Wall clock time and date at job start Tue Mar 31 2020 12:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39750 * 120.14316 * 160.51416 * 3 2 1 5 5 C 1.37769 * 119.89508 * 180.25535 * 4 3 2 6 6 C 1.50707 * 119.90089 * 179.71912 * 5 4 3 7 7 N 1.46896 * 109.47067 * 104.99586 * 6 5 4 8 8 C 1.46949 * 111.00273 * 293.79905 * 7 6 5 9 9 C 1.53049 * 109.36739 * 176.81208 * 8 7 6 10 10 N 1.46959 * 109.36507 * 58.40210 * 9 8 7 11 11 C 1.46896 * 111.00034 * 176.81208 * 10 9 8 12 12 C 1.50700 * 109.47368 * 293.79728 * 11 10 9 13 13 H 1.07996 * 120.00058 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00005 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00162 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99907 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.46992 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.47100 * 120.00172 * 16 14 12 19 19 H 1.48497 * 109.47434 * 240.00087 * 16 14 12 20 20 C 1.46955 * 110.88094 * 300.68076 * 10 9 8 21 21 C 1.46959 * 111.00034 * 170.00054 * 7 6 5 22 22 C 1.38724 * 120.19492 * 359.46204 * 5 4 3 23 23 F 1.35101 * 119.85500 * 180.26092 * 22 5 4 24 24 C 1.38504 * 120.29359 * 0.51403 * 22 5 4 25 25 C 1.38180 * 120.09674 * 359.76482 * 24 22 5 26 26 F 1.35103 * 120.09552 * 179.97438 * 25 24 22 27 27 H 1.08002 * 120.04724 * 359.96964 * 4 3 2 28 28 H 1.08994 * 109.46968 * 224.99824 * 6 5 4 29 29 H 1.08998 * 109.46692 * 344.99579 * 6 5 4 30 30 H 1.08999 * 109.49144 * 296.78281 * 8 7 6 31 31 H 1.09003 * 109.48856 * 56.84422 * 8 7 6 32 32 H 1.08999 * 109.49080 * 298.43278 * 9 8 7 33 33 H 1.09005 * 109.51109 * 178.38090 * 9 8 7 34 34 H 1.09008 * 109.47296 * 53.80036 * 11 10 9 35 35 H 1.09000 * 109.47287 * 173.79904 * 11 10 9 36 36 H 0.97002 * 120.00178 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.48777 * 299.35481 * 20 10 9 38 38 H 1.08994 * 109.49015 * 179.28587 * 20 10 9 39 39 H 1.09006 * 109.48584 * 303.15720 * 21 7 6 40 40 H 1.08999 * 109.48944 * 63.21776 * 21 7 6 41 41 H 1.07998 * 119.95531 * 179.74937 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2692 1.1403 -0.4031 5 6 4.6469 1.1335 -0.4062 6 6 5.4032 2.3602 -0.8469 7 7 5.9639 3.0386 0.3292 8 6 4.8975 3.5779 1.1844 9 6 5.5180 4.2051 2.4349 10 7 6.4548 5.2645 2.0351 11 6 7.0154 5.9429 3.2112 12 6 5.9211 6.6891 3.9300 13 1 4.9101 6.6618 3.5512 14 6 6.2104 7.4059 5.0717 15 7 7.4414 7.4388 5.5332 16 14 4.8537 8.3302 5.9630 17 1 3.5679 8.1342 5.2465 18 1 4.7309 7.8132 7.3497 19 1 5.1836 9.7776 6.0018 20 6 7.5213 4.7253 1.1799 21 6 6.9006 4.0981 -0.0706 22 6 5.3399 0.0026 0.0004 23 9 6.6909 0.0053 -0.0003 24 6 4.6530 -1.1310 0.4020 25 6 3.2712 -1.1395 0.4043 26 9 2.6012 -2.2455 0.7955 27 1 2.7319 2.0233 -0.7162 28 1 6.2114 2.0675 -1.5171 29 1 4.7260 3.0368 -1.3681 30 1 4.3398 4.3367 0.6355 31 1 4.2241 2.7724 1.4775 32 1 6.0528 3.4404 2.9982 33 1 4.7311 4.6313 3.0572 34 1 7.4530 5.2040 3.8827 35 1 7.7855 6.6455 2.8927 36 1 7.6449 7.9427 6.3367 37 1 8.0789 3.9665 1.7288 38 1 8.1946 5.5308 0.8868 39 1 7.6878 3.6717 -0.6926 40 1 6.3658 4.8628 -0.6339 41 1 5.1981 -2.0098 0.7135 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237526684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:28 Heat of formation + Delta-G solvation = -37.995155 kcal Electronic energy + Delta-G solvation = -26376.994886 eV Core-core repulsion = 22313.343662 eV Total energy + Delta-G solvation = -4063.651224 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.135 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.24681 -49.99921 -40.72872 -39.72512 -37.69741 -36.64145 -34.64273 -32.72372 -32.30781 -31.72799 -29.80103 -27.48540 -25.39159 -25.17771 -24.38099 -23.45151 -22.91255 -20.59225 -19.79208 -19.19751 -18.51123 -18.46061 -17.41863 -17.07799 -16.68708 -16.50959 -16.20221 -15.91065 -15.79021 -15.74445 -15.46711 -15.35609 -15.07994 -14.95215 -14.80665 -14.54757 -14.33498 -14.02213 -13.71066 -13.39546 -13.25711 -13.13258 -12.81992 -12.74559 -12.64895 -12.47179 -12.32825 -12.19344 -12.06215 -11.83829 -11.44635 -11.14592 -10.61718 -10.19972 -9.79258 -9.27179 -8.98681 -8.20009 -6.30082 -0.64286 -0.15129 1.41479 1.42029 1.43158 1.55346 1.58466 2.40380 2.40786 2.55047 2.68859 3.05177 3.12666 3.18296 3.35017 3.47910 3.52436 3.96069 4.05429 4.27154 4.29563 4.34003 4.45606 4.50156 4.55701 4.66011 4.71591 4.73783 4.78659 4.82560 4.93650 5.00486 5.05365 5.08604 5.11698 5.26768 5.32320 5.50042 5.65448 6.03134 6.08261 6.12982 6.27444 6.37877 6.66322 6.86759 7.39954 8.91429 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.014227 B = 0.003090 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.556239 B = 9060.407017 C =10138.044299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.275 3.725 3 C -0.078 4.078 4 C 0.006 3.994 5 C -0.124 4.124 6 C 0.095 3.905 7 N -0.546 5.546 8 C 0.070 3.930 9 C 0.068 3.932 10 N -0.543 5.543 11 C 0.209 3.791 12 C -0.521 4.521 13 H 0.064 0.936 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.280 1.280 19 H -0.278 1.278 20 C 0.052 3.948 21 C 0.075 3.925 22 C 0.185 3.815 23 F -0.120 7.120 24 C -0.187 4.187 25 C 0.176 3.824 26 F -0.127 7.127 27 H 0.174 0.826 28 H 0.106 0.894 29 H 0.074 0.926 30 H 0.047 0.953 31 H 0.090 0.910 32 H 0.011 0.989 33 H 0.065 0.935 34 H -0.043 1.043 35 H 0.003 0.997 36 H 0.264 0.736 37 H 0.018 0.982 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.047 0.953 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -17.209 -16.734 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.121 5.121 2 C -0.040 4.040 3 C -0.082 4.082 4 C -0.015 4.015 5 C -0.125 4.125 6 C -0.032 4.032 7 N -0.271 5.271 8 C -0.058 4.058 9 C -0.061 4.061 10 N -0.268 5.268 11 C 0.082 3.918 12 C -0.559 4.559 13 H 0.082 0.918 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.793 3.207 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.076 4.076 21 C -0.053 4.053 22 C 0.164 3.836 23 F -0.098 7.098 24 C -0.206 4.206 25 C 0.154 3.846 26 F -0.106 7.106 27 H 0.191 0.809 28 H 0.124 0.876 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.108 0.892 32 H 0.029 0.971 33 H 0.083 0.917 34 H -0.025 1.025 35 H 0.021 0.979 36 H 0.073 0.927 37 H 0.036 0.964 38 H 0.088 0.912 39 H 0.120 0.880 40 H 0.065 0.935 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.115 -17.173 -16.600 24.655 hybrid contribution 0.402 0.347 1.261 1.368 sum -5.713 -16.826 -15.339 23.474 Atomic orbital electron populations 1.81298 1.13038 1.07909 1.09869 1.25412 0.92355 0.93281 0.92943 1.15908 0.84172 0.96181 1.11984 1.21047 0.92082 0.96291 0.92032 1.19822 0.93446 0.95560 1.03704 1.21037 0.98970 0.91604 0.91574 1.62136 1.17269 1.29166 1.18542 1.22110 0.92843 0.97808 0.93071 1.21974 0.95996 0.91387 0.96733 1.62229 1.17335 1.27393 1.19835 1.19337 0.94317 0.91771 0.86343 1.21488 0.95613 1.29796 1.08998 0.91784 1.25913 0.98000 0.97629 0.98147 1.70095 1.20607 1.43130 1.23775 0.85349 0.79222 0.78074 0.78063 1.18586 1.20578 1.20412 1.22184 0.93519 0.97215 0.94710 1.22056 0.95956 0.92159 0.95139 1.17429 0.77320 0.93334 0.95538 1.91587 1.28390 1.96745 1.93054 1.21050 0.91965 1.00980 1.06634 1.17225 0.89358 0.81872 0.96158 1.91575 1.80427 1.50737 1.87836 0.80872 0.87615 0.90753 0.93499 0.89212 0.97083 0.91694 1.02523 0.97870 0.92723 0.96395 0.91183 0.88024 0.93483 0.80549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.87 18.54 19.00 0.35 -10.51 16 2 C 0.27 5.22 14.98 88.33 1.32 6.54 16 3 C -0.08 -1.08 5.74 -21.26 -0.12 -1.20 16 4 C 0.01 0.07 8.72 22.52 0.20 0.26 16 5 C -0.12 -1.57 4.43 -19.86 -0.09 -1.66 16 6 C 0.09 1.29 4.76 85.56 0.41 1.70 16 7 N -0.55 -12.09 4.70 -900.29 -4.23 -16.32 16 8 C 0.07 1.79 5.42 86.31 0.47 2.26 16 9 C 0.07 2.53 5.43 86.31 0.47 3.00 16 10 N -0.54 -22.92 4.70 -900.28 -4.23 -27.15 16 11 C 0.21 11.16 4.72 85.56 0.40 11.56 16 12 C -0.52 -29.36 8.47 25.60 0.22 -29.14 16 13 H 0.06 3.52 7.13 -2.91 -0.02 3.50 16 14 C 0.00 0.06 5.46 84.65 0.46 0.52 16 15 N -0.94 -56.45 13.29 21.45 0.28 -56.17 16 16 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 17 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C 0.05 1.79 5.61 86.31 0.48 2.27 16 21 C 0.07 1.78 5.61 86.31 0.48 2.26 16 22 C 0.18 2.58 7.25 22.45 0.16 2.74 16 23 F -0.12 -2.08 16.74 44.97 0.75 -1.32 16 24 C -0.19 -2.21 9.99 22.32 0.22 -1.99 16 25 C 0.18 2.43 7.28 22.67 0.16 2.60 16 26 F -0.13 -2.11 16.81 44.97 0.76 -1.35 16 27 H 0.17 1.19 7.99 -2.91 -0.02 1.17 16 28 H 0.11 1.20 7.96 -2.39 -0.02 1.18 16 29 H 0.07 0.78 7.92 -2.39 -0.02 0.76 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.95 6.71 -2.39 -0.02 1.94 16 32 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 2.66 6.79 -2.38 -0.02 2.65 16 34 H -0.04 -2.53 8.12 -2.38 -0.02 -2.55 16 35 H 0.00 0.18 8.03 -2.39 -0.02 0.17 16 36 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 37 H 0.02 0.65 8.14 -2.39 -0.02 0.64 16 38 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 39 H 0.10 1.88 8.07 -2.38 -0.02 1.86 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -69.19 355.22 2.02 -67.17 By element: Atomic # 1 Polarization: -3.26 SS G_CDS: 1.06 Total: -2.20 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: 5.25 Total: 1.73 kcal Atomic # 7 Polarization: -102.32 SS G_CDS: -7.83 Total: -110.14 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 1.51 Total: -2.68 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Total: -69.19 2.02 -67.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237526684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.173 kcal (2) G-P(sol) polarization free energy of solvation -69.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds