Wall clock time and date at job start Tue Mar 31 2020 13:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53002 * 109.47317 * 2 1 4 4 C 1.50694 * 109.47141 * 239.99461 * 2 1 3 5 5 H 1.08003 * 120.00208 * 239.99470 * 4 2 1 6 6 C 1.37875 * 120.00161 * 60.00610 * 4 2 1 7 7 N 1.31510 * 119.99917 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00219 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47046 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47346 * 119.99427 * 8 6 4 11 11 H 1.48497 * 109.46995 * 239.99481 * 8 6 4 12 12 C 1.53005 * 109.47212 * 119.99521 * 2 1 3 13 13 N 1.46497 * 109.46985 * 300.00501 * 12 2 1 14 14 C 1.34779 * 120.00083 * 179.97438 * 13 12 2 15 15 O 1.21550 * 119.99931 * 359.97438 * 14 13 12 16 16 C 1.47856 * 120.00174 * 179.97438 * 14 13 12 17 17 C 1.39610 * 120.11619 * 359.97438 * 16 14 13 18 18 C 1.37962 * 119.96170 * 180.02562 * 17 16 14 19 19 C 1.38289 * 120.21190 * 359.73100 * 18 17 16 20 20 C 1.38817 * 120.23313 * 0.54083 * 19 18 17 21 21 O 1.35908 * 119.98084 * 179.72809 * 20 19 18 22 22 C 1.42896 * 117.00334 * 359.72889 * 21 20 19 23 23 C 1.50702 * 109.47270 * 180.02562 * 22 21 20 24 24 O 1.20822 * 119.99854 * 359.72316 * 23 22 21 25 25 O 1.34234 * 119.99997 * 180.02562 * 23 22 21 26 26 C 1.38497 * 120.03222 * 359.45706 * 20 19 18 27 27 H 1.09000 * 109.47369 * 300.00311 * 1 2 3 28 28 H 1.09000 * 109.47341 * 60.00510 * 1 2 3 29 29 H 1.09006 * 109.47532 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47501 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46260 * 299.99573 * 3 2 1 32 32 H 1.09000 * 109.47155 * 59.99558 * 3 2 1 33 33 H 0.97003 * 120.00754 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47011 * 180.02562 * 12 2 1 35 35 H 1.08998 * 109.46868 * 59.99969 * 12 2 1 36 36 H 0.97005 * 119.99994 * 359.97438 * 13 12 2 37 37 H 1.07996 * 120.02079 * 359.97438 * 17 16 14 38 38 H 1.07998 * 119.89435 * 180.02562 * 18 17 16 39 39 H 1.07994 * 119.88706 * 180.29610 * 19 18 17 40 40 H 1.09001 * 109.47467 * 59.99826 * 22 21 20 41 41 H 1.09001 * 109.47051 * 299.99975 * 22 21 20 42 42 H 0.96695 * 116.99910 * 179.72143 * 25 23 22 43 43 H 1.07995 * 120.10284 * 180.24706 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3226 -1.1198 -4.0078 9 1 3.1484 -2.2860 -3.6035 10 1 1.1679 -1.5870 -4.8164 11 1 3.1473 -0.1861 -4.8159 12 6 2.0400 -0.7212 1.2493 13 7 1.5515 -0.0305 2.4454 14 6 1.8767 -0.4912 3.6696 15 8 2.5748 -1.4799 3.7812 16 6 1.3842 0.2062 4.8768 17 6 0.5827 1.3424 4.7514 18 6 0.1253 1.9909 5.8799 19 6 0.4537 1.5160 7.1366 20 6 1.2547 0.3903 7.2711 21 8 1.5788 -0.0687 8.5086 22 6 1.0653 0.6595 9.6257 23 6 1.5257 0.0083 10.9044 24 8 2.2179 -0.9811 10.8632 25 8 1.1617 0.5240 12.0891 26 6 1.7192 -0.2685 6.1449 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9562 -0.8901 32 1 1.6766 1.9564 0.8899 33 1 0.7083 1.1607 -3.4845 34 1 3.1299 -0.7207 1.2495 35 1 1.6766 -1.7488 1.2494 36 1 0.9941 0.7583 2.3563 37 1 0.3214 1.7139 3.7716 38 1 -0.4950 2.8695 5.7817 39 1 0.0888 2.0250 8.0164 40 1 -0.0241 0.6600 9.5895 41 1 1.4304 1.6859 9.5892 42 1 1.4780 0.0692 12.8816 43 1 2.3392 -1.1467 6.2482 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588754636.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:41 Heat of formation + Delta-G solvation = -160.062914 kcal Electronic energy + Delta-G solvation = -26072.103704 eV Core-core repulsion = 22081.953989 eV Total energy + Delta-G solvation = -3990.149715 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77439 -41.21293 -40.38479 -38.42382 -37.92715 -37.13600 -35.10133 -32.96191 -32.25484 -31.43528 -29.64353 -27.55397 -27.54428 -26.97527 -24.75230 -23.49101 -22.93751 -21.39388 -20.65246 -19.91125 -18.99874 -18.05609 -17.95342 -17.72301 -17.52567 -17.12641 -16.74980 -16.42083 -16.36749 -16.01796 -16.00824 -14.96370 -14.86343 -14.68921 -14.62932 -14.49115 -14.00670 -13.74376 -13.59808 -13.19592 -13.10986 -12.85665 -12.70655 -12.67269 -12.57666 -12.25804 -12.23113 -12.16644 -12.13290 -11.63859 -11.48746 -11.32699 -10.99308 -10.69175 -10.40183 -10.19748 -9.90967 -9.36026 -8.02248 -6.17327 -0.23246 0.35328 1.05883 1.25019 1.41332 1.45743 1.55025 1.82414 2.18785 2.47577 2.68177 2.81540 3.21346 3.67208 3.72108 3.98027 4.05219 4.07511 4.12292 4.17664 4.32976 4.41418 4.49546 4.52990 4.71296 4.87377 4.97745 5.05910 5.11259 5.15662 5.19908 5.29137 5.32521 5.36616 5.49523 5.54556 5.60938 5.68091 5.68411 6.16136 6.21340 6.23866 6.43936 6.59180 6.86127 6.88426 7.20550 7.50047 8.96896 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.038286 B = 0.002103 C = 0.002022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.158167 B =13312.265665 C =13847.058996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.051 3.949 3 C -0.121 4.121 4 C -0.527 4.527 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.145 3.855 13 N -0.699 5.699 14 C 0.544 3.456 15 O -0.590 6.590 16 C -0.106 4.106 17 C -0.120 4.120 18 C -0.073 4.073 19 C -0.167 4.167 20 C 0.116 3.884 21 O -0.324 6.324 22 C 0.058 3.942 23 C 0.487 3.513 24 O -0.547 6.547 25 O -0.498 6.498 26 C -0.116 4.116 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.261 0.739 34 H 0.040 0.960 35 H 0.040 0.960 36 H 0.410 0.590 37 H 0.144 0.856 38 H 0.177 0.823 39 H 0.180 0.820 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.436 0.564 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.773 9.596 26.376 28.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.566 4.566 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.021 3.979 13 N -0.350 5.350 14 C 0.332 3.668 15 O -0.473 6.473 16 C -0.109 4.109 17 C -0.139 4.139 18 C -0.090 4.090 19 C -0.186 4.186 20 C 0.072 3.928 21 O -0.239 6.239 22 C -0.017 4.017 23 C 0.330 3.670 24 O -0.437 6.437 25 O -0.313 6.313 26 C -0.136 4.136 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.249 0.751 37 H 0.162 0.838 38 H 0.194 0.806 39 H 0.197 0.803 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.299 0.701 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.200 8.784 25.979 28.116 hybrid contribution 0.708 -1.001 -0.735 1.430 sum -5.492 7.782 25.244 26.981 Atomic orbital electron populations 1.21681 0.96873 0.98769 1.00595 1.18379 0.93459 0.93153 0.90023 1.21683 0.97975 0.97673 1.00596 1.21274 1.31654 1.12114 0.91556 0.93897 1.25429 0.95191 0.95639 1.00871 1.69895 1.36912 1.23200 1.23568 0.85717 0.78124 0.78698 0.80309 1.20239 1.20678 1.20687 1.21366 0.97189 0.95235 0.84063 1.46010 1.52306 1.31791 1.04913 1.18809 0.79909 0.83738 0.84353 1.90724 1.40536 1.28452 1.87545 1.19569 1.01780 0.98180 0.91390 1.21568 0.96952 0.93928 1.01433 1.21370 0.97681 0.99796 0.90174 1.21888 0.99768 0.95878 1.01053 1.18691 0.96552 0.94535 0.83044 1.86052 1.71730 1.53835 1.12279 1.22277 1.02822 0.96769 0.79803 1.23012 0.76228 0.81298 0.86438 1.90806 1.37158 1.27362 1.88348 1.84393 1.71912 1.58465 1.16545 1.20346 1.02180 1.01188 0.89904 0.94239 0.91622 0.96350 0.96344 0.91631 0.94227 0.92972 0.94183 0.94183 0.75069 0.83825 0.80610 0.80252 0.83909 0.83940 0.70055 0.86758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 4 C -0.53 -27.98 8.01 25.60 0.21 -27.78 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.50 5.15 84.65 0.44 1.94 16 7 N -0.90 -47.25 9.35 21.45 0.20 -47.05 16 8 Si 0.94 42.73 29.54 68.60 2.03 44.76 16 9 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 12 C 0.15 6.33 4.50 86.38 0.39 6.72 16 13 N -0.70 -24.99 4.91 -465.96 -2.29 -27.27 16 14 C 0.54 20.21 7.77 86.79 0.67 20.89 16 15 O -0.59 -27.12 16.35 -3.87 -0.06 -27.18 16 16 C -0.11 -3.02 5.87 -20.10 -0.12 -3.14 16 17 C -0.12 -2.37 9.54 22.54 0.21 -2.15 16 18 C -0.07 -0.89 10.03 22.22 0.22 -0.67 16 19 C -0.17 -1.97 9.04 22.42 0.20 -1.76 16 20 C 0.12 2.38 6.68 22.47 0.15 2.53 16 21 O -0.32 -6.69 9.67 -73.43 -0.71 -7.40 16 22 C 0.06 0.53 5.33 71.24 0.38 0.91 16 23 C 0.49 6.61 8.40 71.24 0.60 7.21 16 24 O -0.55 -13.54 17.26 28.41 0.49 -13.05 16 25 O -0.50 -2.97 13.42 -51.46 -0.69 -3.66 16 26 C -0.12 -3.31 9.53 22.63 0.22 -3.10 16 27 H 0.04 1.41 6.86 -2.39 -0.02 1.40 16 28 H 0.06 3.18 6.07 -2.39 -0.01 3.16 16 29 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.06 3.17 6.07 -2.38 -0.01 3.16 16 32 H 0.04 1.42 6.86 -2.39 -0.02 1.40 16 33 H 0.26 13.18 8.31 -92.71 -0.77 12.41 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.41 12.30 4.19 -92.70 -0.39 11.91 16 37 H 0.14 2.43 6.40 -2.91 -0.02 2.41 16 38 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 39 H 0.18 0.37 6.28 -2.91 -0.02 0.35 16 40 H 0.14 0.33 7.64 -2.39 -0.02 0.31 16 41 H 0.14 0.33 7.67 -2.39 -0.02 0.31 16 42 H 0.44 -0.53 9.10 -74.06 -0.67 -1.21 16 43 H 0.11 3.85 7.65 -2.91 -0.02 3.83 16 Total: -1.00 -77.81 359.80 3.68 -74.14 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: 0.01 Total: 12.28 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.71 Total: -5.56 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -2.09 Total: -74.33 kcal Atomic # 8 Polarization: -50.31 SS G_CDS: -0.97 Total: -51.28 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -77.81 3.68 -74.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588754636.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.927 kcal (2) G-P(sol) polarization free energy of solvation -77.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds