Wall clock time and date at job start Tue Mar 31 2020 12:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34632 * 117.00116 * 2 1 4 4 O 1.21499 * 120.00266 * 0.02562 * 3 2 1 5 5 N 1.34785 * 120.00036 * 180.02562 * 3 2 1 6 6 C 1.39410 * 119.99754 * 175.47868 * 5 3 2 7 7 C 1.39173 * 119.92623 * 35.84729 * 6 5 3 8 8 C 1.37614 * 120.07922 * 180.27732 * 7 6 5 9 9 C 1.39834 * 119.92280 * 359.49419 * 8 7 6 10 10 C 1.47449 * 120.07883 * 180.23047 * 9 8 7 11 11 O 1.21510 * 119.99869 * 173.51985 * 10 9 8 12 12 O 1.34744 * 120.00205 * 353.51999 * 10 9 8 13 13 C 1.45204 * 117.00111 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.47069 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47060 * 180.02562 * 14 13 12 16 16 C 1.50694 * 109.47028 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00596 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99928 * 179.97438 * 16 15 14 19 19 N 1.31508 * 119.99919 * 180.02562 * 18 16 15 20 20 Si 1.86795 * 119.99871 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47420 * 89.99906 * 20 18 16 22 22 H 1.48500 * 109.47131 * 209.99843 * 20 18 16 23 23 H 1.48503 * 109.47469 * 329.99677 * 20 18 16 24 24 C 1.39798 * 119.83977 * 0.25658 * 9 8 7 25 25 C 1.50702 * 120.03687 * 180.02562 * 24 9 8 26 26 C 1.37658 * 119.91831 * 359.97438 * 24 9 8 27 27 H 1.09003 * 109.47452 * 59.99230 * 1 2 3 28 28 H 1.09003 * 109.47263 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46843 * 299.99668 * 1 2 3 30 30 H 0.96998 * 119.99395 * 355.47746 * 5 3 2 31 31 H 1.08005 * 119.95807 * 0.05199 * 7 6 5 32 32 H 1.08002 * 120.03670 * 179.77498 * 8 7 6 33 33 H 1.08998 * 109.47482 * 300.00164 * 13 12 10 34 34 H 1.09002 * 109.46795 * 60.00255 * 13 12 10 35 35 H 1.09002 * 109.47625 * 300.00347 * 14 13 12 36 36 H 1.09002 * 109.47062 * 60.00470 * 14 13 12 37 37 H 1.09002 * 109.46895 * 300.00440 * 15 14 13 38 38 H 1.09002 * 109.47088 * 60.00131 * 15 14 13 39 39 H 0.97008 * 119.99780 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.47126 * 83.07752 * 25 24 9 41 41 H 1.09000 * 109.46879 * 203.08038 * 25 24 9 42 42 H 1.08997 * 109.47333 * 323.07242 * 25 24 9 43 43 H 1.08005 * 119.95747 * 179.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1996 0.0000 4 8 1.4015 2.2186 0.0005 5 7 3.4092 1.2701 -0.0005 6 6 4.0422 2.5085 -0.0957 7 6 3.4838 3.6231 0.5230 8 6 4.1030 4.8482 0.4263 9 6 5.3003 4.9704 -0.2858 10 6 5.9693 6.2805 -0.3873 11 8 7.0660 6.3642 -0.9038 12 8 5.3646 7.3848 0.0926 13 6 6.0821 8.6401 -0.0410 14 6 5.2441 9.7726 0.5557 15 6 5.9998 11.0954 0.4143 16 6 5.1747 12.2107 1.0027 17 1 4.2081 11.9974 1.4346 18 6 5.6542 13.5034 0.9904 19 7 4.9343 14.4766 1.5043 20 14 7.3263 13.8723 0.2440 21 1 7.1666 14.1818 -1.1996 22 1 7.9311 15.0385 0.9363 23 1 8.2107 12.6898 0.4017 24 6 5.8610 3.8476 -0.9016 25 6 7.1515 3.9742 -1.6696 26 6 5.2336 2.6262 -0.8046 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 3.9373 0.4591 0.0653 31 1 2.5614 3.5271 1.0766 32 1 3.6671 5.7135 0.9036 33 1 7.0327 8.5734 0.4881 34 1 6.2669 8.8424 -1.0960 35 1 4.2936 9.8392 0.0263 36 1 5.0589 9.5705 1.6107 37 1 6.9505 11.0290 0.9435 38 1 6.1847 11.2973 -0.6408 39 1 5.2715 15.3862 1.4954 40 1 7.9924 3.9220 -0.9781 41 1 7.2249 3.1621 -2.3929 42 1 7.1704 4.9299 -2.1933 43 1 5.6661 1.7584 -1.2805 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909668332.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:35 Heat of formation + Delta-G solvation = -164.949779 kcal Electronic energy + Delta-G solvation = -25636.094371 eV Core-core repulsion = 21645.732746 eV Total energy + Delta-G solvation = -3990.361625 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.20071 -41.59358 -40.10277 -38.11632 -37.55305 -36.23558 -35.94770 -33.93825 -33.48897 -31.61707 -29.50560 -28.47359 -28.18740 -25.51987 -24.50173 -23.57822 -22.60017 -22.08619 -21.46846 -20.14383 -19.01291 -18.91689 -18.49734 -17.93960 -17.68707 -17.61639 -17.20304 -16.35043 -16.18392 -15.79263 -15.52831 -15.17508 -14.84504 -14.77832 -14.64183 -14.46880 -14.21123 -13.87791 -13.77782 -13.65100 -13.34511 -13.09688 -13.02779 -12.83667 -12.61176 -12.39849 -12.03197 -11.98825 -11.91000 -11.84543 -11.75643 -11.49870 -11.38676 -11.36099 -11.09935 -10.77782 -9.90627 -9.45561 -8.30380 -6.35505 -0.51079 0.26272 0.91068 1.27669 1.36937 1.38470 1.50437 1.61815 1.66987 2.35741 2.63162 3.04143 3.04624 3.57584 3.67770 3.78388 4.01284 4.03329 4.07099 4.22599 4.25238 4.33445 4.35798 4.38362 4.64449 4.70299 4.74086 4.75230 4.83139 4.84714 4.90587 4.95579 5.06371 5.10400 5.20843 5.29903 5.31782 5.44333 5.48604 5.57479 5.62776 5.77715 6.10550 6.25566 6.67918 6.73033 7.04271 7.28814 8.86198 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020793 B = 0.002094 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.309978 B =13369.781578 C =14607.859090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 O -0.363 6.363 3 C 0.646 3.354 4 O -0.581 6.581 5 N -0.634 5.634 6 C 0.198 3.802 7 C -0.150 4.150 8 C -0.040 4.040 9 C -0.161 4.161 10 C 0.502 3.498 11 O -0.523 6.523 12 O -0.359 6.359 13 C 0.077 3.923 14 C -0.093 4.093 15 C -0.009 4.009 16 C -0.535 4.535 17 H 0.034 0.966 18 C 0.004 3.996 19 N -0.950 5.950 20 Si 0.951 3.049 21 H -0.266 1.266 22 H -0.283 1.283 23 H -0.245 1.245 24 C 0.000 4.000 25 C -0.120 4.120 26 C -0.140 4.140 27 H 0.062 0.938 28 H 0.140 0.860 29 H 0.063 0.937 30 H 0.438 0.562 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.025 0.975 39 H 0.267 0.733 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.440 -37.433 -5.606 37.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 O -0.276 6.276 3 C 0.400 3.600 4 O -0.471 6.471 5 N -0.287 5.287 6 C 0.103 3.897 7 C -0.170 4.170 8 C -0.059 4.059 9 C -0.163 4.163 10 C 0.350 3.650 11 O -0.415 6.415 12 O -0.275 6.275 13 C 0.004 3.996 14 C -0.131 4.131 15 C -0.046 4.046 16 C -0.573 4.573 17 H 0.052 0.948 18 C -0.193 4.193 19 N -0.590 5.590 20 Si 0.774 3.226 21 H -0.191 1.191 22 H -0.209 1.209 23 H -0.168 1.168 24 C -0.001 4.001 25 C -0.176 4.176 26 C -0.160 4.160 27 H 0.081 0.919 28 H 0.158 0.842 29 H 0.082 0.918 30 H 0.279 0.721 31 H 0.158 0.842 32 H 0.159 0.841 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.043 0.957 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.090 0.910 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.587 -36.824 -5.720 37.300 hybrid contribution 0.270 0.854 0.104 0.902 sum -1.317 -35.970 -5.616 36.430 Atomic orbital electron populations 1.23605 0.72110 1.06041 1.02863 1.86262 1.26152 1.28981 1.86214 1.18286 0.83349 0.82719 0.75632 1.91050 1.65172 1.35848 1.54986 1.41699 1.03349 1.09319 1.74317 1.17731 0.92840 0.84424 0.94695 1.21237 1.01999 0.91938 1.01862 1.21382 0.91989 0.98211 0.94347 1.19095 0.98774 0.90286 1.08167 1.21481 0.83654 0.85313 0.74578 1.90772 1.21277 1.87262 1.42141 1.86541 1.49839 1.17050 1.74101 1.23193 0.95294 0.79285 1.01872 1.21330 0.98852 0.91958 1.00969 1.19446 0.96113 0.92156 0.96892 1.21406 1.04365 0.92686 1.38814 0.94773 1.26030 1.01944 0.95944 0.95407 1.70065 1.40315 1.01113 1.47505 0.85641 0.79451 0.78605 0.78873 1.19066 1.20853 1.16839 1.19979 0.96138 0.90700 0.93312 1.21097 0.92580 1.04055 0.99844 1.20916 0.95683 0.98352 1.01086 0.91915 0.84184 0.91773 0.72107 0.84243 0.84146 0.90867 0.90934 0.92037 0.91910 0.95485 0.95657 0.92398 0.90151 0.88889 0.91001 0.80568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -4.37 10.61 -55.41 -0.59 -4.96 16 3 C 0.65 10.60 8.58 129.79 1.11 11.71 16 4 O -0.58 -13.83 13.59 19.85 0.27 -13.56 16 5 N -0.63 -7.30 5.32 -429.46 -2.28 -9.58 16 6 C 0.20 3.16 6.28 38.38 0.24 3.41 16 7 C -0.15 -3.16 8.66 22.35 0.19 -2.97 16 8 C -0.04 -0.95 9.60 22.51 0.22 -0.73 16 9 C -0.16 -4.01 5.88 -20.09 -0.12 -4.13 16 10 C 0.50 15.34 7.82 70.25 0.55 15.89 16 11 O -0.52 -17.18 13.13 19.80 0.26 -16.92 16 12 O -0.36 -11.86 9.48 -56.55 -0.54 -12.39 16 13 C 0.08 2.66 5.48 71.98 0.39 3.05 16 14 C -0.09 -3.76 5.53 30.60 0.17 -3.60 16 15 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 16 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 17 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 18 C 0.00 0.22 5.47 84.66 0.46 0.68 16 19 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 20 Si 0.95 44.56 27.47 68.60 1.88 46.44 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.24 -10.61 6.54 99.48 0.65 -9.95 16 24 C 0.00 0.00 5.91 -19.62 -0.12 -0.12 16 25 C -0.12 -2.09 8.71 71.24 0.62 -1.47 16 26 C -0.14 -1.87 9.57 22.35 0.21 -1.66 16 27 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.14 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.44 1.73 8.93 -92.71 -0.83 0.90 16 31 H 0.14 3.16 6.27 -2.91 -0.02 3.14 16 32 H 0.14 3.34 7.62 -2.91 -0.02 3.32 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 36 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 37 H 0.03 1.23 7.20 -2.39 -0.02 1.22 16 38 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 39 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 41 H 0.09 1.01 8.03 -2.39 -0.02 0.99 16 42 H 0.07 1.66 5.88 -2.39 -0.01 1.65 16 43 H 0.18 0.94 8.05 -2.91 -0.02 0.92 16 Total: -1.00 -76.30 367.03 4.97 -71.33 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: 0.16 Total: 9.30 kcal Atomic # 6 Polarization: -15.23 SS G_CDS: 5.51 Total: -9.73 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.98 Total: -69.52 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -0.59 Total: -47.82 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -76.30 4.97 -71.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909668332.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.618 kcal (2) G-P(sol) polarization free energy of solvation -76.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds