Wall clock time and date at job start Tue Mar 31 2020 13:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47018 * 2 1 4 4 C 1.52999 * 109.47018 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47214 * 180.02562 * 4 3 2 6 6 C 1.46902 * 110.99920 * 66.04613 * 5 4 3 7 7 C 1.50702 * 109.46713 * 61.91151 * 6 5 4 8 8 H 1.08003 * 120.00118 * 4.70169 * 7 6 5 9 9 C 1.37881 * 119.99876 * 184.69955 * 7 6 5 10 10 N 1.31513 * 120.00276 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99759 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47314 * 59.99850 * 11 9 7 13 13 H 1.48504 * 109.47158 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47121 * 299.99467 * 11 9 7 15 15 C 1.46895 * 111.00197 * 190.00268 * 5 4 3 16 16 C 1.50708 * 109.47152 * 164.16076 * 15 5 4 17 17 N 1.30231 * 126.10159 * 90.02272 * 16 15 5 18 18 N 1.39878 * 110.08326 * 179.97438 * 17 16 15 19 19 H 0.96994 * 125.46083 * 180.02562 * 18 17 16 20 20 C 1.37050 * 109.07188 * 0.02562 * 18 17 16 21 21 C 1.39279 * 133.80392 * 179.97438 * 20 18 17 22 22 C 1.37690 * 119.73072 * 180.02562 * 21 20 18 23 23 Cl 1.73594 * 119.68080 * 179.97438 * 22 21 20 24 24 C 1.39091 * 120.63827 * 359.97438 * 22 21 20 25 25 C 1.36416 * 120.62497 * 0.02791 * 24 22 21 26 26 C 1.39939 * 119.79049 * 359.69163 * 25 24 22 27 27 H 1.08997 * 109.46670 * 299.99395 * 1 2 3 28 28 H 1.08991 * 109.47218 * 59.99373 * 1 2 3 29 29 H 1.09004 * 109.46780 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47250 * 240.00985 * 2 1 3 31 31 H 1.08995 * 109.47660 * 120.00848 * 2 1 3 32 32 H 1.08997 * 109.46906 * 60.00749 * 3 2 1 33 33 H 1.08995 * 109.47597 * 300.00886 * 3 2 1 34 34 H 1.09003 * 109.47069 * 60.00462 * 4 3 2 35 35 H 1.09002 * 109.47668 * 300.00459 * 4 3 2 36 36 H 1.08996 * 109.47324 * 181.91065 * 6 5 4 37 37 H 1.08998 * 109.47303 * 301.91348 * 6 5 4 38 38 H 0.96990 * 120.00124 * 180.02562 * 10 9 7 39 39 H 1.08997 * 109.47410 * 284.16070 * 15 5 4 40 40 H 1.08998 * 109.46993 * 44.16482 * 15 5 4 41 41 H 1.08007 * 120.13337 * 0.02562 * 21 20 18 42 42 H 1.08004 * 119.68998 * 179.97438 * 24 22 21 43 43 H 1.08003 * 120.10324 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0597 2.8275 0.0000 6 6 3.7107 3.5087 1.2539 7 6 4.3718 2.8029 2.4097 8 1 5.0495 1.9825 2.2252 9 6 4.1114 3.2046 3.7027 10 7 3.2859 4.2033 3.9275 11 14 4.9315 2.3301 5.1354 12 1 6.4062 2.4528 5.0116 13 1 4.4882 2.9474 6.4113 14 1 4.5512 0.8947 5.1223 15 6 5.5083 2.8738 -0.2388 16 6 5.9107 4.2763 -0.6164 17 7 6.2759 5.2176 0.2061 18 7 6.5765 6.3851 -0.5031 19 1 6.8717 7.2216 -0.1107 20 6 6.3872 6.1576 -1.8412 21 6 6.5302 6.9432 -2.9824 22 6 6.2532 6.4066 -4.2199 23 17 6.4313 7.3871 -5.6413 24 6 5.8322 5.0866 -4.3420 25 6 5.6852 4.2991 -3.2378 26 6 5.9664 4.8201 -1.9698 27 1 -0.3632 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8898 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8898 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9565 -0.8898 34 1 3.9329 0.9289 -0.8909 35 1 3.9338 0.9285 0.8891 36 1 4.0552 4.5420 1.2141 37 1 2.6292 3.4912 1.3881 38 1 3.1030 4.4861 4.8371 39 1 6.0357 2.5762 0.6675 40 1 5.7650 2.1916 -1.0492 41 1 6.8571 7.9690 -2.8970 42 1 5.6187 4.6815 -5.3201 43 1 5.3574 3.2753 -3.3423 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237995020.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:06 Heat of formation + Delta-G solvation = 66.922705 kcal Electronic energy + Delta-G solvation = -24523.802586 eV Core-core repulsion = 21016.497622 eV Total energy + Delta-G solvation = -3507.304964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 321.130 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08239 -37.68482 -37.16730 -36.04644 -34.29544 -32.70898 -32.03181 -29.82166 -29.45617 -28.34914 -27.23879 -24.87320 -23.23404 -23.04811 -22.12387 -21.19076 -19.82523 -19.15687 -17.79632 -16.81619 -16.32091 -15.72879 -15.27902 -14.99901 -14.67617 -14.55064 -14.19825 -13.98049 -13.80514 -13.53345 -12.95150 -12.86410 -12.51203 -12.26937 -12.21713 -12.05460 -11.48802 -11.16794 -11.09025 -11.03490 -10.99087 -10.91580 -10.76824 -10.51999 -10.48699 -10.36955 -10.08502 -10.03308 -9.90238 -9.81686 -9.47531 -8.42719 -8.35424 -7.91660 -7.21360 -5.98120 -4.05308 0.89490 1.47992 1.96283 2.71709 3.00134 3.30520 3.35554 3.37621 3.72642 4.43955 4.64140 4.70707 4.87820 5.02096 5.11500 5.29621 5.33810 5.40202 5.49523 5.56567 5.57339 5.71062 5.76892 5.90983 6.05557 6.11328 6.14280 6.17577 6.25330 6.30356 6.38094 6.45952 6.52562 6.56490 6.60908 6.81211 6.95040 6.97815 7.28796 7.46898 7.59536 7.92483 7.96455 8.05471 8.25836 8.31381 9.01995 9.59888 11.07706 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.012093 B = 0.003643 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.922942 B = 7684.000626 C = 9455.327278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.111 4.111 4 C 0.065 3.935 5 N -0.537 5.537 6 C 0.184 3.816 7 C -0.541 4.541 8 H 0.055 0.945 9 C 0.069 3.931 10 N -0.890 5.890 11 Si 0.884 3.116 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.278 1.278 15 C 0.130 3.870 16 C 0.133 3.867 17 N -0.214 5.214 18 N -0.513 5.513 19 H 0.438 0.562 20 C 0.134 3.866 21 C -0.139 4.139 22 C 0.011 3.989 23 Cl -0.074 7.074 24 C -0.162 4.162 25 C -0.014 4.014 26 C -0.158 4.158 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.033 0.967 37 H 0.037 0.963 38 H 0.261 0.739 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.832 0.225 -15.758 16.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.063 4.063 5 N -0.262 5.262 6 C 0.058 3.942 7 C -0.581 4.581 8 H 0.073 0.927 9 C -0.134 4.134 10 N -0.528 5.528 11 Si 0.712 3.288 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.203 1.203 15 C 0.000 4.000 16 C -0.046 4.046 17 N -0.028 5.028 18 N -0.225 5.225 19 H 0.282 0.718 20 C 0.017 3.983 21 C -0.163 4.163 22 C -0.018 4.018 23 Cl -0.045 7.045 24 C -0.183 4.183 25 C -0.035 4.035 26 C -0.166 4.166 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.094 0.906 41 H 0.150 0.850 42 H 0.151 0.849 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.744 1.004 -14.853 15.351 hybrid contribution 0.855 -0.214 0.965 1.307 sum 4.599 0.791 -13.888 14.651 Atomic orbital electron populations 1.21749 0.96466 1.00719 1.01762 1.21471 0.95319 0.97786 1.01309 1.21532 0.95396 0.95376 1.02616 1.21902 0.95033 0.89825 0.99539 1.62499 1.09639 1.15198 1.38845 1.19837 0.97005 0.94432 0.82891 1.21569 1.27339 1.17184 0.91964 0.92732 1.24878 0.94950 0.94864 0.98680 1.69927 1.35242 1.26916 1.20755 0.86788 0.80008 0.79877 0.82110 1.20311 1.21340 1.20345 1.20357 0.91772 0.87112 1.00798 1.23614 0.96487 0.96461 0.88073 1.76992 1.15591 0.91369 1.18819 1.46140 1.61415 1.13162 1.01828 0.71802 1.18593 0.98638 0.94910 0.86164 1.19694 1.08014 1.00043 0.88511 1.20491 1.02205 0.92226 0.86926 1.98358 1.96158 1.70702 1.39308 1.20423 1.06022 0.92255 0.99587 1.20280 0.94051 0.99734 0.89392 1.19940 1.08780 0.93458 0.94453 0.92691 0.93077 0.93489 0.92788 0.92221 0.90908 0.92415 0.93206 0.93604 0.94891 0.94511 0.92928 0.91207 0.90625 0.85016 0.84893 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.70 5.93 -26.73 -0.16 -1.86 16 3 C -0.11 -1.89 5.14 -26.73 -0.14 -2.03 16 4 C 0.07 1.17 4.76 -3.82 -0.02 1.15 16 5 N -0.54 -10.82 4.66 -237.52 -1.11 -11.93 16 6 C 0.18 4.58 4.77 -4.97 -0.02 4.56 16 7 C -0.54 -14.36 7.33 -34.44 -0.25 -14.61 16 8 H 0.05 1.42 5.95 -52.48 -0.31 1.11 16 9 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 10 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 11 Si 0.88 21.32 29.54 -169.99 -5.02 16.30 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.13 2.38 5.41 -4.97 -0.03 2.36 16 16 C 0.13 2.47 6.27 -80.18 -0.50 1.96 16 17 N -0.21 -4.26 11.89 34.85 0.41 -3.84 16 18 N -0.51 -8.14 7.37 32.36 0.24 -7.90 16 19 H 0.44 5.53 8.96 -182.77 -1.64 3.89 16 20 C 0.13 2.02 7.33 -84.18 -0.62 1.41 16 21 C -0.14 -1.75 9.84 -39.39 -0.39 -2.14 16 22 C 0.01 0.13 6.31 -39.47 -0.25 -0.12 16 23 Cl -0.07 -0.77 28.93 -51.86 -1.50 -2.27 16 24 C -0.16 -1.88 9.74 -39.92 -0.39 -2.27 16 25 C -0.01 -0.18 10.05 -39.60 -0.40 -0.58 16 26 C -0.16 -2.52 6.33 -105.20 -0.67 -3.18 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.46 6.51 -51.93 -0.34 1.13 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.76 7.86 -51.93 -0.41 0.35 16 35 H 0.05 0.91 6.51 -51.93 -0.34 0.57 16 36 H 0.03 0.91 6.92 -51.93 -0.36 0.56 16 37 H 0.04 1.00 6.38 -51.93 -0.33 0.67 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.07 1.43 6.23 -51.93 -0.32 1.11 16 40 H 0.08 1.13 7.81 -51.93 -0.41 0.73 16 41 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 42 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 43 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -30.06 366.08 -11.67 -41.73 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -7.40 Total: 2.78 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -3.56 Total: -15.09 kcal Atomic # 7 Polarization: -49.25 SS G_CDS: 0.28 Total: -48.97 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.06 -11.67 -41.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237995020.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.658 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds