Wall clock time and date at job start Tue Mar 31 2020 13:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34660 * 117.00183 * 2 1 4 4 O 1.21403 * 119.99811 * 359.97438 * 3 2 1 5 5 C 1.48262 * 119.99895 * 180.27042 * 3 2 1 6 6 C 1.39335 * 119.56750 * 179.72070 * 5 3 2 7 7 C 1.38454 * 119.18823 * 180.02562 * 6 5 3 8 8 C 1.39905 * 118.35369 * 359.97438 * 7 6 5 9 9 C 1.47911 * 120.46044 * 179.97438 * 8 7 6 10 10 O 1.21442 * 120.00428 * 0.02562 * 9 8 7 11 11 O 1.34692 * 119.99930 * 180.02562 * 9 8 7 12 12 C 1.45194 * 117.00241 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.47574 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46924 * 300.00157 * 13 12 11 15 15 C 1.53005 * 109.46785 * 59.99377 * 13 12 11 16 16 C 1.52990 * 109.47356 * 179.97438 * 13 12 11 17 17 C 1.50696 * 109.47327 * 179.97438 * 16 13 12 18 18 H 1.08005 * 120.00026 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00629 * 180.02562 * 17 16 13 20 20 N 1.31509 * 120.00190 * 179.97438 * 19 17 16 21 21 Si 1.86802 * 119.99505 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47448 * 90.00265 * 21 19 17 23 23 H 1.48506 * 109.46858 * 210.00179 * 21 19 17 24 24 H 1.48500 * 109.46959 * 329.99751 * 21 19 17 25 25 C 1.39784 * 119.07442 * 0.02562 * 8 7 6 26 26 N 1.31392 * 120.71572 * 359.72273 * 25 8 7 27 27 H 1.09004 * 109.46605 * 60.00825 * 1 2 3 28 28 H 1.09001 * 109.47216 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47461 * 300.00626 * 1 2 3 30 30 H 1.07993 * 120.40233 * 359.97438 * 6 5 3 31 31 H 1.08004 * 120.82119 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.46879 * 299.99788 * 12 11 9 33 33 H 1.08996 * 109.47391 * 59.99823 * 12 11 9 34 34 H 1.08993 * 109.47359 * 59.99371 * 14 13 12 35 35 H 1.08995 * 109.47234 * 179.97438 * 14 13 12 36 36 H 1.09011 * 109.46614 * 299.99634 * 14 13 12 37 37 H 1.09002 * 109.47004 * 60.00530 * 15 13 12 38 38 H 1.09005 * 109.46669 * 180.02562 * 15 13 12 39 39 H 1.08993 * 109.47296 * 300.00505 * 15 13 12 40 40 H 1.09002 * 109.47327 * 300.00017 * 16 13 12 41 41 H 1.08996 * 109.47161 * 60.00185 * 16 13 12 42 42 H 0.97005 * 119.99840 * 179.97438 * 20 19 17 43 43 H 1.07996 * 119.64001 * 179.97438 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1998 0.0000 4 8 1.4021 2.2180 -0.0005 5 6 3.5439 1.2773 -0.0061 6 6 4.1671 2.5235 -0.0119 7 6 5.5502 2.5868 -0.0181 8 6 6.2702 1.3872 -0.0176 9 6 7.7492 1.4004 -0.0247 10 8 8.3471 2.4574 -0.0304 11 8 8.4331 0.2400 -0.0247 12 6 9.8823 0.3288 -0.0312 13 6 10.4797 -1.0798 -0.0296 14 6 10.0202 -1.8271 1.2239 15 6 10.0093 -1.8346 -1.2745 16 6 12.0068 -0.9861 -0.0371 17 6 12.5952 -2.3734 -0.0348 18 1 11.9450 -3.2358 -0.0283 19 6 13.9636 -2.5420 -0.0401 20 7 14.4770 -3.7527 -0.0377 21 14 15.0882 -1.0505 -0.0493 22 1 15.3923 -0.6510 1.3483 23 1 16.3514 -1.3874 -0.7538 24 1 14.4152 0.0726 -0.7499 25 6 5.5723 0.1761 -0.0116 26 7 4.2585 0.1586 -0.0009 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 3.5785 3.4289 -0.0125 31 1 6.0606 3.5386 -0.0223 32 1 10.2096 0.8617 -0.9240 33 1 10.2174 0.8662 0.8559 34 1 8.9323 -1.8938 1.2288 35 1 10.4454 -2.8307 1.2249 36 1 10.3553 -1.2893 2.1109 37 1 10.3367 -1.3022 -2.1676 38 1 10.4346 -2.8383 -1.2731 39 1 8.9215 -1.9013 -1.2696 40 1 12.3338 -0.4538 -0.9303 41 1 12.3421 -0.4482 0.8496 42 1 15.4398 -3.8712 -0.0418 43 1 6.1189 -0.7553 -0.0116 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000842350841.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:34 Heat of formation + Delta-G solvation = -158.449210 kcal Electronic energy + Delta-G solvation = -26098.884722 eV Core-core repulsion = 22108.804983 eV Total energy + Delta-G solvation = -3990.079740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25129 -41.55006 -40.54704 -38.76728 -37.69371 -36.97285 -34.40536 -34.05534 -33.13060 -29.96896 -29.16372 -28.06747 -27.94319 -26.58357 -24.91378 -24.56062 -23.13627 -22.00461 -19.92548 -19.67477 -18.98234 -18.86253 -18.56287 -17.83019 -17.63331 -17.49359 -17.00748 -16.22058 -16.02792 -15.61687 -15.54327 -15.17213 -15.09982 -14.70908 -14.42516 -14.26651 -14.22161 -13.99801 -13.97293 -13.70935 -13.04606 -13.03828 -12.84630 -12.66562 -12.25787 -12.16989 -12.08528 -12.01219 -11.86577 -11.83949 -11.71766 -11.35996 -11.29506 -11.21790 -10.92331 -10.87837 -10.69913 -10.63050 -8.21174 -6.22055 -1.21269 -0.06915 0.78685 1.35302 1.37484 1.39879 1.46165 1.49566 1.50181 2.39835 2.52277 2.84532 3.13798 3.35170 3.51997 3.61488 3.65201 3.77711 3.90143 3.95892 4.20821 4.25746 4.33963 4.43592 4.48547 4.60185 4.63899 4.68734 4.73157 4.78290 5.01216 5.03341 5.10516 5.14985 5.15641 5.25771 5.36558 5.41284 5.42813 5.57088 5.67564 5.77218 6.21246 6.38177 6.51323 6.59568 6.85216 7.40221 8.94375 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029245 B = 0.002241 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.203829 B =12492.137092 C =13247.673377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.344 6.344 3 C 0.524 3.476 4 O -0.509 6.509 5 C 0.106 3.894 6 C -0.105 4.105 7 C -0.008 4.008 8 C -0.147 4.147 9 C 0.513 3.487 10 O -0.523 6.523 11 O -0.337 6.337 12 C 0.086 3.914 13 C -0.048 4.048 14 C -0.124 4.124 15 C -0.124 4.124 16 C -0.004 4.004 17 C -0.503 4.503 18 H 0.051 0.949 19 C 0.003 3.997 20 N -0.951 5.951 21 Si 0.936 3.064 22 H -0.271 1.271 23 H -0.290 1.290 24 H -0.248 1.248 25 C 0.161 3.839 26 N -0.457 5.457 27 H 0.069 0.931 28 H 0.131 0.869 29 H 0.069 0.931 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.020 0.980 41 H 0.018 0.982 42 H 0.263 0.737 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.656 12.600 0.035 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.259 6.259 3 C 0.367 3.633 4 O -0.397 6.397 5 C -0.030 4.030 6 C -0.124 4.124 7 C -0.034 4.034 8 C -0.150 4.150 9 C 0.357 3.643 10 O -0.414 6.414 11 O -0.252 6.252 12 C 0.013 3.987 13 C -0.048 4.048 14 C -0.181 4.181 15 C -0.181 4.181 16 C -0.041 4.041 17 C -0.541 4.541 18 H 0.069 0.931 19 C -0.193 4.193 20 N -0.592 5.592 21 Si 0.761 3.239 22 H -0.196 1.196 23 H -0.216 1.216 24 H -0.172 1.172 25 C 0.000 4.000 26 N -0.168 5.168 27 H 0.088 0.912 28 H 0.149 0.851 29 H 0.088 0.912 30 H 0.198 0.802 31 H 0.196 0.804 32 H 0.090 0.910 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.088 0.912 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.072 0.928 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -27.026 12.288 0.042 29.689 hybrid contribution 1.541 0.981 0.011 1.826 sum -25.486 13.269 0.053 28.733 Atomic orbital electron populations 1.23706 0.73742 1.06146 1.03132 1.86675 1.25499 1.31058 1.82632 1.20869 0.87880 0.82022 0.72518 1.90850 1.66122 1.36577 1.46169 1.20498 0.91219 0.90884 1.00387 1.22241 0.94503 0.98712 0.96994 1.22001 0.92928 0.98918 0.89511 1.20469 0.90135 0.96989 1.07454 1.21095 0.88579 0.82060 0.72545 1.90844 1.71095 1.32909 1.46503 1.86493 1.22769 1.32994 1.82986 1.23281 0.74311 0.98535 1.02559 1.20456 0.94817 0.92075 0.97471 1.21684 1.00601 1.00049 0.95788 1.21683 1.00561 1.00017 0.95849 1.19580 0.92012 0.95982 0.96562 1.21320 0.91600 0.92669 1.48481 0.93104 1.25868 1.00165 0.98205 0.95047 1.70045 1.12395 1.23308 1.53488 0.85869 0.78325 0.80827 0.78885 1.19633 1.21600 1.17172 1.23530 0.88514 0.98460 0.89450 1.67785 1.08258 1.30103 1.10639 0.91198 0.85056 0.91188 0.80152 0.80437 0.91005 0.90950 0.91212 0.93778 0.93470 0.93499 0.93768 0.91208 0.96206 0.96366 0.92846 0.78728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.56 113.37 1.20 1.45 16 2 O -0.34 -6.11 10.38 -55.69 -0.58 -6.69 16 3 C 0.52 9.99 7.95 70.49 0.56 10.55 16 4 O -0.51 -10.71 16.10 20.15 0.32 -10.39 16 5 C 0.11 1.92 6.75 41.94 0.28 2.20 16 6 C -0.10 -1.44 9.62 22.59 0.22 -1.22 16 7 C -0.01 -0.12 9.71 22.73 0.22 0.10 16 8 C -0.15 -2.70 5.90 -19.94 -0.12 -2.82 16 9 C 0.51 12.22 7.91 70.38 0.56 12.78 16 10 O -0.52 -14.90 16.20 20.02 0.32 -14.58 16 11 O -0.34 -8.58 8.15 -56.01 -0.46 -9.03 16 12 C 0.09 2.57 4.33 71.98 0.31 2.88 16 13 C -0.05 -1.69 0.61 -52.18 -0.03 -1.72 16 14 C -0.12 -4.22 8.08 71.98 0.58 -3.64 16 15 C -0.12 -4.22 8.08 71.98 0.58 -3.64 16 16 C 0.00 -0.17 3.11 29.84 0.09 -0.08 16 17 C -0.50 -26.96 8.20 25.60 0.21 -26.75 16 18 H 0.05 2.97 5.92 -2.91 -0.02 2.95 16 19 C 0.00 0.19 5.47 84.66 0.46 0.65 16 20 N -0.95 -58.23 13.96 21.45 0.30 -57.93 16 21 Si 0.94 43.35 27.47 68.60 1.88 45.23 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 25 C 0.16 2.87 10.78 85.13 0.92 3.79 16 26 N -0.46 -9.03 10.10 -183.90 -1.86 -10.89 16 27 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.13 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.18 1.75 7.63 -2.91 -0.02 1.73 16 31 H 0.18 2.01 7.73 -2.91 -0.02 1.99 16 32 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.07 1.97 7.68 -2.39 -0.02 1.95 16 35 H 0.04 1.74 6.62 -2.39 -0.02 1.72 16 36 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.04 1.74 6.62 -2.38 -0.02 1.73 16 39 H 0.07 1.97 7.68 -2.39 -0.02 1.95 16 40 H 0.02 0.86 7.20 -2.39 -0.02 0.84 16 41 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 42 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 43 H 0.20 2.97 7.62 -2.91 -0.02 2.95 16 Total: -1.00 -68.78 367.71 6.96 -61.82 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.97 Total: 7.90 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 6.04 Total: -5.46 kcal Atomic # 7 Polarization: -67.26 SS G_CDS: -1.56 Total: -68.82 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -0.39 Total: -40.68 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.88 Total: 45.23 kcal Total: -68.78 6.96 -61.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842350841.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.630 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds