Wall clock time and date at job start Tue Mar 31 2020 13:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.32346 * 120.48663 * 2 1 4 4 C 1.31750 * 120.92966 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.02933 * 179.97438 * 4 3 2 6 6 C 1.52991 * 117.50039 * 188.74898 * 5 4 3 7 7 C 1.52991 * 117.50106 * 120.08801 * 5 4 3 8 8 N 1.31825 * 121.94629 * 0.02562 * 4 3 2 9 9 C 1.32346 * 120.86346 * 359.70180 * 8 4 3 10 10 Cl 1.73604 * 120.50635 * 180.31122 * 9 8 4 11 11 C 1.39122 * 120.48697 * 179.97438 * 2 1 3 12 12 N 1.39818 * 120.87637 * 0.02562 * 11 2 1 13 13 C 1.46901 * 110.99968 * 119.99964 * 12 11 2 14 14 H 1.09002 * 109.41236 * 35.14036 * 13 12 11 15 15 C 1.52954 * 109.41369 * 154.99927 * 13 12 11 16 16 C 1.53227 * 109.40685 * 183.70153 * 15 13 12 17 17 C 1.51272 * 108.53738 * 305.37624 * 16 15 13 18 18 C 1.37878 * 120.84869 * 231.32787 * 17 16 15 19 19 N 1.31515 * 119.99976 * 359.97438 * 18 17 16 20 20 Si 1.86800 * 119.99956 * 180.02562 * 18 17 16 21 21 H 1.48497 * 109.47242 * 59.99377 * 20 18 17 22 22 H 1.48503 * 109.46895 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.46823 * 299.99296 * 20 18 17 24 24 C 1.51266 * 118.30195 * 51.34086 * 17 16 15 25 25 C 1.52964 * 109.41224 * 275.35378 * 13 12 11 26 26 H 1.09004 * 109.47206 * 270.02026 * 1 2 3 27 27 H 1.09002 * 109.47201 * 30.01834 * 1 2 3 28 28 H 1.09000 * 109.47252 * 150.02255 * 1 2 3 29 29 H 1.09000 * 115.54636 * 334.41581 * 5 4 3 30 30 H 1.08997 * 117.50020 * 0.02562 * 6 5 4 31 31 H 1.09001 * 117.50007 * 145.02050 * 6 5 4 32 32 H 1.09001 * 117.50038 * 214.98246 * 7 5 4 33 33 H 1.09007 * 117.50047 * 359.97438 * 7 5 4 34 34 H 1.00901 * 110.99821 * 356.04639 * 12 11 2 35 35 H 1.08993 * 109.48393 * 303.68432 * 15 13 12 36 36 H 1.08998 * 109.48187 * 63.72401 * 15 13 12 37 37 H 1.09001 * 109.62593 * 65.08730 * 16 15 13 38 38 H 1.08999 * 109.62687 * 185.46590 * 16 15 13 39 39 H 0.96997 * 120.00413 * 180.02562 * 19 18 17 40 40 H 1.09005 * 109.62331 * 68.37055 * 24 17 16 41 41 H 1.08996 * 109.62573 * 188.93863 * 24 17 16 42 42 H 1.09001 * 109.47821 * 296.27258 * 25 13 12 43 43 H 1.08992 * 109.48280 * 56.31582 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1405 0.0000 4 6 3.4959 1.1507 0.0005 5 6 4.2169 2.4740 -0.0001 6 6 5.7328 2.4524 -0.2059 7 6 5.1519 2.7696 1.1742 8 7 4.2020 0.0375 0.0005 9 6 3.6064 -1.1443 0.0060 10 17 4.5455 -2.6044 0.0141 11 6 2.2128 -1.1989 0.0005 12 7 1.5427 -2.4260 0.0005 13 6 1.8927 -3.2170 -1.1869 14 1 2.9371 -3.0410 -1.4444 15 6 1.6864 -4.7026 -0.8871 16 6 2.1387 -5.5329 -2.0928 17 6 1.4064 -5.0371 -3.3201 18 6 0.7346 -5.9141 -4.1450 19 7 0.7253 -7.2000 -3.8693 20 14 -0.1613 -5.2761 -5.6549 21 1 0.8073 -4.6044 -6.5581 22 1 -0.7982 -6.4116 -6.3692 23 1 -1.2047 -4.3052 -5.2378 24 6 1.4303 -3.5545 -3.6194 25 6 1.0037 -2.7959 -2.3583 26 1 -0.3634 0.0004 1.0277 27 1 -0.3634 0.8898 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 3.6631 3.3109 -0.4256 30 1 6.2086 1.4812 -0.3413 31 1 6.1764 3.2754 -0.7664 32 1 5.2135 3.8011 1.5213 33 1 5.2452 2.0071 1.9476 34 1 0.5446 -2.2930 0.0651 35 1 2.2737 -4.9819 -0.0124 36 1 0.6307 -4.8908 -0.6915 37 1 3.2130 -5.4162 -2.2355 38 1 1.9041 -6.5836 -1.9225 39 1 0.2530 -7.8171 -4.4498 40 1 2.4391 -3.2546 -3.9034 41 1 0.7376 -3.3337 -4.4314 42 1 -0.0358 -3.0293 -2.1279 43 1 1.1073 -1.7240 -2.5263 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157054998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:23:52 Heat of formation + Delta-G solvation = 38.474324 kcal Electronic energy + Delta-G solvation = -25220.029576 eV Core-core repulsion = 21711.490997 eV Total energy + Delta-G solvation = -3508.538579 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.53035 -39.74285 -38.10786 -37.86547 -36.35217 -35.18621 -33.85103 -31.77712 -31.33103 -29.62298 -28.40087 -25.47513 -24.62071 -23.54506 -23.23451 -23.13225 -21.78805 -21.35379 -19.39142 -18.22080 -17.94677 -17.42805 -16.72072 -16.43624 -16.21479 -15.88734 -15.46478 -15.00363 -14.76358 -14.45988 -14.36595 -14.19483 -14.05471 -13.70425 -13.48489 -13.37342 -13.17618 -12.89221 -12.82362 -12.67120 -12.58486 -12.36679 -12.21363 -12.01135 -11.83556 -11.66885 -11.43994 -11.37674 -11.21307 -11.16814 -10.82707 -10.58238 -10.54174 -10.37897 -9.08055 -8.18000 -6.12687 -0.37964 -0.25537 0.56529 1.37563 1.39902 1.47199 2.25417 2.38903 2.66576 2.75895 2.91003 3.10035 3.13348 3.46864 3.66648 3.90951 3.94085 3.98142 4.10344 4.12546 4.31046 4.42621 4.58228 4.64345 4.65423 4.77686 4.79961 4.88506 4.94795 4.98871 5.00328 5.01963 5.12204 5.15919 5.23447 5.31654 5.33166 5.49695 5.57049 5.62041 5.74936 5.80032 5.88380 6.15918 6.34876 6.87499 6.93463 7.45415 8.92856 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.019079 B = 0.003751 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.213345 B = 7463.766859 C = 7848.194628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.142 3.858 3 N -0.498 5.498 4 C 0.322 3.678 5 C -0.111 4.111 6 C -0.151 4.151 7 C -0.143 4.143 8 N -0.508 5.508 9 C 0.181 3.819 10 Cl -0.006 7.006 11 C 0.031 3.969 12 N -0.609 5.609 13 C 0.099 3.901 14 H 0.075 0.925 15 C -0.080 4.080 16 C 0.010 3.990 17 C -0.498 4.498 18 C 0.026 3.974 19 N -0.928 5.928 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.295 1.295 23 H -0.260 1.260 24 C -0.009 4.009 25 C -0.125 4.125 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.144 0.856 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.081 0.919 34 H 0.371 0.629 35 H 0.048 0.952 36 H 0.049 0.951 37 H -0.007 1.007 38 H 0.028 0.972 39 H 0.263 0.737 40 H 0.012 0.988 41 H 0.029 0.971 42 H 0.066 0.934 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 19.514 9.538 21.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.009 4.009 3 N -0.212 5.212 4 C 0.055 3.945 5 C -0.131 4.131 6 C -0.188 4.188 7 C -0.181 4.181 8 N -0.225 5.225 9 C 0.005 3.995 10 Cl 0.022 6.978 11 C -0.076 4.076 12 N -0.234 5.234 13 C -0.007 4.007 14 H 0.093 0.907 15 C -0.119 4.119 16 C -0.028 4.028 17 C -0.518 4.518 18 C -0.173 4.173 19 N -0.568 5.568 20 Si 0.767 3.233 21 H -0.197 1.197 22 H -0.221 1.221 23 H -0.185 1.185 24 C -0.047 4.047 25 C -0.164 4.164 26 H 0.129 0.871 27 H 0.119 0.881 28 H 0.106 0.894 29 H 0.162 0.838 30 H 0.108 0.892 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.100 0.900 34 H 0.198 0.802 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.011 0.989 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.031 0.969 41 H 0.047 0.953 42 H 0.084 0.916 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.326 19.644 9.881 22.239 hybrid contribution -1.037 -1.187 -1.474 2.158 sum 2.289 18.457 8.407 20.410 Atomic orbital electron populations 1.20903 0.84602 1.05286 1.05549 1.22450 0.99307 0.85962 0.93165 1.67913 1.09310 1.29734 1.14276 1.22462 0.86198 0.92658 0.93180 1.20748 0.92922 0.91374 1.08053 1.23078 0.92012 1.04150 0.99599 1.23067 1.00154 1.03831 0.91084 1.67405 1.42185 0.97330 1.15617 1.21888 0.88262 0.89403 0.99922 1.98426 1.73261 1.30322 1.95742 1.20177 0.92682 0.92746 1.02005 1.57706 1.14280 1.11959 1.39470 1.21722 0.99959 0.93374 0.85602 0.90675 1.21358 1.00194 0.92813 0.97489 1.19297 0.94008 0.96419 0.93073 1.20549 1.30942 0.91396 1.08882 1.25565 0.97113 0.94769 0.99850 1.69954 1.44152 1.03237 1.39460 0.85849 0.79498 0.77663 0.80307 1.19734 1.22118 1.18493 1.19558 0.96242 0.94652 0.94263 1.22147 0.99901 0.97563 0.96812 0.87144 0.88139 0.89376 0.83791 0.89199 0.85687 0.85174 0.90009 0.80249 0.93326 0.93267 0.98856 0.95354 0.92747 0.96916 0.95264 0.91558 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.63 71.23 0.69 -1.13 16 2 C 0.14 3.61 6.84 42.69 0.29 3.90 16 3 N -0.50 -13.34 10.26 -175.63 -1.80 -15.14 16 4 C 0.32 8.77 7.31 138.76 1.01 9.78 16 5 C -0.11 -2.21 6.23 -11.54 -0.07 -2.28 16 6 C -0.15 -2.57 10.01 30.61 0.31 -2.27 16 7 C -0.14 -2.27 10.24 30.61 0.31 -1.95 16 8 N -0.51 -15.47 9.33 -178.30 -1.66 -17.13 16 9 C 0.18 5.75 6.99 84.91 0.59 6.34 16 10 Cl -0.01 -0.20 26.03 -2.72 -0.07 -0.27 16 11 C 0.03 0.89 5.50 38.38 0.21 1.11 16 12 N -0.61 -17.63 6.11 -317.50 -1.94 -19.57 16 13 C 0.10 3.51 1.71 44.89 0.08 3.59 16 14 H 0.08 2.87 5.01 -2.39 -0.01 2.86 16 15 C -0.08 -3.23 5.54 30.66 0.17 -3.06 16 16 C 0.01 0.50 5.96 30.11 0.18 0.68 16 17 C -0.50 -25.56 5.51 -16.17 -0.09 -25.65 16 18 C 0.03 1.38 5.46 84.65 0.46 1.85 16 19 N -0.93 -53.74 12.73 21.45 0.27 -53.47 16 20 Si 0.94 42.54 26.80 68.60 1.84 44.38 16 21 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 C -0.01 -0.40 5.59 30.10 0.17 -0.23 16 25 C -0.13 -4.52 5.18 30.66 0.16 -4.36 16 26 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.10 1.53 8.14 -2.39 -0.02 1.52 16 28 H 0.09 1.42 6.52 -2.39 -0.02 1.41 16 29 H 0.14 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.09 1.94 7.53 -2.39 -0.02 1.92 16 31 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.37 8.97 5.93 -89.69 -0.53 8.44 16 35 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 37 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.03 1.55 7.08 -2.39 -0.02 1.54 16 39 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 40 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 41 H 0.03 1.25 5.17 -2.39 -0.01 1.24 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.05 1.53 7.95 -2.39 -0.02 1.51 16 Total: -1.00 -62.31 353.37 1.62 -60.69 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.51 Total: 14.18 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.47 Total: -13.68 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -5.13 Total: -105.31 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.84 Total: 44.38 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.07 Total: -0.27 kcal Total: -62.31 1.62 -60.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157054998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.165 kcal (2) G-P(sol) polarization free energy of solvation -62.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds