Wall clock time and date at job start Tue Mar 31 2020 12:22:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86796 * 119.99616 * 2 1 4 4 H 1.48505 * 109.47185 * 239.99662 * 3 2 1 5 5 H 1.48505 * 109.47199 * 120.00327 * 3 2 1 6 6 H 1.48493 * 109.47577 * 0.02562 * 3 2 1 7 7 C 1.38692 * 119.99905 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99748 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00628 * 359.97438 * 7 2 1 10 10 C 1.35515 * 117.00307 * 174.94598 * 9 7 2 11 11 C 1.38834 * 120.16172 * 5.60021 * 10 9 7 12 12 C 1.38025 * 120.06914 * 179.72086 * 11 10 9 13 13 C 1.38576 * 120.40331 * 0.55544 * 12 11 10 14 14 C 1.37831 * 120.32155 * 359.72090 * 13 12 11 15 15 C 1.39668 * 119.92024 * 0.02562 * 14 13 12 16 16 C 1.47528 * 120.19683 * 179.97438 * 15 14 13 17 17 O 1.21589 * 120.00092 * 214.42909 * 16 15 14 18 18 N 1.34779 * 120.00115 * 34.42885 * 16 15 14 19 19 C 1.46923 * 120.63018 * 356.58992 * 18 16 15 20 20 C 1.53187 * 108.77862 * 126.36685 * 19 18 16 21 21 C 1.53038 * 109.31411 * 54.63144 * 20 19 18 22 22 H 1.09005 * 109.46222 * 58.64489 * 21 20 19 23 23 O 1.42901 * 109.46325 * 178.61314 * 21 20 19 24 24 C 1.53043 * 109.54081 * 298.63708 * 21 20 19 25 25 H 1.09002 * 109.49725 * 301.38155 * 24 21 20 26 26 C 1.52996 * 109.49820 * 181.31245 * 24 21 20 27 27 O 1.42905 * 109.46640 * 174.99788 * 26 24 21 28 28 C 1.46926 * 120.62852 * 176.30120 * 18 16 15 29 29 H 0.97005 * 119.99383 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.96404 * 359.97438 * 11 10 9 31 31 H 1.08005 * 119.79768 * 180.29748 * 12 11 10 32 32 H 1.08002 * 119.83984 * 179.69739 * 13 12 11 33 33 H 1.07991 * 120.03839 * 180.02562 * 14 13 12 34 34 H 1.09005 * 109.58234 * 246.15276 * 19 18 16 35 35 H 1.08995 * 109.58682 * 6.43247 * 19 18 16 36 36 H 1.09004 * 109.49717 * 174.58521 * 20 19 18 37 37 H 1.09004 * 109.49413 * 294.68107 * 20 19 18 38 38 H 0.96693 * 114.00045 * 300.00324 * 23 21 20 39 39 H 1.08993 * 109.47348 * 295.00075 * 26 24 21 40 40 H 1.09000 * 109.46858 * 55.00314 * 26 24 21 41 41 H 0.96704 * 113.99676 * 180.02562 * 27 26 24 42 42 H 1.08997 * 109.58872 * 353.42548 * 28 18 16 43 43 H 1.09005 * 109.58326 * 113.85067 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6965 -1.2125 5 1 3.1030 1.6965 1.2125 6 1 1.2842 2.7464 0.0006 7 6 2.0087 -1.2011 0.0005 8 1 3.0887 -1.2011 0.0010 9 8 1.3347 -2.3687 0.0016 10 6 2.0687 -3.5030 -0.1043 11 6 3.4556 -3.4402 -0.0907 12 6 4.2013 -4.5971 -0.1929 13 6 3.5745 -5.8264 -0.3211 14 6 2.1988 -5.9072 -0.3422 15 6 1.4309 -4.7455 -0.2344 16 6 -0.0420 -4.8249 -0.2568 17 8 -0.6910 -3.9358 -0.7733 18 7 -0.6684 -5.8829 0.2952 19 6 0.1030 -7.0003 0.8564 20 6 -0.3542 -7.2399 2.2987 21 6 -1.8701 -7.4487 2.3212 22 1 -2.1290 -8.2985 1.6895 23 8 -2.2957 -7.7045 3.6611 24 6 -2.5677 -6.1919 1.7958 25 1 -2.2901 -5.3370 2.4124 26 6 -4.0839 -6.3894 1.8492 27 8 -4.7359 -5.1759 1.4692 28 6 -2.1355 -5.9379 0.3528 29 1 -0.4849 -0.8401 0.0004 30 1 3.9514 -2.4854 0.0040 31 1 5.2799 -4.5437 -0.1771 32 1 4.1670 -6.7255 -0.4053 33 1 1.7151 -6.8676 -0.4418 34 1 -0.0712 -7.8986 0.2639 35 1 1.1647 -6.7543 0.8435 36 1 0.1411 -8.1264 2.6949 37 1 -0.0969 -6.3750 2.9103 38 1 -1.8936 -8.4890 4.0585 39 1 -4.3710 -7.1863 1.1634 40 1 -4.3797 -6.6586 2.8632 41 1 -5.7015 -5.2279 1.4808 42 1 -2.5504 -4.9901 0.0099 43 1 -2.4960 -6.7478 -0.2816 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362759194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:57 Heat of formation + Delta-G solvation = -149.742000 kcal Electronic energy + Delta-G solvation = -28053.899425 eV Core-core repulsion = 24064.197259 eV Total energy + Delta-G solvation = -3989.702167 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.87512 -40.59633 -39.28751 -38.30631 -37.61049 -36.75844 -34.36806 -33.81306 -32.20426 -31.81679 -30.67610 -27.37495 -26.83717 -26.33993 -24.09837 -23.54856 -23.13187 -21.62721 -20.73876 -20.26505 -18.70657 -18.46848 -18.40269 -17.92890 -17.34193 -16.89582 -16.31887 -16.10264 -15.89767 -15.68101 -15.58907 -15.44372 -15.26578 -15.14442 -14.80391 -14.51703 -14.28265 -14.05825 -13.84045 -13.17429 -13.09172 -12.97484 -12.71516 -12.54624 -12.50360 -12.35903 -12.11882 -12.10615 -11.96569 -11.52787 -11.48479 -10.99823 -10.94776 -10.81551 -10.66114 -9.89445 -9.70321 -9.15380 -8.99336 -6.29900 0.06096 0.60090 1.43017 1.58195 1.73342 1.74800 2.01378 2.32911 2.78988 3.05746 3.10362 3.22235 3.25676 3.54774 3.71336 3.81040 3.93601 3.96870 4.04064 4.13592 4.19574 4.30467 4.42116 4.43589 4.45429 4.50465 4.57444 4.64363 4.72260 4.81206 4.87957 4.91422 4.96921 5.04104 5.13264 5.23743 5.40760 5.49141 5.57866 5.60589 5.97501 6.18556 6.33265 6.82151 6.87126 6.91882 7.21135 7.59809 8.43552 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012319 B = 0.004438 C = 0.003538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.296459 B = 6308.038523 C = 7911.154244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.048 4.048 3 Si 1.150 2.850 4 H -0.256 1.256 5 H -0.254 1.254 6 H -0.276 1.276 7 C -0.495 4.495 8 H 0.099 0.901 9 O -0.228 6.228 10 C 0.148 3.852 11 C -0.252 4.252 12 C -0.042 4.042 13 C -0.189 4.189 14 C -0.047 4.047 15 C -0.238 4.238 16 C 0.554 3.446 17 O -0.586 6.586 18 N -0.610 5.610 19 C 0.069 3.931 20 C -0.162 4.162 21 C 0.124 3.876 22 H 0.097 0.903 23 O -0.580 6.580 24 C -0.097 4.097 25 H 0.035 0.965 26 C 0.090 3.910 27 O -0.602 6.602 28 C 0.127 3.873 29 H 0.257 0.743 30 H 0.121 0.879 31 H 0.158 0.842 32 H 0.174 0.826 33 H 0.180 0.820 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.039 0.961 38 H 0.400 0.600 39 H 0.076 0.924 40 H 0.064 0.936 41 H 0.398 0.602 42 H 0.051 0.949 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.988 -24.089 4.735 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.245 4.245 3 Si 0.964 3.036 4 H -0.180 1.180 5 H -0.178 1.178 6 H -0.200 1.200 7 C -0.571 4.571 8 H 0.117 0.883 9 O -0.133 6.133 10 C 0.095 3.905 11 C -0.271 4.271 12 C -0.060 4.060 13 C -0.207 4.207 14 C -0.065 4.065 15 C -0.242 4.242 16 C 0.346 3.654 17 O -0.466 6.466 18 N -0.344 5.344 19 C -0.051 4.051 20 C -0.200 4.200 21 C 0.065 3.935 22 H 0.115 0.885 23 O -0.389 6.389 24 C -0.117 4.117 25 H 0.054 0.946 26 C 0.012 3.988 27 O -0.411 6.411 28 C 0.004 3.996 29 H 0.066 0.934 30 H 0.139 0.861 31 H 0.175 0.825 32 H 0.191 0.809 33 H 0.197 0.803 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.058 0.942 38 H 0.251 0.749 39 H 0.094 0.906 40 H 0.082 0.918 41 H 0.248 0.752 42 H 0.070 0.930 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.436 -21.208 4.325 21.692 hybrid contribution -0.589 -1.372 0.224 1.509 sum 0.847 -22.580 4.549 23.049 Atomic orbital electron populations 1.70633 1.08167 1.30178 1.45445 1.28671 0.96755 1.05471 0.93592 0.82589 0.73712 0.68255 0.79079 1.18041 1.17781 1.20040 1.22754 0.93841 0.83018 1.57459 0.88346 1.83773 1.36730 1.13116 1.79637 1.19908 0.91763 0.86660 0.92183 1.21315 0.92076 1.01175 1.12555 1.21486 1.00879 0.91155 0.92480 1.21297 0.93677 0.98637 1.07109 1.21710 0.94561 0.95920 0.94299 1.19206 0.92148 0.93112 1.19777 1.18675 0.88295 0.80870 0.77590 1.90793 1.68422 1.40246 1.47151 1.48065 1.06849 1.20236 1.59205 1.23014 0.98865 0.89027 0.94231 1.22674 0.96748 1.03817 0.96762 1.21610 0.92107 0.95444 0.84303 0.88514 1.86499 1.71350 1.52657 1.28427 1.21435 0.96067 0.98557 0.95642 0.94617 1.22128 0.90214 0.86326 1.00144 1.86559 1.25617 1.37106 1.91856 1.21397 0.79386 1.02672 0.96135 0.93421 0.86101 0.82484 0.80885 0.80325 0.86602 0.86223 0.85479 0.94186 0.74925 0.90598 0.91770 0.75248 0.92999 0.88280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -63.57 13.70 21.62 0.30 -63.27 16 2 C -0.05 -3.02 5.49 84.85 0.47 -2.55 16 3 Si 1.15 51.41 29.92 68.60 2.05 53.46 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 7 C -0.50 -31.17 9.49 67.93 0.64 -30.53 16 8 H 0.10 5.59 5.21 -2.91 -0.02 5.58 16 9 O -0.23 -14.93 7.78 -2.89 -0.02 -14.95 16 10 C 0.15 7.84 6.63 22.91 0.15 7.99 16 11 C -0.25 -10.97 9.16 22.36 0.20 -10.77 16 12 C -0.04 -1.28 10.03 22.30 0.22 -1.05 16 13 C -0.19 -4.72 10.03 22.25 0.22 -4.50 16 14 C -0.05 -1.39 7.44 22.52 0.17 -1.22 16 15 C -0.24 -10.54 5.53 -19.99 -0.11 -10.65 16 16 C 0.55 26.48 7.30 86.69 0.63 27.12 16 17 O -0.59 -35.81 15.34 13.15 0.20 -35.61 16 18 N -0.61 -20.96 2.98 -823.51 -2.45 -23.41 16 19 C 0.07 1.43 4.98 86.36 0.43 1.86 16 20 C -0.16 -2.91 5.70 30.67 0.17 -2.74 16 21 C 0.12 2.23 2.88 30.62 0.09 2.32 16 22 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 23 O -0.58 -9.91 12.50 -148.98 -1.86 -11.77 16 24 C -0.10 -2.74 2.31 -10.86 -0.03 -2.77 16 25 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 26 C 0.09 2.07 6.35 71.98 0.46 2.53 16 27 O -0.60 -17.15 13.30 -148.98 -1.98 -19.14 16 28 C 0.13 4.12 5.51 86.22 0.48 4.60 16 29 H 0.26 19.54 7.97 -92.70 -0.74 18.80 16 30 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 31 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 32 H 0.17 2.50 8.06 -2.91 -0.02 2.48 16 33 H 0.18 3.52 5.40 -2.91 -0.02 3.50 16 34 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.12 2.54 3.50 -3.71 -0.01 2.52 16 36 H 0.13 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.04 1.04 8.14 -2.38 -0.02 1.03 16 38 H 0.40 2.57 9.08 -74.06 -0.67 1.90 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.06 1.39 7.50 -2.39 -0.02 1.37 16 41 H 0.40 6.79 9.12 -74.05 -0.68 6.12 16 42 H 0.05 2.27 6.86 -2.39 -0.02 2.25 16 43 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 Total: -1.00 -102.86 349.05 0.19 -102.67 By element: Atomic # 1 Polarization: 32.63 SS G_CDS: -0.24 Total: 32.39 kcal Atomic # 6 Polarization: -24.56 SS G_CDS: 4.20 Total: -20.36 kcal Atomic # 7 Polarization: -84.53 SS G_CDS: -2.16 Total: -86.69 kcal Atomic # 8 Polarization: -77.80 SS G_CDS: -3.67 Total: -81.47 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -102.86 0.19 -102.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362759194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.074 kcal (2) G-P(sol) polarization free energy of solvation -102.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds