Wall clock time and date at job start Tue Mar 31 2020 12:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38253 * 120.00378 * 2 1 4 4 C 1.38209 * 120.00503 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99456 * 359.77010 * 4 3 2 6 6 C 1.38213 * 120.00166 * 0.46836 * 5 4 3 7 7 C 1.50700 * 120.00123 * 179.78445 * 6 5 4 8 8 O 1.42896 * 109.47153 * 269.72327 * 7 6 5 9 9 C 1.42895 * 113.99925 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.47109 * 30.00434 * 9 8 7 11 11 C 1.52999 * 109.47266 * 269.99948 * 9 8 7 12 12 C 1.50706 * 109.47247 * 149.99956 * 9 8 7 13 13 O 1.20830 * 119.99594 * 5.00189 * 12 9 8 14 14 O 1.34222 * 120.00024 * 184.72473 * 12 9 8 15 15 C 1.45201 * 116.99867 * 180.02562 * 14 12 9 16 16 C 1.50695 * 109.47187 * 180.02562 * 15 14 12 17 17 O 1.21290 * 120.00256 * 359.97438 * 16 15 14 18 18 N 1.34776 * 120.00023 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00187 * 179.97438 * 18 16 15 20 20 H 1.08004 * 119.99746 * 0.02562 * 19 18 16 21 21 C 1.38950 * 120.00065 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00128 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99724 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47495 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47119 * 120.00300 * 23 21 19 26 26 H 1.48501 * 109.46899 * 239.99827 * 23 21 19 27 27 C 1.38218 * 119.99684 * 179.97438 * 2 1 3 28 28 H 1.09003 * 109.47105 * 270.02200 * 1 2 3 29 29 H 1.09001 * 109.46913 * 30.01587 * 1 2 3 30 30 H 1.08993 * 109.47380 * 150.01696 * 1 2 3 31 31 H 1.08002 * 119.99733 * 359.97438 * 3 2 1 32 32 H 1.07991 * 120.00234 * 179.97438 * 4 3 2 33 33 H 1.07998 * 119.99709 * 180.24790 * 5 4 3 34 34 H 1.08994 * 109.46869 * 149.72332 * 7 6 5 35 35 H 1.08995 * 109.46804 * 29.72477 * 7 6 5 36 36 H 1.09002 * 109.47253 * 60.00492 * 11 9 8 37 37 H 1.08999 * 109.46938 * 179.97438 * 11 9 8 38 38 H 1.08995 * 109.47123 * 300.00298 * 11 9 8 39 39 H 1.09009 * 109.46864 * 300.00062 * 15 14 12 40 40 H 1.09001 * 109.47271 * 60.00074 * 15 14 12 41 41 H 0.96997 * 120.00313 * 0.02562 * 18 16 15 42 42 H 0.97000 * 119.99579 * 180.02562 * 22 21 19 43 43 H 1.08004 * 119.99951 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1973 0.0005 5 6 4.2717 -0.0002 0.0059 6 6 3.5806 -1.1971 0.0009 7 6 4.3340 -2.5022 0.0018 8 8 4.5722 -2.9157 -1.3451 9 6 5.2849 -4.1491 -1.4571 10 1 5.0564 -4.7800 -0.5981 11 6 6.7883 -3.8677 -1.4977 12 6 4.8716 -4.8551 -2.7228 13 8 4.1200 -4.3136 -3.4986 14 8 5.3429 -6.0829 -2.9910 15 6 4.9028 -6.7021 -4.2284 16 6 5.5293 -8.0666 -4.3578 17 8 6.2738 -8.4767 -3.4926 18 7 5.2622 -8.8313 -5.4351 19 6 5.8326 -10.0724 -5.5531 20 1 6.4955 -10.4376 -4.7826 21 6 5.5577 -10.8606 -6.6640 22 7 4.7515 -10.4161 -7.6017 23 14 6.3343 -12.5519 -6.8244 24 1 7.1964 -12.8148 -5.6442 25 1 5.2669 -13.5817 -6.8976 26 1 7.1574 -12.6035 -8.0593 27 6 2.1980 -1.1970 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3633 0.8899 -0.5141 30 1 -0.3634 -0.8901 -0.5135 31 1 1.6584 2.1326 -0.0004 32 1 4.1204 2.1325 0.0001 33 1 5.3517 -0.0002 0.0103 34 1 3.7449 -3.2614 0.5161 35 1 5.2864 -2.3715 0.5156 36 1 7.0872 -3.3572 -0.5822 37 1 7.3319 -4.8086 -1.5827 38 1 7.0167 -3.2368 -2.3567 39 1 3.8172 -6.8005 -4.2194 40 1 5.2045 -6.0819 -5.0724 41 1 4.6672 -8.5032 -6.1272 42 1 4.5593 -10.9665 -8.3770 43 1 1.6580 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869641065.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:59 Heat of formation + Delta-G solvation = -166.850822 kcal Electronic energy + Delta-G solvation = -25523.185292 eV Core-core repulsion = 21532.741231 eV Total energy + Delta-G solvation = -3990.444061 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.82459 -40.51475 -40.08791 -38.94653 -37.44392 -36.04597 -34.21567 -33.43933 -33.07066 -31.97091 -30.00683 -27.95746 -27.19742 -26.75622 -25.35042 -23.03760 -22.08437 -21.65417 -21.44705 -20.09243 -19.00362 -18.39803 -17.92517 -17.54456 -17.39495 -17.12250 -16.77874 -16.55863 -16.00176 -15.85797 -15.71042 -15.33000 -14.91569 -14.62203 -14.39381 -14.14959 -13.98313 -13.79793 -13.71710 -13.57397 -13.35308 -13.17592 -12.95184 -12.89993 -12.82385 -12.52729 -12.47133 -12.10716 -11.94346 -11.92001 -11.81421 -11.59489 -11.52425 -10.81020 -10.52753 -10.13156 -9.80567 -9.55285 -8.53369 -6.04195 0.27024 0.46565 0.99177 1.12867 1.34227 1.43514 1.58246 1.84922 2.26906 2.55515 2.96013 3.11966 3.12110 3.53909 3.75665 3.80154 3.90215 3.94434 4.02363 4.05442 4.12047 4.19189 4.21614 4.31567 4.36357 4.50763 4.59603 4.69162 4.73951 4.80949 4.81578 4.96653 5.12562 5.15882 5.23083 5.28825 5.36531 5.53334 5.62525 5.67137 5.87140 5.91824 6.09939 6.43789 6.59421 7.01542 7.38114 7.90995 8.63886 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.001913 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.604580 B =14629.362200 C =15221.623681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.103 4.103 3 C -0.123 4.123 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.104 4.104 7 C 0.096 3.904 8 O -0.378 6.378 9 C 0.105 3.895 10 H 0.128 0.872 11 C -0.164 4.164 12 C 0.456 3.544 13 O -0.523 6.523 14 O -0.335 6.335 15 C 0.070 3.930 16 C 0.438 3.562 17 O -0.615 6.615 18 N -0.558 5.558 19 C -0.337 4.337 20 H 0.086 0.914 21 C -0.011 4.011 22 N -0.916 5.916 23 Si 1.000 3.000 24 H -0.270 1.270 25 H -0.270 1.270 26 H -0.270 1.270 27 C -0.118 4.118 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.138 0.862 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.061 0.939 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.400 0.600 42 H 0.281 0.719 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 22.354 16.426 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.103 4.103 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.132 4.132 6 C -0.104 4.104 7 C 0.021 3.979 8 O -0.298 6.298 9 C 0.046 3.954 10 H 0.146 0.854 11 C -0.221 4.221 12 C 0.299 3.701 13 O -0.411 6.411 14 O -0.251 6.251 15 C -0.007 4.007 16 C 0.225 3.775 17 O -0.502 6.502 18 N -0.195 5.195 19 C -0.466 4.466 20 H 0.104 0.896 21 C -0.211 4.211 22 N -0.556 5.556 23 Si 0.823 3.177 24 H -0.194 1.194 25 H -0.195 1.195 26 H -0.195 1.195 27 C -0.136 4.136 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.080 0.920 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.234 0.766 42 H 0.090 0.910 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.214 22.244 16.403 27.957 hybrid contribution -0.192 -0.841 -0.830 1.197 sum -4.406 21.402 15.573 26.833 Atomic orbital electron populations 1.20832 0.89738 1.03348 1.03131 1.20246 0.97427 0.93071 0.99558 1.21411 0.94707 0.98160 0.99782 1.21463 0.94588 0.98696 0.99625 1.21321 1.00868 0.91871 0.99168 1.19723 0.93852 0.94568 1.02277 1.21682 1.00151 0.93577 0.82475 1.88066 1.76608 1.36828 1.28256 1.21520 0.94472 0.86777 0.92600 0.85426 1.22223 0.90889 1.04061 1.04963 1.24339 0.77360 0.79394 0.89042 1.90657 1.34567 1.66331 1.49566 1.86519 1.66775 1.30682 1.41099 1.22542 1.00571 0.91966 0.85603 1.20010 0.86188 0.87319 0.83985 1.90522 1.41785 1.75068 1.42794 1.41755 1.42800 1.15502 1.19475 1.19779 1.27091 0.92715 1.07021 0.89595 1.26164 0.96898 1.03723 0.94333 1.69685 1.35596 1.39885 1.10415 0.84770 0.78105 0.76399 0.78439 1.19436 1.19479 1.19495 1.21170 0.93843 0.98432 1.00118 0.90034 0.90444 0.91734 0.84021 0.83678 0.84455 0.90901 0.89260 0.87614 0.90006 0.92027 0.87699 0.87745 0.76607 0.90965 0.86004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.10 -1.76 5.88 -19.87 -0.12 -1.88 16 3 C -0.12 -1.85 9.70 22.27 0.22 -1.64 16 4 C -0.13 -1.87 10.05 22.27 0.22 -1.65 16 5 C -0.11 -1.92 9.70 22.27 0.22 -1.70 16 6 C -0.10 -2.01 5.51 -19.87 -0.11 -2.12 16 7 C 0.10 1.66 5.87 71.24 0.42 2.08 16 8 O -0.38 -9.35 9.51 -129.95 -1.24 -10.59 16 9 C 0.11 2.45 3.24 29.85 0.10 2.55 16 10 H 0.13 2.26 7.79 -2.39 -0.02 2.24 16 11 C -0.16 -3.11 9.50 71.98 0.68 -2.43 16 12 C 0.46 14.93 7.29 71.24 0.52 15.45 16 13 O -0.52 -20.08 16.26 28.37 0.46 -19.62 16 14 O -0.34 -12.45 9.75 -44.98 -0.44 -12.88 16 15 C 0.07 2.71 5.94 71.23 0.42 3.14 16 16 C 0.44 21.49 7.86 87.66 0.69 22.18 16 17 O -0.61 -34.72 16.08 15.74 0.25 -34.47 16 18 N -0.56 -28.76 5.29 -306.98 -1.62 -30.38 16 19 C -0.34 -18.91 9.68 84.04 0.81 -18.10 16 20 H 0.09 5.10 7.16 -2.91 -0.02 5.08 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -48.79 13.05 21.66 0.28 -48.51 16 23 Si 1.00 41.97 29.55 68.60 2.03 44.00 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 26 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 27 C -0.12 -2.31 9.36 22.27 0.21 -2.10 16 28 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.78 8.09 -2.39 -0.02 0.76 16 30 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.15 1.40 8.06 -2.92 -0.02 1.38 16 33 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 34 H 0.07 1.07 8.03 -2.39 -0.02 1.05 16 35 H 0.09 1.05 7.81 -2.39 -0.02 1.03 16 36 H 0.11 1.30 7.87 -2.39 -0.02 1.28 16 37 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.11 3.67 8.14 -2.38 -0.02 3.65 16 40 H 0.10 3.67 8.13 -2.39 -0.02 3.65 16 41 H 0.40 19.50 7.90 -92.71 -0.73 18.77 16 42 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.12 2.26 8.06 -2.91 -0.02 2.24 16 Total: -1.00 -73.91 379.86 5.48 -68.42 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.29 Total: 31.03 kcal Atomic # 6 Polarization: 7.53 SS G_CDS: 5.46 Total: 12.99 kcal Atomic # 7 Polarization: -77.55 SS G_CDS: -1.34 Total: -78.89 kcal Atomic # 8 Polarization: -76.59 SS G_CDS: -0.96 Total: -77.55 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -73.91 5.48 -68.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869641065.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.427 kcal (2) G-P(sol) polarization free energy of solvation -73.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds