Wall clock time and date at job start Tue Mar 31 2020 13:47:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47035 * 2 1 4 4 C 1.53000 * 109.47035 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47174 * 180.34882 * 4 3 2 6 6 C 1.46899 * 110.99730 * 302.36099 * 5 4 3 7 7 C 1.50697 * 109.47329 * 294.30074 * 6 5 4 8 8 H 1.08004 * 119.99844 * 356.08608 * 7 6 5 9 9 C 1.37881 * 120.00388 * 176.08292 * 7 6 5 10 10 N 1.31515 * 119.99542 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00135 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47465 * 89.99566 * 11 9 7 13 13 H 1.48502 * 109.47237 * 209.99906 * 11 9 7 14 14 H 1.48506 * 109.47200 * 329.99738 * 11 9 7 15 15 C 1.46898 * 111.00345 * 66.31363 * 5 4 3 16 16 C 1.50707 * 109.46979 * 66.04436 * 15 5 4 17 17 C 1.34636 * 126.51476 * 269.69193 * 16 15 5 18 18 Cl 1.73606 * 125.03292 * 0.02562 * 17 16 15 19 19 N 1.36689 * 109.93721 * 179.82991 * 17 16 15 20 20 H 0.97001 * 125.06305 * 180.21424 * 19 17 16 21 21 C 1.37634 * 109.88776 * 0.44696 * 19 17 16 22 22 C 1.38820 * 134.44650 * 179.69246 * 21 19 17 23 23 N 1.31760 * 120.27775 * 180.02562 * 22 21 19 24 24 C 1.32298 * 122.57521 * 0.02562 * 23 22 21 25 25 C 1.36644 * 121.31692 * 359.97438 * 24 23 22 26 26 C 1.39849 * 118.69157 * 0.02820 * 25 24 23 27 27 H 1.09000 * 109.46851 * 299.99320 * 1 2 3 28 28 H 1.08995 * 109.47479 * 59.99721 * 1 2 3 29 29 H 1.09000 * 109.47184 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46851 * 240.00679 * 2 1 3 31 31 H 1.08998 * 109.47112 * 120.00642 * 2 1 3 32 32 H 1.09000 * 109.46746 * 60.00615 * 3 2 1 33 33 H 1.08995 * 109.47214 * 300.00440 * 3 2 1 34 34 H 1.08998 * 109.46704 * 60.34729 * 4 3 2 35 35 H 1.09006 * 109.47367 * 300.35052 * 4 3 2 36 36 H 1.08998 * 109.47359 * 54.30522 * 6 5 4 37 37 H 1.09003 * 109.46958 * 174.30380 * 6 5 4 38 38 H 0.96995 * 119.99400 * 180.02562 * 10 9 7 39 39 H 1.08993 * 109.47653 * 186.04922 * 15 5 4 40 40 H 1.09004 * 109.46896 * 306.04820 * 15 5 4 41 41 H 1.07997 * 119.85910 * 0.07336 * 22 21 19 42 42 H 1.08005 * 119.34203 * 180.02562 * 24 23 22 43 43 H 1.07992 * 120.65172 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8274 0.0078 6 6 3.5426 3.5756 -1.1458 7 6 4.1089 2.9951 -2.4159 8 1 4.8338 2.1959 -2.3681 9 6 3.7016 3.4840 -3.6391 10 7 2.8192 4.4575 -3.6973 11 14 4.4031 2.7639 -5.2134 12 1 3.5530 1.6319 -5.6618 13 1 4.4306 3.8100 -6.2671 14 1 5.7836 2.2772 -4.9630 15 6 3.7163 3.4996 1.2680 16 6 4.4624 2.8486 2.4041 17 6 4.0353 1.8166 3.1559 18 17 2.5100 1.0096 2.9663 19 7 4.9824 1.4954 4.0877 20 1 4.9023 0.7828 4.7410 21 6 6.0646 2.3369 3.9647 22 6 7.2749 2.4678 4.6318 23 7 8.1340 3.4000 4.2726 24 6 7.8970 4.2431 3.2809 25 6 6.7332 4.1905 2.5668 26 6 5.7826 3.2213 2.9026 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.6767 1.9562 0.8901 33 1 1.6766 1.9563 -0.8899 34 1 3.9329 0.9342 -0.8940 35 1 3.9338 0.9231 0.8860 36 1 2.4551 3.5046 -1.1671 37 1 3.8367 4.6218 -1.0618 38 1 2.5324 4.8012 -4.5578 39 1 3.9944 4.5517 1.2062 40 1 2.6436 3.4171 1.4432 41 1 7.5137 1.8023 5.4481 42 1 8.6386 4.9872 3.0302 43 1 6.5511 4.8838 1.7591 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237452078.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:12 Heat of formation + Delta-G solvation = 60.169637 kcal Electronic energy + Delta-G solvation = -25197.352474 eV Core-core repulsion = 21689.754674 eV Total energy + Delta-G solvation = -3507.597799 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.64004 -38.37532 -37.39272 -36.67646 -33.99756 -32.95040 -32.12696 -30.12408 -29.88868 -28.29007 -26.99162 -24.66276 -23.63403 -23.16345 -22.50409 -21.15924 -20.15314 -19.07533 -18.11762 -17.06545 -16.20616 -15.88298 -15.63106 -15.06894 -15.04459 -14.71312 -14.53587 -14.06241 -13.76047 -13.68969 -13.33545 -13.04899 -12.52757 -12.48580 -12.10785 -12.07212 -11.71708 -11.65360 -11.35232 -11.06031 -11.04246 -10.84740 -10.70750 -10.66576 -10.48411 -10.35310 -9.99387 -9.85825 -9.62495 -9.56064 -9.17093 -8.57158 -8.40508 -7.85831 -7.09561 -5.99972 -4.00193 0.89601 1.43714 1.49032 2.45156 3.10591 3.32959 3.39637 3.44178 3.93897 4.45473 4.47738 4.65570 4.79874 4.95096 5.05545 5.19472 5.35698 5.36566 5.37823 5.51410 5.56214 5.63304 5.76077 5.87573 5.99879 6.09492 6.12562 6.18678 6.20563 6.28044 6.33882 6.40996 6.53034 6.54898 6.60081 6.83726 6.84642 7.03423 7.13049 7.34634 7.46835 7.84335 8.03686 8.12435 8.23919 8.58821 9.07792 9.63753 11.10601 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.010961 B = 0.004869 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2553.871847 B = 5748.945431 C = 7749.931789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.158 4.158 4 C 0.068 3.932 5 N -0.527 5.527 6 C 0.189 3.811 7 C -0.501 4.501 8 H 0.061 0.939 9 C 0.057 3.943 10 N -0.899 5.899 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.288 1.288 14 H -0.274 1.274 15 C 0.115 3.885 16 C -0.104 4.104 17 C 0.117 3.883 18 Cl -0.001 7.001 19 N -0.579 5.579 20 H 0.419 0.581 21 C 0.049 3.951 22 C 0.107 3.893 23 N -0.466 5.466 24 C 0.048 3.952 25 C -0.098 4.098 26 C -0.054 4.054 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.004 0.996 37 H 0.025 0.975 38 H 0.260 0.740 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.152 0.848 42 H 0.156 0.844 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 -6.029 16.783 17.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.197 4.197 4 C -0.061 4.061 5 N -0.250 5.250 6 C 0.064 3.936 7 C -0.539 4.539 8 H 0.080 0.920 9 C -0.144 4.144 10 N -0.539 5.539 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.014 4.014 16 C -0.113 4.113 17 C -0.018 4.018 18 Cl 0.027 6.973 19 N -0.187 5.187 20 H 0.256 0.744 21 C -0.060 4.060 22 C -0.061 4.061 23 N -0.174 5.174 24 C -0.102 4.102 25 C -0.118 4.118 26 C -0.066 4.066 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.022 0.978 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.169 0.831 42 H 0.173 0.827 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.036 -5.922 17.040 18.155 hybrid contribution -1.651 -0.939 -1.056 2.173 sum 0.385 -6.861 15.984 17.399 Atomic orbital electron populations 1.21765 0.96716 1.00608 1.01609 1.21439 0.95039 0.97843 1.01162 1.22316 0.98819 0.96109 1.02464 1.22030 0.91675 0.91278 1.01099 1.62389 1.59381 1.02078 1.01123 1.19803 0.94058 0.93246 0.86455 1.21119 1.23950 1.19040 0.89831 0.92040 1.24940 0.95258 0.95198 0.99040 1.69952 1.31903 1.26854 1.25171 0.86573 0.79553 0.78654 0.83099 1.20845 1.21342 1.19837 1.20462 0.95579 0.97662 0.87647 1.20107 0.94239 0.97605 0.99300 1.20724 0.87290 0.98055 0.95736 1.98424 1.24327 1.78676 1.95839 1.41431 1.13959 1.31578 1.31728 0.74356 1.19255 0.91395 0.94727 1.00652 1.21708 0.87324 0.97669 0.99443 1.67557 1.30950 1.03706 1.15229 1.22059 0.96554 0.98465 0.93097 1.21365 0.92894 0.97671 0.99878 1.19070 0.94775 0.96906 0.95854 0.93529 0.92539 0.93547 0.92097 0.93137 0.92633 0.90368 0.90596 0.93150 0.97810 0.95702 0.93041 0.90262 0.94047 0.83089 0.82710 0.84109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.63 16 2 C -0.12 -1.73 5.72 -26.73 -0.15 -1.89 16 3 C -0.16 -2.77 3.58 -26.73 -0.10 -2.86 16 4 C 0.07 1.28 4.59 -3.82 -0.02 1.27 16 5 N -0.53 -10.91 4.70 -237.52 -1.12 -12.02 16 6 C 0.19 4.69 4.43 -4.98 -0.02 4.67 16 7 C -0.50 -13.65 8.46 -34.44 -0.29 -13.94 16 8 H 0.06 1.69 7.22 -52.48 -0.38 1.31 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 11 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 14 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.11 2.02 5.14 -4.97 -0.03 2.00 16 16 C -0.10 -1.62 5.20 -102.80 -0.53 -2.15 16 17 C 0.12 1.57 6.67 -16.66 -0.11 1.46 16 18 Cl 0.00 -0.02 22.97 -51.86 -1.19 -1.21 16 19 N -0.58 -6.46 6.06 -7.81 -0.05 -6.51 16 20 H 0.42 3.22 8.96 -40.82 -0.37 2.86 16 21 C 0.05 0.63 7.33 -83.98 -0.62 0.02 16 22 C 0.11 1.26 11.25 -17.37 -0.20 1.06 16 23 N -0.47 -6.19 10.32 -13.41 -0.14 -6.33 16 24 C 0.05 0.61 11.11 -17.93 -0.20 0.41 16 25 C -0.10 -1.37 10.13 -39.56 -0.40 -1.77 16 26 C -0.05 -0.82 6.42 -105.14 -0.67 -1.49 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.69 6.94 -51.93 -0.36 0.32 16 32 H 0.06 0.92 4.64 -51.93 -0.24 0.68 16 33 H 0.08 1.64 6.26 -51.93 -0.33 1.31 16 34 H 0.08 1.60 6.98 -51.93 -0.36 1.24 16 35 H 0.05 0.88 5.13 -51.93 -0.27 0.61 16 36 H 0.00 0.11 5.96 -51.93 -0.31 -0.20 16 37 H 0.02 0.66 7.94 -51.93 -0.41 0.25 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.08 1.39 7.94 -51.93 -0.41 0.98 16 40 H 0.04 0.72 5.92 -51.93 -0.31 0.41 16 41 H 0.15 1.26 8.06 -52.49 -0.42 0.84 16 42 H 0.16 1.58 8.06 -52.48 -0.42 1.15 16 43 H 0.14 1.89 8.06 -52.49 -0.42 1.46 16 LS Contribution 352.53 15.07 5.31 5.31 Total: -1.00 -30.31 352.53 -10.37 -40.68 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -5.84 Total: 2.36 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -3.06 Total: -13.37 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: -0.56 Total: -50.23 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.02 SS G_CDS: -1.19 Total: -1.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.31 -10.37 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237452078.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.849 kcal (2) G-P(sol) polarization free energy of solvation -30.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds