Wall clock time and date at job start Tue Mar 31 2020 12:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38281 * 119.92447 * 2 1 4 4 C 1.38109 * 120.07024 * 179.97438 * 3 2 1 5 5 C 1.38872 * 119.92669 * 359.97438 * 4 3 2 6 6 N 1.39925 * 120.06972 * 179.97438 * 5 4 3 7 7 C 1.46506 * 120.00079 * 173.04733 * 6 5 4 8 8 C 1.50706 * 109.47000 * 275.63646 * 7 6 5 9 9 H 1.08003 * 119.99908 * 359.97438 * 8 7 6 10 10 C 1.37878 * 119.99657 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99754 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99923 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47137 * 89.99986 * 12 10 8 14 14 H 1.48505 * 109.46859 * 209.99550 * 12 10 8 15 15 H 1.48493 * 109.47408 * 329.99665 * 12 10 8 16 16 C 1.34775 * 120.00057 * 353.05422 * 6 5 4 17 17 O 1.21290 * 119.99897 * 4.49193 * 16 6 5 18 18 C 1.50702 * 120.00154 * 184.49677 * 16 6 5 19 19 H 1.09002 * 109.47034 * 46.02650 * 18 16 6 20 20 C 1.52997 * 109.47049 * 286.03141 * 18 16 6 21 21 O 1.45201 * 109.47059 * 166.03152 * 18 16 6 22 22 C 1.34234 * 116.99673 * 209.99883 * 21 18 16 23 23 O 1.20826 * 119.99887 * 359.97438 * 22 21 18 24 24 C 1.50697 * 119.99598 * 179.97438 * 22 21 18 25 25 O 1.42909 * 109.46797 * 179.97438 * 24 22 21 26 26 C 1.38870 * 119.86081 * 0.24832 * 5 4 3 27 27 C 1.38119 * 119.92729 * 359.51721 * 26 5 4 28 28 H 1.08999 * 109.47002 * 90.00165 * 1 2 3 29 29 H 1.09000 * 109.46918 * 209.99339 * 1 2 3 30 30 H 1.08991 * 109.47268 * 329.99686 * 1 2 3 31 31 H 1.08001 * 119.96645 * 359.97438 * 3 2 1 32 32 H 1.07997 * 120.03934 * 179.97438 * 4 3 2 33 33 H 1.08993 * 109.46894 * 35.63295 * 7 6 5 34 34 H 1.08999 * 109.47041 * 155.63660 * 7 6 5 35 35 H 0.96998 * 119.99828 * 180.02562 * 11 10 8 36 36 H 1.09003 * 109.47165 * 58.32071 * 20 18 16 37 37 H 1.09000 * 109.47203 * 178.32556 * 20 18 16 38 38 H 1.09003 * 109.47222 * 298.32467 * 20 18 16 39 39 H 1.08992 * 109.47384 * 299.99823 * 24 22 21 40 40 H 1.09004 * 109.47317 * 60.00524 * 24 22 21 41 41 H 0.96701 * 113.99933 * 180.02562 * 25 24 22 42 42 H 1.08006 * 120.03925 * 179.74603 * 26 5 4 43 43 H 1.07997 * 119.96058 * 180.22944 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5780 1.2020 0.0005 5 6 4.2739 0.0002 0.0016 6 7 5.6731 0.0002 0.0016 7 6 6.4057 -1.2590 0.1563 8 6 6.5360 -1.5876 1.6213 9 1 6.1156 -0.9245 2.3630 10 6 7.1920 -2.7348 2.0148 11 7 7.3062 -3.0213 3.2932 12 14 7.9198 -3.8812 0.7320 13 1 9.3194 -3.4770 0.4440 14 1 7.9027 -5.2742 1.2464 15 1 7.1159 -3.8038 -0.5141 16 6 6.3469 1.1588 -0.1406 17 8 5.7432 2.2097 -0.1867 18 6 7.8505 1.1484 -0.2424 19 1 8.1618 0.3737 -0.9432 20 6 8.4529 0.8623 1.1346 21 8 8.3126 2.4417 -0.7137 22 6 9.4465 2.4590 -1.4318 23 8 10.0337 1.4276 -1.6587 24 6 9.9871 3.7647 -1.9551 25 8 11.1935 3.5235 -2.6822 26 6 3.5781 -1.2017 -0.0031 27 6 2.1969 -1.1983 0.0013 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8901 0.5137 30 1 -0.3633 0.8899 0.5138 31 1 1.6551 2.1327 -0.0004 32 1 4.1162 2.1383 0.0001 33 1 5.8641 -2.0588 -0.3486 34 1 7.3981 -1.1584 -0.2832 35 1 7.7680 -3.8281 3.5701 36 1 8.0825 -0.0950 1.5015 37 1 9.5394 0.8253 1.0553 38 1 8.1659 1.6528 1.8281 39 1 9.2510 4.2247 -2.6142 40 1 10.1946 4.4331 -1.1194 41 1 11.5983 4.3217 -3.0485 42 1 4.1164 -2.1380 -0.0064 43 1 1.6553 -2.1327 0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909119535.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:14 Heat of formation + Delta-G solvation = -117.537486 kcal Electronic energy + Delta-G solvation = -27637.518897 eV Core-core repulsion = 23649.213223 eV Total energy + Delta-G solvation = -3988.305674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.88844 -40.06299 -38.22119 -37.13397 -36.04697 -35.69794 -33.02057 -32.25975 -30.81613 -30.44702 -28.49006 -28.26695 -26.29266 -24.10161 -23.31025 -21.87342 -21.55944 -20.57764 -19.21929 -18.39782 -17.40041 -17.16942 -16.87609 -16.63285 -16.30082 -16.03800 -15.12108 -14.98644 -14.58815 -14.36084 -14.13523 -13.86343 -13.52396 -13.39541 -13.26311 -12.95483 -12.74973 -12.62529 -12.40170 -12.12278 -11.99297 -11.87029 -11.70757 -11.28605 -11.22009 -11.09417 -10.81859 -10.64242 -10.57899 -10.53377 -10.47331 -10.35227 -9.84613 -9.25252 -8.88964 -8.75545 -8.41732 -7.23608 -6.37862 -4.41548 1.71515 1.93782 2.16150 2.21652 2.93837 3.10060 3.16477 3.20439 3.43507 4.13130 4.25442 4.33740 4.60921 4.69800 4.85999 4.90134 4.91338 5.15311 5.25537 5.28573 5.33583 5.52107 5.59279 5.77008 5.88439 5.97259 6.04354 6.05795 6.12499 6.16961 6.30768 6.39077 6.50214 6.59271 6.82446 6.87162 6.90379 7.05361 7.11789 7.16838 7.19326 7.67280 7.74221 7.79933 8.17454 8.45763 8.68007 9.17544 10.73153 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009215 B = 0.005102 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.685056 B = 5487.026919 C = 7910.061185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.127 4.127 3 C -0.105 4.105 4 C -0.173 4.173 5 C 0.167 3.833 6 N -0.523 5.523 7 C 0.191 3.809 8 C -0.546 4.546 9 H 0.086 0.914 10 C 0.085 3.915 11 N -0.877 5.877 12 Si 0.862 3.138 13 H -0.267 1.267 14 H -0.279 1.279 15 H -0.262 1.262 16 C 0.525 3.475 17 O -0.519 6.519 18 C 0.082 3.918 19 H 0.109 0.891 20 C -0.188 4.188 21 O -0.333 6.333 22 C 0.455 3.545 23 O -0.486 6.486 24 C 0.090 3.910 25 O -0.551 6.551 26 C -0.137 4.137 27 C -0.102 4.102 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.116 0.884 32 H 0.179 0.821 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.270 0.730 36 H 0.137 0.863 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.392 0.608 42 H 0.133 0.867 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.969 10.136 -9.137 13.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.128 4.128 3 C -0.124 4.124 4 C -0.192 4.192 5 C 0.072 3.928 6 N -0.243 5.243 7 C 0.071 3.929 8 C -0.584 4.584 9 H 0.104 0.896 10 C -0.121 4.121 11 N -0.513 5.513 12 Si 0.688 3.312 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.187 1.187 16 C 0.314 3.686 17 O -0.397 6.397 18 C 0.025 3.975 19 H 0.127 0.873 20 C -0.245 4.245 21 O -0.249 6.249 22 C 0.296 3.704 23 O -0.372 6.372 24 C 0.012 3.988 25 O -0.357 6.357 26 C -0.157 4.157 27 C -0.121 4.121 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.195 0.805 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.241 0.759 42 H 0.151 0.849 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.067 9.567 -8.899 13.228 hybrid contribution 0.652 -0.471 -0.551 0.976 sum -1.415 9.095 -9.450 13.192 Atomic orbital electron populations 1.20673 0.91949 1.02087 1.01451 1.19804 0.95545 0.93480 1.03972 1.20906 0.93899 0.96902 1.00700 1.22704 0.94428 1.00107 1.01968 1.17937 0.81783 0.94475 0.98570 1.45464 1.04413 1.08913 1.65464 1.20260 0.92042 0.80988 0.99618 1.21143 1.38380 1.09203 0.89626 0.89650 1.24820 0.95097 0.96950 0.95227 1.69866 1.40891 1.25914 1.14596 0.87048 0.80768 0.81170 0.82231 1.19258 1.20427 1.18692 1.20068 0.88666 0.83339 0.76518 1.90291 1.67969 1.31432 1.50035 1.22563 0.91688 0.83508 0.99746 0.87318 1.22656 1.01291 1.07654 0.92869 1.86500 1.39436 1.35202 1.63804 1.23297 0.79382 0.91745 0.76000 1.90702 1.57589 1.34774 1.54159 1.21267 0.88492 0.91563 0.97516 1.86528 1.38728 1.37331 1.73149 1.20967 0.94123 0.97255 1.03394 1.20716 0.93320 0.97204 1.00827 0.92030 0.92094 0.92158 0.86612 0.80475 0.93558 0.94203 0.91947 0.84502 0.91670 0.91564 0.88985 0.88951 0.75935 0.84919 0.86358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.01 36.01 0.36 -0.86 16 2 C -0.13 -1.96 5.88 -104.59 -0.62 -2.57 16 3 C -0.11 -1.73 9.69 -39.61 -0.38 -2.11 16 4 C -0.17 -3.30 9.05 -39.39 -0.36 -3.66 16 5 C 0.17 3.39 6.46 -83.69 -0.54 2.85 16 6 N -0.52 -10.88 2.69 -114.73 -0.31 -11.19 16 7 C 0.19 4.10 3.23 -5.19 -0.02 4.09 16 8 C -0.55 -13.54 7.35 -34.44 -0.25 -13.79 16 9 H 0.09 2.40 8.06 -52.48 -0.42 1.98 16 10 C 0.09 2.17 5.47 -17.82 -0.10 2.08 16 11 N -0.88 -24.23 13.96 55.43 0.77 -23.46 16 12 Si 0.86 19.04 27.47 -169.99 -4.67 14.37 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 15 H -0.26 -5.48 6.54 56.52 0.37 -5.11 16 16 C 0.53 10.70 6.96 -10.99 -0.08 10.62 16 17 O -0.52 -10.97 12.96 -13.69 -0.18 -11.15 16 18 C 0.08 1.54 2.14 -27.88 -0.06 1.49 16 19 H 0.11 2.04 5.84 -51.93 -0.30 1.74 16 20 C -0.19 -3.54 9.30 37.16 0.35 -3.20 16 21 O -0.33 -5.67 9.45 -45.80 -0.43 -6.10 16 22 C 0.45 7.08 8.01 36.00 0.29 7.36 16 23 O -0.49 -9.28 15.72 -25.48 -0.40 -9.68 16 24 C 0.09 0.89 7.64 36.00 0.27 1.16 16 25 O -0.55 -5.67 13.19 -55.18 -0.73 -6.40 16 26 C -0.14 -2.59 9.26 -39.39 -0.36 -2.96 16 27 C -0.10 -1.67 9.69 -39.61 -0.38 -2.06 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.18 3.56 4.54 -56.20 -0.25 3.31 16 33 H 0.05 0.98 5.31 -51.93 -0.28 0.70 16 34 H 0.04 0.83 5.03 -51.93 -0.26 0.57 16 35 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 36 H 0.14 2.94 4.25 -51.93 -0.22 2.72 16 37 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.39 1.52 9.12 45.56 0.42 1.94 16 42 H 0.13 2.54 6.13 -52.48 -0.32 2.22 16 43 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -32.25 355.91 -7.07 -39.32 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -4.61 Total: 10.48 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: -1.88 Total: -1.56 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.46 Total: -34.65 kcal Atomic # 8 Polarization: -31.59 SS G_CDS: -1.74 Total: -33.33 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.67 Total: 14.37 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.25 -7.07 -39.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909119535.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.222 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds