Wall clock time and date at job start Tue Mar 31 2020 12:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00425 * 2 1 4 4 H 1.48501 * 109.47049 * 239.99541 * 3 2 1 5 5 H 1.48497 * 109.47163 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47216 * 119.99837 * 3 2 1 7 7 C 1.37877 * 119.99645 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00142 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47556 * 180.02562 * 10 9 7 12 12 O 1.45192 * 109.47508 * 179.97438 * 11 10 9 13 13 C 1.34225 * 117.00088 * 179.97438 * 12 11 10 14 14 O 1.20822 * 120.00203 * 359.97438 * 13 12 11 15 15 C 1.50703 * 119.99932 * 180.02562 * 13 12 11 16 16 H 1.09004 * 109.47113 * 300.00097 * 15 13 12 17 17 C 1.53002 * 109.47292 * 59.99960 * 15 13 12 18 18 O 1.42907 * 109.46886 * 55.00072 * 17 15 13 19 19 N 1.46506 * 109.47289 * 180.02562 * 15 13 12 20 20 C 1.34767 * 120.00003 * 154.99668 * 19 15 13 21 21 O 1.21554 * 120.00653 * 0.02562 * 20 19 15 22 22 C 1.47856 * 120.00106 * 179.97438 * 20 19 15 23 23 C 1.39580 * 120.13766 * 359.72787 * 22 20 19 24 24 C 1.37956 * 119.84474 * 179.79031 * 23 22 20 25 25 C 1.38355 * 120.14830 * 0.48061 * 24 23 22 26 26 C 1.38357 * 120.29170 * 359.75052 * 25 24 23 27 27 C 1.37952 * 120.14831 * 0.02562 * 26 25 24 28 28 H 0.97002 * 119.99831 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47409 * 60.00217 * 9 7 2 30 30 H 1.09001 * 109.47625 * 299.99609 * 9 7 2 31 31 H 1.08998 * 109.47380 * 59.99514 * 10 9 7 32 32 H 1.09009 * 109.46743 * 300.00179 * 10 9 7 33 33 H 1.09004 * 109.46728 * 59.99850 * 11 10 9 34 34 H 1.09001 * 109.46610 * 300.00192 * 11 10 9 35 35 H 1.08998 * 109.47000 * 174.99468 * 17 15 13 36 36 H 1.09000 * 109.47089 * 295.00077 * 17 15 13 37 37 H 0.96699 * 113.99517 * 179.97438 * 18 17 15 38 38 H 0.96996 * 119.99678 * 335.00455 * 19 15 13 39 39 H 1.07991 * 120.07569 * 0.02562 * 23 22 20 40 40 H 1.08003 * 119.92287 * 180.23337 * 24 23 22 41 41 H 1.08003 * 119.85113 * 179.71901 * 25 24 23 42 42 H 1.08005 * 119.92272 * 179.97438 * 26 25 24 43 43 H 1.07995 * 120.07695 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4991 0.0005 10 6 2.2450 -3.6622 0.0018 11 6 1.4799 -4.9872 0.0012 12 8 2.4233 -6.0908 0.0018 13 6 1.9102 -7.3311 0.0019 14 8 0.7124 -7.4894 0.0019 15 6 2.8282 -8.5263 0.0031 16 1 3.4577 -8.5018 -0.8864 17 6 3.7099 -8.4910 1.2530 18 8 2.8840 -8.4056 2.4162 19 7 2.0302 -9.7550 0.0023 20 6 2.5508 -10.8963 -0.4903 21 8 3.6826 -10.9065 -0.9335 22 6 1.7457 -12.1364 -0.4905 23 6 0.4482 -12.1297 0.0239 24 6 -0.2992 -13.2893 0.0166 25 6 0.2383 -14.4593 -0.4898 26 6 1.5255 -14.4738 -0.9968 27 6 2.2820 -13.3202 -0.9998 28 1 -0.4850 0.8401 -0.0004 29 1 0.6245 -2.5571 -0.8897 30 1 0.6238 -2.5567 0.8903 31 1 2.8710 -3.6041 0.8922 32 1 2.8723 -3.6048 -0.8878 33 1 0.8543 -5.0450 -0.8895 34 1 0.8523 -5.0447 0.8905 35 1 4.3104 -9.3994 1.2998 36 1 4.3672 -7.6226 1.2095 37 1 3.3772 -8.3796 3.2475 38 1 1.1272 -9.7470 0.3562 39 1 0.0290 -11.2181 0.4231 40 1 -1.3047 -13.2846 0.4109 41 1 -0.3495 -15.3653 -0.4889 42 1 1.9393 -15.3905 -1.3903 43 1 3.2868 -13.3329 -1.3954 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000920537974.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:52 Heat of formation + Delta-G solvation = -155.572970 kcal Electronic energy + Delta-G solvation = -25841.390067 eV Core-core repulsion = 21851.435051 eV Total energy + Delta-G solvation = -3989.955016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.00551 -40.11564 -38.67206 -37.23020 -36.57416 -34.75341 -34.02889 -32.11214 -31.68312 -31.34934 -29.74493 -27.10874 -24.96153 -24.14451 -23.10890 -22.75897 -21.03233 -20.56842 -20.34479 -18.86942 -17.89541 -17.27303 -16.93978 -16.54814 -16.40403 -16.23871 -15.80219 -15.37360 -15.03457 -14.86981 -14.48787 -14.46957 -14.21496 -14.04864 -13.73538 -13.37306 -13.07437 -12.78634 -12.31900 -12.16057 -12.11388 -12.02783 -11.83866 -11.51786 -10.97343 -10.78293 -10.67211 -10.59311 -10.44096 -10.42725 -10.19602 -9.75531 -9.65587 -9.50697 -9.42328 -9.33862 -9.19414 -8.39937 -6.04809 -4.08048 0.43275 0.94237 2.16225 2.27562 2.50166 3.02400 3.31576 3.35985 3.38470 3.47565 3.85714 4.23348 4.40000 4.41867 4.51552 4.58273 4.66891 4.71948 4.94198 5.03609 5.06106 5.16156 5.24538 5.31060 5.37448 5.54009 5.55159 5.57545 5.85561 5.90862 5.95756 5.97673 6.01393 6.40585 6.44071 6.50781 6.77417 6.94877 7.09893 7.30319 7.57951 7.68935 7.72200 7.81509 7.93131 8.33966 8.97867 9.56228 11.06553 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.029720 B = 0.001963 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.912954 B =14261.841812 C =14648.627770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.070 3.930 12 O -0.351 6.351 13 C 0.467 3.533 14 O -0.505 6.505 15 C 0.157 3.843 16 H 0.140 0.860 17 C 0.070 3.930 18 O -0.568 6.568 19 N -0.704 5.704 20 C 0.565 3.435 21 O -0.537 6.537 22 C -0.134 4.134 23 C -0.082 4.082 24 C -0.127 4.127 25 C -0.093 4.093 26 C -0.130 4.130 27 C -0.059 4.059 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.020 0.980 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.386 0.614 38 H 0.413 0.587 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -29.755 1.745 30.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.003 4.003 12 O -0.266 6.266 13 C 0.309 3.691 14 O -0.393 6.393 15 C 0.050 3.950 16 H 0.157 0.843 17 C -0.009 4.009 18 O -0.375 6.375 19 N -0.359 5.359 20 C 0.354 3.646 21 O -0.415 6.415 22 C -0.137 4.137 23 C -0.101 4.101 24 C -0.145 4.145 25 C -0.112 4.112 26 C -0.148 4.148 27 C -0.077 4.077 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.234 0.766 38 H 0.252 0.748 39 H 0.147 0.853 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.148 0.852 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.504 -29.602 0.980 29.824 hybrid contribution 0.179 1.043 0.575 1.205 sum 3.683 -28.558 1.555 28.837 Atomic orbital electron populations 1.69955 1.06084 1.26892 1.50392 1.25032 0.94893 0.99374 0.95174 0.86594 0.79521 0.82853 0.78663 1.20182 1.21259 1.20183 1.21127 0.93087 0.90661 1.51200 0.92460 1.19050 0.93826 0.90697 0.97705 1.21779 0.99975 0.90852 1.02034 1.23570 0.91157 0.83250 1.02312 1.86452 1.42694 1.14658 1.82816 1.23036 0.88181 0.85239 0.72676 1.90640 1.16644 1.86611 1.45413 1.20506 0.91821 0.81573 1.01070 0.84277 1.22507 0.91954 1.02130 0.84338 1.86486 1.37087 1.97495 1.16402 1.45607 1.19456 1.07498 1.63330 1.18281 0.86364 0.83108 0.76894 1.90783 1.18586 1.85458 1.46708 1.19839 0.95214 0.93901 1.04787 1.21425 0.92995 0.98924 0.96729 1.21156 1.00356 0.92573 1.00426 1.21423 0.95391 0.98245 0.96107 1.21181 0.94650 0.98313 1.00669 1.21295 1.00190 0.90975 0.95280 0.92822 0.96222 0.96208 0.92063 0.92078 0.91404 0.91273 0.91555 0.90650 0.76642 0.74801 0.85298 0.85173 0.85474 0.85206 0.84519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.11 -2.23 5.53 -26.73 -0.15 -2.38 16 11 C 0.07 1.28 5.47 37.16 0.20 1.48 16 12 O -0.35 -5.72 10.15 -39.24 -0.40 -6.12 16 13 C 0.47 7.06 6.84 36.01 0.25 7.30 16 14 O -0.51 -8.70 15.59 -18.75 -0.29 -8.99 16 15 C 0.16 1.86 2.88 -69.08 -0.20 1.66 16 16 H 0.14 1.54 7.58 -51.93 -0.39 1.14 16 17 C 0.07 0.69 6.78 37.16 0.25 0.95 16 18 O -0.57 -5.92 13.09 -35.23 -0.46 -6.38 16 19 N -0.70 -7.95 4.85 -55.87 -0.27 -8.22 16 20 C 0.57 6.56 7.74 -12.33 -0.10 6.47 16 21 O -0.54 -7.44 16.01 5.32 0.09 -7.36 16 22 C -0.13 -1.31 5.87 -104.96 -0.62 -1.93 16 23 C -0.08 -0.67 9.54 -39.18 -0.37 -1.05 16 24 C -0.13 -0.85 10.03 -39.64 -0.40 -1.25 16 25 C -0.09 -0.56 10.04 -39.49 -0.40 -0.96 16 26 C -0.13 -0.86 10.03 -39.64 -0.40 -1.26 16 27 C -0.06 -0.51 9.60 -39.19 -0.38 -0.88 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 34 H 0.07 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.39 2.27 9.12 45.56 0.42 2.69 16 38 H 0.41 4.52 5.83 -40.82 -0.24 4.28 16 39 H 0.13 0.94 6.41 -52.49 -0.34 0.60 16 40 H 0.13 0.61 8.06 -52.48 -0.42 0.18 16 41 H 0.13 0.46 8.06 -52.48 -0.42 0.04 16 42 H 0.13 0.56 8.06 -52.48 -0.42 0.13 16 43 H 0.14 1.15 7.65 -52.49 -0.40 0.75 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -34.42 375.65 -7.95 -42.38 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.14 Total: 3.34 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -2.85 Total: -4.79 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.47 Total: -34.20 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -1.07 Total: -28.85 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.42 -7.95 -42.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000920537974.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.197 kcal (2) G-P(sol) polarization free energy of solvation -34.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds