 109.47434 * 300.00154 * 13 12 10 38 38 H 1.09001 * 109.47178 * 60.00274 * 13 12 10 39 39 H 1.08003 * 119.87085 * 359.97438 * 15 14 13 40 40 H 1.08004 * 120.13054 * 180.27841 * 16 15 14 41 41 H 0.96998 * 119.99739 * 180.02562 * 21 20 18 42 42 H 1.08000 * 120.12792 * 179.97438 * 26 17 16 43 43 H 1.08001 * 119.87285 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6767 -1.7489 1.2492 6 7 1.5516 -0.0307 2.4453 7 6 0.3296 -0.3166 2.9368 8 8 -0.3668 -1.1473 2.3880 9 8 -0.1193 0.3185 4.0359 10 6 3.5470 -0.7208 1.2495 11 8 4.1508 -0.1975 2.1559 12 8 4.2185 -1.3016 0.2429 13 6 5.6685 -1.2627 0.3086 14 6 6.2449 -1.9581 -0.8976 15 6 6.5141 -3.3171 -0.8450 16 6 7.0352 -3.9636 -1.9423 17 6 7.3061 -3.2376 -3.1169 18 6 7.8479 -3.8900 -4.2484 19 1 8.4113 -3.3272 -4.9780 20 6 7.6541 -5.2649 -4.4229 21 7 6.7078 -5.8812 -3.7623 22 14 8.7465 -6.2201 -5.5991 23 1 9.7321 -5.2983 -6.2186 24 1 9.4645 -7.2850 -4.8535 25 1 7.9109 -6.8367 -6.6606 26 6 7.0344 -1.8575 -3.1570 27 6 6.5071 -1.2331 -2.0497 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.1078 0.6323 2.8837 36 1 -1.0018 0.0797 4.3512 37 1 6.0038 -0.2257 0.3245 38 1 6.0048 -1.7671 1.2145 39 1 6.3102 -3.8712 0.0594 40 1 7.2400 -5.0233 -1.9007 41 1 6.5738 -6.8342 -3.8830 42 1 7.2388 -1.2905 -4.0531 43 1 6.2974 -0.1740 -2.0783 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833509319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:55 Heat of formation + Delta-G solvation = -181.222323 kcal Electronic energy + Delta-G solvation = -26704.049432 eV Core-core repulsion = 22712.982176 eV Total energy + Delta-G solvation = -3991.067256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.20295 -41.12434 -39.52755 -38.31394 -37.46223 -36.63088 -35.69033 -34.22098 -32.62250 -31.22291 -29.73217 -28.46298 -28.11408 -25.59139 -23.48018 -22.95614 -22.77247 -21.83790 -20.84840 -20.39301 -19.26479 -18.59006 -18.16344 -17.99588 -17.62987 -17.27479 -16.95641 -16.24208 -15.81464 -15.64687 -15.52793 -15.33621 -14.62972 -14.52385 -14.38889 -14.09116 -13.85647 -13.79960 -13.53382 -13.33254 -13.11926 -12.84858 -12.72767 -12.67191 -12.59712 -12.36697 -12.20982 -12.09111 -11.86131 -11.76922 -11.68458 -11.58705 -11.42564 -11.28332 -11.04392 -10.44914 -9.42922 -9.32277 -8.68751 -6.39319 0.63732 0.97671 1.08384 1.13797 1.39176 1.46633 1.54411 1.69505 1.98598 2.19630 2.70247 3.36864 3.55035 3.67184 3.79792 3.82077 4.07096 4.10019 4.13059 4.35757 4.47653 4.49841 4.55667 4.57012 4.74712 4.83874 4.92621 4.97823 5.02169 5.12497 5.15608 5.29187 5.31494 5.36158 5.39154 5.41579 5.65982 5.78423 5.89101 6.06627 6.15112 6.24359 6.32987 6.56653 6.65418 6.89194 6.97954 7.36367 8.27790 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023200 B = 0.002460 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.627867 B =11379.300884 C =11573.590099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.102 4.102 3 C -0.147 4.147 4 C 0.181 3.819 5 H 0.126 0.874 6 N -0.688 5.688 7 C 0.674 3.326 8 O -0.596 6.596 9 O -0.517 6.517 10 C 0.464 3.536 11 O -0.525 6.525 12 O -0.350 6.350 13 C 0.141 3.859 14 C -0.230 4.230 15 C -0.080 4.080 16 C -0.195 4.195 17 C 0.088 3.912 18 C -0.492 4.492 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.817 5.817 22 Si 0.983 3.017 23 H -0.257 1.257 24 H -0.264 1.264 25 H -0.265 1.265 26 C -0.245 4.245 27 C -0.062 4.062 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.420 0.580 36 H 0.449 0.551 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.290 0.710 42 H 0.102 0.898 43 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.906 10.449 9.839 18.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.122 4.122 3 C -0.204 4.204 4 C 0.075 3.925 5 H 0.144 0.856 6 N -0.351 5.351 7 C 0.426 3.574 8 O -0.488 6.488 9 O -0.329 6.329 10 C 0.307 3.693 11 O -0.415 6.415 12 O -0.266 6.266 13 C 0.069 3.931 14 C -0.231 4.231 15 C -0.099 4.099 16 C -0.214 4.214 17 C 0.085 3.915 18 C -0.520 4.520 19 H 0.098 0.902 20 C -0.181 4.181 21 N -0.443 5.443 22 Si 0.804 3.196 23 H -0.180 1.180 24 H -0.189 1.189 25 H -0.190 1.190 26 C -0.265 4.265 27 C -0.080 4.080 28 H 0.068 0.932 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.258 0.742 36 H 0.313 0.687 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.790 10.099 9.785 17.724 hybrid contribution 0.315 -0.595 -0.011 0.673 sum -10.474 9.504 9.774 17.192 Atomic orbital electron populations 1.21770 0.92593 1.02366 1.01817 1.21576 0.97893 0.97318 0.95372 1.21855 1.00204 0.94973 1.03396 1.20386 0.85668 1.00239 0.86187 0.85602 1.44096 1.16105 1.45159 1.29746 1.17478 0.81916 0.78881 0.79078 1.91084 1.57718 1.37402 1.62551 1.84167 1.42381 1.64782 1.41599 1.23644 0.91560 0.74524 0.79543 1.90633 1.70741 1.43484 1.36681 1.86675 1.23900 1.70321 1.45713 1.21664 0.74252 1.00568 0.96588 1.18961 1.13416 0.94128 0.96635 1.20787 0.97910 0.93858 0.97320 1.21265 1.07411 0.99654 0.93112 1.18050 0.88390 0.92266 0.92780 1.19955 1.30878 0.94132 1.07076 0.90237 1.26814 0.94918 0.98651 0.97747 1.69879 1.25345 1.12188 1.36839 0.85140 0.78617 0.78036 0.77837 1.18028 1.18885 1.19021 1.21181 1.11025 0.95368 0.98895 1.20710 0.96577 0.98618 0.92063 0.93160 0.91310 0.92588 0.88631 0.93828 0.90456 0.91712 0.74212 0.68739 0.90210 0.91129 0.87648 0.87926 0.89908 0.87940 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.52 7.72 71.98 0.56 -1.96 16 2 C -0.10 -2.11 2.74 -10.80 -0.03 -2.14 16 3 C -0.15 -2.72 8.79 71.98 0.63 -2.09 16 4 C 0.18 4.16 2.52 44.24 0.11 4.27 16 5 H 0.13 3.04 7.58 -2.39 -0.02 3.02 16 6 N -0.69 -13.78 4.08 -573.74 -2.34 -16.12 16 7 C 0.67 13.39 7.48 129.79 0.97 14.36 16 8 O -0.60 -15.02 14.25 19.83 0.28 -14.74 16 9 O -0.52 -6.84 13.48 -55.52 -0.75 -7.58 16 10 C 0.46 12.93 6.06 71.24 0.43 13.36 16 11 O -0.53 -15.87 15.58 21.97 0.34 -15.53 16 12 O -0.35 -11.38 10.11 -51.41 -0.52 -11.90 16 13 C 0.14 4.77 5.58 71.24 0.40 5.17 16 14 C -0.23 -9.48 5.54 -19.68 -0.11 -9.59 16 15 C -0.08 -3.64 9.67 22.22 0.21 -3.43 16 16 C -0.19 -10.08 8.70 22.73 0.20 -9.88 16 17 C 0.09 4.63 5.58 -21.29 -0.12 4.51 16 18 C -0.49 -25.86 9.05 23.46 0.21 -25.64 16 19 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 20 C 0.03 1.71 5.14 85.26 0.44 2.14 16 21 N -0.82 -41.87 10.95 21.83 0.24 -41.63 16 22 Si 0.98 37.09 29.59 68.60 2.03 39.12 16 23 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 24 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 25 H -0.27 -9.60 7.11 99.48 0.71 -8.89 16 26 C -0.25 -11.64 9.80 22.73 0.22 -11.41 16 27 C -0.06 -2.57 9.67 22.22 0.21 -2.36 16 28 H 0.05 1.00 5.78 -2.39 -0.01 0.98 16 29 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.25 7.53 -2.39 -0.02 1.24 16 31 H 0.10 2.14 8.11 -2.38 -0.02 2.12 16 32 H 0.04 0.91 7.22 -2.39 -0.02 0.90 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 1.08 7.60 -2.39 -0.02 1.07 16 35 H 0.42 7.86 7.90 -92.70 -0.73 7.13 16 36 H 0.45 1.76 9.11 -74.05 -0.67 1.09 16 37 H 0.08 2.44 8.07 -2.39 -0.02 2.42 16 38 H 0.07 2.29 8.07 -2.39 -0.02 2.27 16 39 H 0.11 4.31 8.06 -2.91 -0.02 4.28 16 40 H 0.10 5.56 6.16 -2.91 -0.02 5.54 16 41 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 42 H 0.10 4.56 8.06 -2.91 -0.02 4.54 16 43 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -63.16 363.18 3.28 -59.88 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.35 Total: 33.19 kcal Atomic # 6 Polarization: -29.03 SS G_CDS: 4.34 Total: -24.69 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: -2.10 Total: -57.75 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.64 Total: -49.76 kcal Atomic # 14 Polarization: 37.09 SS G_CDS: 2.03 Total: 39.12 kcal Total: -63.16 3.28 -59.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833509319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.346 kcal (2) G-P(sol) polarization free energy of solvation -63.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds