Wall clock time and date at job start Tue Mar 31 2020 13:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47010 * 2 1 4 4 C 1.53000 * 109.47010 * 179.97438 * 3 2 1 5 5 N 1.46894 * 109.47187 * 179.30002 * 4 3 2 6 6 C 1.46902 * 110.99914 * 287.84548 * 5 4 3 7 7 C 1.50701 * 109.47051 * 299.21675 * 6 5 4 8 8 H 1.08003 * 120.00003 * 4.71821 * 7 6 5 9 9 C 1.37879 * 120.00272 * 184.71391 * 7 6 5 10 10 N 1.31522 * 119.99518 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00449 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46874 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.46824 * 120.00087 * 11 9 7 14 14 H 1.48495 * 109.47464 * 240.00432 * 11 9 7 15 15 C 1.46902 * 110.99851 * 163.89243 * 5 4 3 16 16 C 1.50701 * 109.46768 * 189.99921 * 15 5 4 17 17 C 1.34463 * 126.50952 * 260.02349 * 16 15 5 18 18 N 1.36669 * 109.97379 * 179.97438 * 17 16 15 19 19 H 0.97002 * 125.05287 * 179.73265 * 18 17 16 20 20 C 1.37596 * 109.89320 * 359.97438 * 18 17 16 21 21 C 1.38825 * 134.44721 * 179.97438 * 20 18 17 22 22 N 1.31775 * 120.29348 * 180.02562 * 21 20 18 23 23 C 1.32363 * 122.55040 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 119.35132 * 179.97438 * 23 22 21 25 25 C 1.36772 * 121.29446 * 0.02562 * 23 22 21 26 26 C 1.39808 * 118.69000 * 359.97438 * 25 23 22 27 27 H 1.09002 * 109.46805 * 60.00417 * 1 2 3 28 28 H 1.08999 * 109.47039 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47194 * 300.00350 * 1 2 3 30 30 H 1.08996 * 109.47194 * 239.99650 * 2 1 3 31 31 H 1.09002 * 109.46805 * 119.99583 * 2 1 3 32 32 H 1.08991 * 109.46962 * 59.99713 * 3 2 1 33 33 H 1.09002 * 109.46996 * 299.99466 * 3 2 1 34 34 H 1.08999 * 109.47291 * 59.29436 * 4 3 2 35 35 H 1.09002 * 109.46819 * 299.30090 * 4 3 2 36 36 H 1.09004 * 109.46906 * 59.21559 * 6 5 4 37 37 H 1.09000 * 109.47126 * 179.22040 * 6 5 4 38 38 H 0.96998 * 119.99883 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.47198 * 70.00248 * 15 5 4 40 40 H 1.08992 * 109.47244 * 309.99753 * 15 5 4 41 41 H 1.08001 * 125.01274 * 359.94269 * 17 16 15 42 42 H 1.07995 * 119.85396 * 359.97438 * 21 20 18 43 43 H 1.08000 * 120.65564 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8274 -0.0163 6 6 3.8395 3.4476 -1.3296 7 6 4.5897 2.6736 -2.3828 8 1 5.1092 1.7647 -2.1174 9 6 4.6127 3.1257 -3.6851 10 7 3.9804 4.2328 -4.0081 11 14 5.5432 2.1667 -4.9905 12 1 6.1649 0.9671 -4.3743 13 1 4.6021 1.7429 -6.0581 14 1 6.6018 3.0275 -5.5767 15 6 5.4772 2.8892 0.3641 16 6 5.8786 4.3264 0.5745 17 6 6.5378 5.1089 -0.2980 18 7 6.7257 6.3515 0.2390 19 1 7.1801 7.0862 -0.2023 20 6 6.1793 6.4039 1.5007 21 6 6.0809 7.3855 2.4775 22 7 5.4804 7.1269 3.6216 23 6 4.9508 5.9454 3.8968 24 17 4.1793 5.6955 5.4317 25 6 5.0004 4.9174 2.9961 26 6 5.6255 5.1338 1.7644 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 3.9337 0.9177 -0.8827 35 1 3.9329 0.9397 0.8971 36 1 2.7744 3.4386 -1.5617 37 1 4.1985 4.4766 -1.3103 38 1 3.9969 4.5511 -4.9243 39 1 6.0855 2.4545 -0.4291 40 1 5.6304 2.3303 1.2872 41 1 6.8703 4.8006 -1.2782 42 1 6.4991 8.3651 2.2992 43 1 4.5645 3.9577 3.2313 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235509583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:59 Heat of formation + Delta-G solvation = 32.886593 kcal Electronic energy + Delta-G solvation = -24748.263130 eV Core-core repulsion = 21239.482250 eV Total energy + Delta-G solvation = -3508.780881 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.55112 -39.38373 -38.64762 -37.31917 -35.62118 -34.52529 -33.43535 -31.41858 -30.70782 -29.68577 -28.58017 -26.07902 -24.90117 -24.64080 -23.47907 -22.31169 -21.30809 -20.47012 -19.21419 -18.30811 -17.92942 -16.99578 -16.78576 -16.47433 -16.16269 -16.00778 -15.71232 -15.36087 -15.14186 -14.92420 -14.32032 -14.23070 -14.01390 -13.65848 -13.48411 -13.30711 -13.05088 -12.93242 -12.61751 -12.45246 -12.34148 -12.27771 -12.16835 -11.99203 -11.91928 -11.74960 -11.60532 -11.41579 -11.24322 -10.93277 -10.73380 -10.51507 -9.51723 -8.91554 -8.69196 -8.05274 -6.24055 -0.09050 0.32555 0.94202 1.36894 1.42077 1.50632 1.67903 2.15326 2.41474 2.77430 3.18326 3.47808 3.58284 3.76523 3.92214 3.95248 4.15635 4.24714 4.37465 4.39924 4.47595 4.59298 4.61331 4.67746 4.82197 4.86773 4.90954 4.97105 5.04523 5.14638 5.20169 5.23183 5.34369 5.39701 5.45440 5.47451 5.55549 5.59919 5.63808 5.87161 5.92009 6.18360 6.40147 6.59935 6.70437 6.80165 6.99097 7.46381 8.94985 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.010202 B = 0.004450 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.899824 B = 6290.157974 C = 8526.546887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.103 4.103 4 C 0.061 3.939 5 N -0.540 5.540 6 C 0.209 3.791 7 C -0.539 4.539 8 H 0.057 0.943 9 C 0.020 3.980 10 N -0.924 5.924 11 Si 0.943 3.057 12 H -0.267 1.267 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.136 3.864 16 C -0.164 4.164 17 C 0.090 3.910 18 N -0.562 5.562 19 H 0.436 0.564 20 C 0.031 3.969 21 C 0.138 3.862 22 N -0.487 5.487 23 C 0.114 3.886 24 Cl -0.040 7.040 25 C -0.097 4.097 26 C -0.067 4.067 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.032 0.968 34 H 0.025 0.975 35 H 0.074 0.926 36 H -0.008 1.008 37 H 0.013 0.987 38 H 0.261 0.739 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.179 0.821 42 H 0.197 0.803 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.324 0.461 11.182 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.067 4.067 5 N -0.263 5.263 6 C 0.082 3.918 7 C -0.578 4.578 8 H 0.075 0.925 9 C -0.179 4.179 10 N -0.565 5.565 11 Si 0.770 3.230 12 H -0.191 1.191 13 H -0.215 1.215 14 H -0.204 1.204 15 C 0.008 3.992 16 C -0.171 4.171 17 C -0.040 4.040 18 N -0.166 5.166 19 H 0.277 0.723 20 C -0.081 4.081 21 C -0.030 4.030 22 N -0.198 5.198 23 C -0.042 4.042 24 Cl -0.012 7.012 25 C -0.118 4.118 26 C -0.080 4.080 27 H 0.060 0.940 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.051 0.949 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.010 0.990 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.196 0.804 42 H 0.214 0.786 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.910 1.498 12.150 12.851 hybrid contribution 0.760 -1.039 -2.547 2.853 sum 4.670 0.459 9.603 10.689 Atomic orbital electron populations 1.21735 0.95227 1.02008 1.01503 1.21445 0.96388 0.95692 1.01923 1.21438 0.94990 0.96991 1.00675 1.22006 0.95486 0.89437 0.99766 1.62464 1.16696 1.17201 1.29927 1.19301 0.94133 0.94206 0.84172 1.21942 1.32125 1.09259 0.94485 0.92475 1.25613 0.96289 0.95593 1.00382 1.70086 1.44098 1.23094 1.19187 0.85735 0.78594 0.79190 0.79517 1.19127 1.21475 1.20363 1.20182 0.89070 0.90808 0.99184 1.20113 1.06424 0.97374 0.93181 1.22061 0.99652 0.83820 0.98509 1.41555 1.49601 1.12986 1.12431 0.72321 1.19520 1.02153 0.97283 0.89098 1.22077 0.96773 0.98615 0.85534 1.66891 1.10824 1.21276 1.20791 1.20782 1.02003 0.91464 0.89905 1.98355 1.78937 1.95866 1.28009 1.20875 0.99419 1.00050 0.91485 1.19326 0.99999 0.94015 0.94611 0.93982 0.91437 0.92325 0.92998 0.90745 0.92134 0.94896 0.95645 0.90796 0.99039 0.96884 0.93008 0.94326 0.90439 0.80371 0.78598 0.83732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.91 71.98 0.71 -2.84 16 2 C -0.12 -3.19 5.93 30.60 0.18 -3.01 16 3 C -0.10 -3.53 5.28 30.60 0.16 -3.37 16 4 C 0.06 2.22 4.80 86.30 0.41 2.63 16 5 N -0.54 -21.81 4.66 -905.37 -4.22 -26.03 16 6 C 0.21 10.27 4.79 85.56 0.41 10.68 16 7 C -0.54 -27.36 7.34 25.60 0.19 -27.18 16 8 H 0.06 2.87 5.95 -2.91 -0.02 2.85 16 9 C 0.02 1.07 5.46 84.65 0.46 1.53 16 10 N -0.92 -51.88 13.29 21.45 0.28 -51.60 16 11 Si 0.94 41.22 29.54 68.60 2.03 43.25 16 12 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 13 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 15 C 0.14 4.86 5.31 85.56 0.45 5.31 16 16 C -0.16 -5.61 4.91 -18.71 -0.09 -5.70 16 17 C 0.09 2.80 10.97 83.08 0.91 3.71 16 18 N -0.56 -13.88 6.06 -187.57 -1.14 -15.02 16 19 H 0.44 7.32 8.96 -92.71 -0.83 6.49 16 20 C 0.03 0.85 7.33 39.07 0.29 1.14 16 21 C 0.14 3.41 11.25 84.84 0.95 4.37 16 22 N -0.49 -14.18 10.29 -187.20 -1.93 -16.11 16 23 C 0.11 3.43 7.23 84.27 0.61 4.04 16 24 Cl -0.04 -1.06 29.08 -2.72 -0.08 -1.14 16 25 C -0.10 -3.00 9.87 22.31 0.22 -2.78 16 26 C -0.07 -2.19 6.42 -20.20 -0.13 -2.32 16 27 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 33 H 0.03 1.34 6.73 -2.39 -0.02 1.32 16 34 H 0.03 1.03 6.13 -2.39 -0.01 1.02 16 35 H 0.07 2.29 7.81 -2.39 -0.02 2.27 16 36 H -0.01 -0.47 6.67 -2.38 -0.02 -0.49 16 37 H 0.01 0.70 6.60 -2.39 -0.02 0.68 16 38 H 0.26 13.94 8.31 -92.71 -0.77 13.17 16 39 H 0.04 1.48 6.60 -2.39 -0.02 1.46 16 40 H 0.08 2.45 7.86 -2.39 -0.02 2.43 16 41 H 0.18 5.55 8.06 -2.91 -0.02 5.53 16 42 H 0.20 3.14 8.06 -2.91 -0.02 3.11 16 43 H 0.14 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -62.09 365.68 0.90 -61.19 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.20 Total: 19.24 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 5.74 Total: -13.78 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -6.99 Total: -108.75 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -62.09 0.90 -61.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235509583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.080 kcal (2) G-P(sol) polarization free energy of solvation -62.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds