Wall clock time and date at job start Tue Mar 31 2020 13:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47297 * 2 1 4 4 C 1.52995 * 109.47009 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46966 * 183.52154 * 4 3 2 6 6 C 1.46898 * 111.00152 * 304.17356 * 5 4 3 7 7 C 1.50700 * 109.47356 * 293.95593 * 6 5 4 8 8 H 1.08005 * 119.99637 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99974 * 180.02562 * 7 6 5 10 10 N 1.31508 * 119.99842 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 119.99944 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46933 * 90.00322 * 11 9 7 13 13 H 1.48505 * 109.47157 * 209.99935 * 11 9 7 14 14 H 1.48499 * 109.47485 * 330.00333 * 11 9 7 15 15 C 1.46897 * 110.99796 * 68.13102 * 5 4 3 16 16 C 1.50700 * 109.47537 * 76.17708 * 15 5 4 17 17 C 1.35076 * 125.68298 * 94.79534 * 16 15 5 18 18 N 1.36906 * 107.17726 * 179.84544 * 17 16 15 19 19 C 1.36492 * 132.55661 * 180.11006 * 18 17 16 20 20 C 1.34911 * 120.63648 * 180.35659 * 19 18 17 21 21 C 1.40583 * 120.27942 * 359.97438 * 20 19 18 22 22 Cl 1.73608 * 120.17018 * 179.97438 * 21 20 19 23 23 C 1.36162 * 119.66399 * 359.96085 * 21 20 19 24 24 C 1.37088 * 106.99284 * 0.41428 * 18 17 16 25 25 N 1.32579 * 108.03159 * 359.74280 * 24 18 17 26 26 H 1.09000 * 109.46960 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.46728 * 299.99730 * 1 2 3 28 28 H 1.08996 * 109.46924 * 60.00187 * 1 2 3 29 29 H 1.09003 * 109.46535 * 239.99828 * 2 1 3 30 30 H 1.08995 * 109.47199 * 120.00545 * 2 1 3 31 31 H 1.08996 * 109.47018 * 59.99895 * 3 2 1 32 32 H 1.09005 * 109.46792 * 299.99965 * 3 2 1 33 33 H 1.09005 * 109.47439 * 63.52364 * 4 3 2 34 34 H 1.08997 * 109.47155 * 303.51940 * 4 3 2 35 35 H 1.09002 * 109.46810 * 53.95407 * 6 5 4 36 36 H 1.09000 * 109.47326 * 173.94712 * 6 5 4 37 37 H 0.97000 * 120.00519 * 179.97438 * 10 9 7 38 38 H 1.09005 * 109.47083 * 196.18008 * 15 5 4 39 39 H 1.08999 * 109.47154 * 316.17451 * 15 5 4 40 40 H 1.07995 * 126.40682 * 0.02562 * 17 16 15 41 41 H 1.08003 * 119.68140 * 0.33955 * 19 18 17 42 42 H 1.07994 * 119.86292 * 179.97438 * 20 19 18 43 43 H 1.08003 * 120.34257 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0598 2.8248 0.0844 6 6 3.5086 3.6464 -1.0014 7 6 4.0434 3.1572 -2.3227 8 1 4.7250 2.3200 -2.3527 9 6 3.6634 3.7792 -3.4931 10 7 4.1305 3.3526 -4.6460 11 14 2.4851 5.2277 -3.4410 12 1 3.2573 6.4896 -3.3128 13 1 1.6863 5.2612 -4.6925 14 1 1.5749 5.0838 -2.2765 15 6 3.7542 3.4117 1.3959 16 6 4.7087 2.8647 2.4259 17 6 5.8594 3.4500 2.8232 18 7 6.4218 2.6355 3.7689 19 6 7.5689 2.7281 4.5028 20 6 7.9019 1.7613 5.3829 21 6 7.0683 0.6426 5.5560 22 17 7.5000 -0.6002 6.6888 23 6 5.9205 0.5388 4.8309 24 6 5.5886 1.5567 3.9153 25 7 4.5606 1.7177 3.0936 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.9330 0.9844 -0.9208 34 1 3.9337 0.8748 0.8559 35 1 2.4212 3.5698 -0.9988 36 1 3.7999 4.6863 -0.8540 37 1 3.8630 3.7899 -5.4695 38 1 3.8593 4.4954 1.3424 39 1 2.7319 3.1593 1.6776 40 1 6.2592 4.3868 2.4642 41 1 8.2163 3.5834 4.3776 42 1 8.8127 1.8471 5.9568 43 1 5.2719 -0.3157 4.9555 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233391049.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:29 Heat of formation + Delta-G solvation = 65.346485 kcal Electronic energy + Delta-G solvation = -24388.818857 eV Core-core repulsion = 20881.445543 eV Total energy + Delta-G solvation = -3507.373314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.81015 -39.51924 -38.54728 -37.28618 -35.32732 -34.60010 -34.41850 -32.00526 -30.25251 -30.18216 -28.87120 -26.55334 -24.87515 -24.21590 -23.71570 -22.53528 -21.94928 -20.59637 -18.94000 -18.74845 -18.07086 -17.13360 -17.04418 -16.67440 -16.37034 -16.12817 -15.69935 -15.61263 -15.17652 -14.95539 -14.47465 -14.22426 -13.99701 -13.89448 -13.80376 -13.49224 -13.17472 -13.11715 -12.83284 -12.54381 -12.41169 -12.33045 -12.23420 -12.07681 -11.95367 -11.86915 -11.76162 -11.44566 -11.36542 -11.25028 -11.06042 -10.72546 -9.77001 -8.89255 -8.82866 -8.23246 -6.25581 -0.36463 0.15930 0.90139 1.37372 1.39406 1.49774 1.58488 1.78863 2.37040 2.38172 3.10528 3.17820 3.37951 3.54125 3.70687 3.96651 4.02791 4.04524 4.17088 4.26543 4.32787 4.35068 4.48755 4.49905 4.59322 4.73568 4.77644 4.84895 4.87062 4.90651 4.95401 4.98833 5.06778 5.15382 5.18147 5.33452 5.35051 5.44124 5.49115 5.55203 5.61622 6.04867 6.07501 6.38473 6.70908 6.80067 6.87244 7.37303 8.93838 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.015729 B = 0.003069 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.743733 B = 9121.009066 C =10219.124228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.142 4.142 4 C 0.078 3.922 5 N -0.535 5.535 6 C 0.170 3.830 7 C -0.506 4.506 8 H 0.030 0.970 9 C 0.008 3.992 10 N -0.952 5.952 11 Si 0.944 3.056 12 H -0.262 1.262 13 H -0.286 1.286 14 H -0.247 1.247 15 C 0.126 3.874 16 C 0.059 3.941 17 C -0.069 4.069 18 N -0.372 5.372 19 C 0.079 3.921 20 C -0.142 4.142 21 C -0.012 4.012 22 Cl -0.040 7.040 23 C -0.089 4.089 24 C 0.207 3.793 25 N -0.511 5.511 26 H 0.067 0.933 27 H 0.058 0.942 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.040 0.960 34 H 0.069 0.931 35 H 0.000 1.000 36 H 0.033 0.967 37 H 0.265 0.735 38 H 0.100 0.900 39 H 0.049 0.951 40 H 0.212 0.788 41 H 0.211 0.789 42 H 0.194 0.806 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.893 -1.453 25.008 25.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.181 4.181 4 C -0.051 4.051 5 N -0.258 5.258 6 C 0.043 3.957 7 C -0.545 4.545 8 H 0.049 0.951 9 C -0.189 4.189 10 N -0.593 5.593 11 Si 0.768 3.232 12 H -0.187 1.187 13 H -0.212 1.212 14 H -0.171 1.171 15 C -0.002 4.002 16 C -0.073 4.073 17 C -0.200 4.200 18 N -0.044 5.044 19 C -0.043 4.043 20 C -0.163 4.163 21 C -0.045 4.045 22 Cl -0.011 7.011 23 C -0.110 4.110 24 C -0.036 4.036 25 N -0.233 5.233 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.088 0.912 35 H 0.018 0.982 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.067 0.933 40 H 0.228 0.772 41 H 0.227 0.773 42 H 0.211 0.789 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.794 -1.994 24.742 25.280 hybrid contribution -0.540 0.701 -0.617 1.079 sum 4.253 -1.294 24.125 24.531 Atomic orbital electron populations 1.21723 0.94733 1.02142 1.01590 1.21380 0.96775 0.95687 1.01435 1.22049 0.97210 0.98024 1.00788 1.21864 0.92978 0.90053 1.00166 1.61982 1.59710 1.02654 1.01448 1.20029 0.93274 0.93290 0.89111 1.21189 1.26833 1.15745 0.90690 0.95132 1.25812 0.98047 1.00324 0.94712 1.70059 1.46924 1.43702 0.98632 0.85758 0.79549 0.79672 0.78265 1.18712 1.21238 1.17106 1.20443 0.94761 0.98855 0.86154 1.20849 0.96389 0.92093 0.97951 1.22840 0.97615 1.01609 0.97976 1.43076 1.17128 1.17174 1.27052 1.22341 0.87150 1.02495 0.92287 1.21024 1.02535 0.91840 1.00927 1.20663 0.95562 0.92995 0.95267 1.98399 1.92503 1.51660 1.58540 1.20104 0.97971 0.98147 0.94765 1.20891 0.90129 0.91331 1.01294 1.70554 1.23279 1.19067 1.10397 0.91424 0.92302 0.93545 0.93216 0.91644 0.91983 0.93444 0.94104 0.91242 0.98220 0.94879 0.92612 0.88207 0.93291 0.77173 0.77253 0.78908 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.11 -3.67 5.93 30.60 0.18 -3.49 16 3 C -0.14 -5.32 4.48 30.59 0.14 -5.18 16 4 C 0.08 3.27 5.01 86.30 0.43 3.71 16 5 N -0.54 -22.77 4.62 -905.37 -4.18 -26.95 16 6 C 0.17 8.04 3.44 85.56 0.29 8.33 16 7 C -0.51 -29.44 9.12 25.60 0.23 -29.21 16 8 H 0.03 2.02 7.34 -2.91 -0.02 2.00 16 9 C 0.01 0.45 5.47 84.66 0.46 0.91 16 10 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 11 Si 0.94 43.76 27.47 68.60 1.88 45.65 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 14 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 15 C 0.13 4.33 5.43 85.56 0.46 4.79 16 16 C 0.06 1.90 6.12 41.57 0.25 2.16 16 17 C -0.07 -1.80 11.66 83.17 0.97 -0.83 16 18 N -0.37 -8.66 2.95 -352.17 -1.04 -9.70 16 19 C 0.08 1.09 10.94 83.20 0.91 2.01 16 20 C -0.14 -1.72 9.79 22.08 0.22 -1.51 16 21 C -0.01 -0.20 6.33 22.36 0.14 -0.06 16 22 Cl -0.04 -0.58 28.97 -2.72 -0.08 -0.66 16 23 C -0.09 -1.97 9.88 22.43 0.22 -1.74 16 24 C 0.21 5.82 7.81 134.08 1.05 6.87 16 25 N -0.51 -17.28 10.39 -182.42 -1.90 -19.18 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 2.19 6.25 -2.39 -0.01 2.17 16 32 H 0.05 2.01 6.42 -2.38 -0.02 1.99 16 33 H 0.04 1.99 6.98 -2.38 -0.02 1.98 16 34 H 0.07 2.86 6.74 -2.39 -0.02 2.85 16 35 H 0.00 0.01 5.03 -2.39 -0.01 0.00 16 36 H 0.03 1.50 7.25 -2.39 -0.02 1.48 16 37 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 38 H 0.10 2.99 7.73 -2.38 -0.02 2.97 16 39 H 0.05 1.67 6.01 -2.39 -0.01 1.66 16 40 H 0.21 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.21 1.14 8.06 -2.91 -0.02 1.11 16 42 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 43 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -73.85 361.43 2.63 -71.22 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.96 Total: 15.89 kcal Atomic # 6 Polarization: -23.09 SS G_CDS: 6.68 Total: -16.41 kcal Atomic # 7 Polarization: -108.88 SS G_CDS: -6.82 Total: -115.69 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 1.88 Total: 45.65 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.08 Total: -0.66 kcal Total: -73.85 2.63 -71.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233391049.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.568 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds