Wall clock time and date at job start Tue Mar 31 2020 12:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30726 * 1 3 3 Si 1.86801 * 120.00067 * 2 1 4 4 H 1.48497 * 109.46897 * 274.65795 * 3 2 1 5 5 H 1.48503 * 109.46948 * 34.65575 * 3 2 1 6 6 H 1.48494 * 109.47055 * 154.65811 * 3 2 1 7 7 C 1.40058 * 119.99973 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99795 * 162.17414 * 7 2 1 9 9 C 1.41275 * 120.00068 * 342.18298 * 7 2 1 10 10 C 1.40715 * 120.15680 * 335.19609 * 9 7 2 11 11 N 1.31899 * 119.92994 * 179.97438 * 10 9 7 12 12 C 1.32163 * 120.27177 * 359.73218 * 11 10 9 13 13 C 1.39911 * 120.31708 * 0.52806 * 12 11 10 14 14 N 1.38833 * 119.96745 * 179.74772 * 13 12 11 15 15 C 1.46504 * 120.00064 * 359.72725 * 14 13 12 16 16 C 1.50693 * 109.47481 * 179.97438 * 15 14 13 17 17 C 1.38141 * 120.03411 * 259.72466 * 16 15 14 18 18 C 1.38262 * 120.06846 * 180.25499 * 17 16 15 19 19 C 1.38299 * 120.13221 * 0.03727 * 18 17 16 20 20 C 1.38108 * 120.06800 * 359.95992 * 19 18 17 21 21 C 1.38817 * 120.03327 * 79.99546 * 16 15 14 22 22 N 1.40188 * 120.06972 * 359.70450 * 21 16 15 23 23 C 1.35215 * 126.05616 * 179.97438 * 22 21 16 24 24 C 1.35319 * 107.71729 * 179.97438 * 23 22 21 25 25 C 1.39930 * 107.92611 * 0.02562 * 24 23 22 26 26 N 1.30871 * 108.24209 * 359.71044 * 25 24 23 27 27 N 1.32263 * 120.06747 * 359.47239 * 13 12 11 28 28 H 0.97001 * 120.00117 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.03608 * 359.96264 * 10 9 7 30 30 H 1.07998 * 119.84124 * 180.25201 * 12 11 10 31 31 H 0.96997 * 120.00470 * 179.71928 * 14 13 12 32 32 H 1.08993 * 109.47076 * 59.99180 * 15 14 13 33 33 H 1.09002 * 109.46524 * 299.99505 * 15 14 13 34 34 H 1.07998 * 119.96374 * 0.25015 * 17 16 15 35 35 H 1.07999 * 119.93248 * 180.02562 * 18 17 16 36 36 H 1.07998 * 119.97002 * 179.97438 * 19 18 17 37 37 H 1.07995 * 120.03082 * 180.02562 * 20 19 18 38 38 H 1.08007 * 126.14612 * 359.96823 * 23 22 21 39 39 H 1.07992 * 126.03906 * 180.02562 * 24 23 22 40 40 H 1.07998 * 125.87577 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6177 0.0000 4 1 2.3903 2.1032 -1.3954 5 1 1.4914 2.6222 0.7962 6 1 3.5845 1.4137 0.5992 7 6 2.0075 -1.2129 0.0005 8 1 3.0487 -1.2355 -0.2858 9 6 1.3520 -2.4069 0.3754 10 6 0.2257 -2.3605 1.2176 11 7 -0.3832 -3.4780 1.5644 12 6 0.0569 -4.6422 1.1198 13 6 1.1790 -4.7014 0.2863 14 7 1.6382 -5.9287 -0.1723 15 6 0.9514 -7.1614 0.2214 16 6 1.6427 -8.3441 -0.4065 17 6 1.1183 -8.9280 -1.5433 18 6 1.7491 -10.0165 -2.1169 19 6 2.9059 -10.5245 -1.5544 20 6 3.4350 -9.9450 -0.4179 21 6 2.8039 -8.8515 0.1602 22 7 3.3389 -8.2608 1.3135 23 6 4.4574 -8.6541 1.9635 24 6 4.6305 -7.8288 3.0218 25 6 3.5834 -6.9005 3.0198 26 7 2.8124 -7.1549 1.9934 27 7 1.7995 -3.5889 -0.0696 28 1 -0.4850 0.8400 -0.0004 29 1 -0.1397 -1.4109 1.5799 30 1 -0.4495 -5.5525 1.4049 31 1 2.4137 -5.9700 -0.7535 32 1 -0.0840 -7.1244 -0.1170 33 1 0.9757 -7.2600 1.3067 34 1 0.2147 -8.5340 -1.9844 35 1 1.3374 -10.4711 -3.0059 36 1 3.3962 -11.3750 -2.0044 37 1 4.3386 -10.3419 0.0206 38 1 5.0978 -9.4789 1.6876 39 1 5.4346 -7.8778 3.7409 40 1 3.4391 -6.1077 3.7388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158117003.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:11 Heat of formation + Delta-G solvation = 146.901701 kcal Electronic energy + Delta-G solvation = -25751.026953 eV Core-core repulsion = 22146.082644 eV Total energy + Delta-G solvation = -3604.944308 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.128 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.54487 -40.91210 -40.13519 -37.11091 -35.75571 -34.50026 -34.19133 -32.73892 -31.06954 -30.54320 -29.80965 -27.85981 -26.84850 -24.46296 -24.14991 -23.51625 -22.81175 -21.60497 -21.34845 -19.56653 -19.09495 -18.18588 -17.57060 -16.86680 -16.68279 -16.61910 -16.58732 -16.13418 -15.88426 -15.37225 -15.26417 -14.91649 -14.77559 -14.48732 -14.14217 -13.83750 -13.67382 -13.61776 -13.41393 -13.09238 -13.01147 -12.69488 -12.44744 -12.08703 -11.99844 -11.85749 -11.69547 -11.41087 -11.31377 -11.14123 -10.35416 -10.06332 -9.95995 -9.28309 -9.02211 -8.83320 -8.40600 -6.64682 -0.16527 0.22094 0.77403 1.16479 1.26385 1.40163 1.47557 1.52487 1.59099 1.84901 2.18562 2.43890 2.67447 2.91388 3.45939 3.61417 3.79607 3.85984 3.93210 4.10814 4.21673 4.28395 4.32731 4.40448 4.43397 4.55324 4.63914 4.69775 4.77925 4.83614 5.00371 5.03203 5.04212 5.07324 5.24640 5.26228 5.42553 5.48280 5.65922 5.75594 5.81951 6.09105 6.25754 6.32970 6.47621 6.64536 6.68370 6.91973 7.41872 7.90587 8.19153 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.003302 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.314020 B = 8477.345901 C = 9097.131847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.041 3.959 3 Si 1.003 2.997 4 H -0.258 1.258 5 H -0.257 1.257 6 H -0.257 1.257 7 C -0.458 4.458 8 H 0.082 0.918 9 C 0.244 3.756 10 C -0.076 4.076 11 N -0.429 5.429 12 C -0.159 4.159 13 C 0.390 3.610 14 N -0.696 5.696 15 C 0.182 3.818 16 C -0.128 4.128 17 C -0.087 4.087 18 C -0.128 4.128 19 C -0.078 4.078 20 C -0.143 4.143 21 C 0.152 3.848 22 N -0.332 5.332 23 C 0.048 3.952 24 C -0.261 4.261 25 C 0.026 3.974 26 N -0.303 5.303 27 N -0.617 5.617 28 H 0.299 0.701 29 H 0.144 0.856 30 H 0.140 0.860 31 H 0.387 0.613 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.136 0.864 35 H 0.158 0.842 36 H 0.171 0.829 37 H 0.159 0.841 38 H 0.217 0.783 39 H 0.178 0.822 40 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.786 -20.539 -1.307 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.179 4.179 3 Si 0.821 3.179 4 H -0.182 1.182 5 H -0.181 1.181 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.100 0.900 9 C 0.116 3.884 10 C -0.245 4.245 11 N -0.141 5.141 12 C -0.321 4.321 13 C 0.148 3.852 14 N -0.328 5.328 15 C 0.058 3.942 16 C -0.131 4.131 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.097 4.097 20 C -0.163 4.163 21 C 0.059 3.941 22 N -0.108 5.108 23 C -0.093 4.093 24 C -0.289 4.289 25 C -0.161 4.161 26 N -0.122 5.122 27 N -0.347 5.347 28 H 0.110 0.890 29 H 0.161 0.839 30 H 0.157 0.843 31 H 0.220 0.780 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.154 0.846 35 H 0.176 0.824 36 H 0.188 0.812 37 H 0.176 0.824 38 H 0.234 0.766 39 H 0.196 0.804 40 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.322 -20.292 -1.859 21.653 hybrid contribution 0.881 0.810 0.467 1.285 sum 8.203 -19.482 -1.392 21.185 Atomic orbital electron populations 1.69809 1.09435 1.31901 1.32087 1.27006 0.95585 1.04967 0.90296 0.84898 0.78932 0.74250 0.79787 1.18237 1.18051 1.18061 1.19592 0.98466 0.90569 1.40521 0.89992 1.19369 0.90404 0.90743 0.87907 1.23216 1.00674 0.95551 1.05062 1.67625 1.28145 0.98997 1.19299 1.22238 1.02531 0.95905 1.11417 1.19328 0.89839 0.86979 0.89097 1.43927 1.33793 1.01074 1.54056 1.20194 0.93841 0.80179 1.00010 1.19632 0.96289 0.98756 0.98395 1.21243 1.00306 0.95949 0.93061 1.21585 0.96078 0.95821 1.01117 1.21468 0.95049 0.99620 0.93518 1.21172 1.01982 0.94919 0.98237 1.17884 0.94758 0.95128 0.86335 1.46191 1.20437 1.23246 1.20959 1.23269 0.90288 1.01857 0.93905 1.21918 1.03862 0.99451 1.03648 1.24498 0.94518 1.00302 0.96737 1.77867 1.22876 1.02314 1.09096 1.68474 1.36857 0.97989 1.31404 0.88959 0.83924 0.84251 0.78001 0.92718 0.90435 0.84568 0.82399 0.81194 0.82390 0.76617 0.80446 0.79992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.59 10.97 21.84 0.24 -42.35 16 2 C 0.04 2.06 5.13 85.30 0.44 2.50 16 3 Si 1.00 37.79 29.60 68.60 2.03 39.82 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 5 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 6 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 7 C -0.46 -26.16 9.28 23.46 0.22 -25.94 16 8 H 0.08 4.60 7.91 -2.91 -0.02 4.57 16 9 C 0.24 14.75 6.41 40.17 0.26 15.01 16 10 C -0.08 -4.54 9.88 85.29 0.84 -3.70 16 11 N -0.43 -24.64 10.47 -192.24 -2.01 -26.65 16 12 C -0.16 -8.39 10.50 85.05 0.89 -7.49 16 13 C 0.39 20.17 7.66 133.35 1.02 21.19 16 14 N -0.70 -28.93 4.88 -348.38 -1.70 -30.63 16 15 C 0.18 6.21 4.04 85.63 0.35 6.56 16 16 C -0.13 -3.44 5.26 -19.75 -0.10 -3.54 16 17 C -0.09 -1.80 9.66 22.25 0.22 -1.59 16 18 C -0.13 -1.81 10.04 22.29 0.22 -1.58 16 19 C -0.08 -0.92 10.04 22.25 0.22 -0.70 16 20 C -0.14 -2.23 9.46 22.39 0.21 -2.02 16 21 C 0.15 3.70 6.67 38.09 0.25 3.96 16 22 N -0.33 -9.07 3.80 -187.76 -0.71 -9.79 16 23 C 0.05 0.98 10.80 83.50 0.90 1.88 16 24 C -0.26 -5.81 10.81 22.01 0.24 -5.57 16 25 C 0.03 0.79 12.03 85.25 1.03 1.81 16 26 N -0.30 -10.45 8.01 -56.97 -0.46 -10.90 16 27 N -0.62 -35.88 10.49 -186.01 -1.95 -37.83 16 28 H 0.30 13.89 8.29 -92.71 -0.77 13.12 16 29 H 0.14 8.60 6.17 -2.91 -0.02 8.59 16 30 H 0.14 6.58 6.70 -2.91 -0.02 6.56 16 31 H 0.39 16.16 8.59 -92.71 -0.80 15.36 16 32 H 0.05 1.83 7.78 -2.39 -0.02 1.81 16 33 H 0.08 2.92 5.61 -2.39 -0.01 2.91 16 34 H 0.14 2.65 8.03 -2.91 -0.02 2.63 16 35 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 36 H 0.17 0.74 8.06 -2.91 -0.02 0.71 16 37 H 0.16 1.46 6.74 -2.91 -0.02 1.44 16 38 H 0.22 2.16 7.04 -2.91 -0.02 2.14 16 39 H 0.18 2.76 8.06 -2.91 -0.02 2.74 16 40 H 0.18 5.21 8.06 -2.91 -0.02 5.19 16 Total: -1.00 -77.11 342.31 2.95 -74.16 By element: Atomic # 1 Polarization: 43.09 SS G_CDS: 0.31 Total: 43.40 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 7.20 Total: 0.78 kcal Atomic # 7 Polarization: -151.56 SS G_CDS: -6.60 Total: -158.16 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 2.03 Total: 39.82 kcal Total: -77.11 2.95 -74.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158117003.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.065 kcal (2) G-P(sol) polarization free energy of solvation -77.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 146.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds