Wall clock time and date at job start Tue Mar 31 2020 13:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47422 * 2 1 4 4 C 1.53004 * 109.46938 * 240.00037 * 2 1 3 5 5 C 1.50697 * 109.46829 * 60.00310 * 4 2 1 6 6 H 1.08001 * 120.00352 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00283 * 179.97438 * 5 4 2 8 8 N 1.31514 * 119.99456 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00728 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46925 * 0.02562 * 9 7 5 11 11 H 1.48491 * 109.47379 * 119.99635 * 9 7 5 12 12 H 1.48496 * 109.47609 * 240.00396 * 9 7 5 13 13 C 1.53003 * 109.47226 * 120.00249 * 2 1 3 14 14 N 1.46503 * 109.47114 * 300.00084 * 13 2 1 15 15 C 1.34767 * 119.99894 * 179.97438 * 14 13 2 16 16 O 1.21598 * 120.00384 * 359.97438 * 15 14 13 17 17 C 1.47501 * 119.99983 * 180.02562 * 15 14 13 18 18 C 1.37861 * 126.75587 * 0.15476 * 17 15 14 19 19 O 1.33598 * 108.40864 * 180.23864 * 18 17 15 20 20 C 1.34901 * 109.88504 * 359.76710 * 19 18 17 21 21 C 1.41671 * 125.68941 * 179.97438 * 20 19 18 22 22 C 1.35670 * 120.00102 * 6.61705 * 21 20 19 23 23 C 1.41365 * 119.99904 * 29.73668 * 22 21 20 24 24 O 1.21698 * 119.99998 * 8.30773 * 23 22 21 25 25 O 1.34990 * 120.00066 * 188.31103 * 23 22 21 26 26 C 1.36512 * 108.62203 * 359.97438 * 20 19 18 27 27 H 1.09002 * 109.46605 * 300.00155 * 1 2 3 28 28 H 1.09005 * 109.47242 * 59.99195 * 1 2 3 29 29 H 1.08998 * 109.47314 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.47148 * 179.97438 * 3 2 1 31 31 H 1.08993 * 109.47233 * 300.00409 * 3 2 1 32 32 H 1.09004 * 109.46837 * 60.00323 * 3 2 1 33 33 H 1.08999 * 109.47188 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47187 * 300.00162 * 4 2 1 35 35 H 0.97003 * 120.00171 * 179.97438 * 8 7 5 36 36 H 1.08994 * 109.47250 * 179.97438 * 13 2 1 37 37 H 1.09002 * 109.46359 * 59.99643 * 13 2 1 38 38 H 0.96998 * 119.99511 * 359.97438 * 14 13 2 39 39 H 1.08001 * 125.79939 * 359.97438 * 18 17 15 40 40 H 1.07999 * 120.00251 * 186.61611 * 21 20 19 41 41 H 1.08000 * 120.00213 * 209.74295 * 22 21 20 42 42 H 0.96694 * 114.00084 * 180.02562 * 25 23 22 43 43 H 1.08004 * 126.70127 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8711 -0.4814 -3.7320 8 7 2.6279 -1.5501 -3.8527 9 14 1.2479 0.3988 -5.2572 10 1 0.4225 1.5653 -4.8530 11 1 2.4025 0.8664 -6.0654 12 1 0.4235 -0.5350 -6.0656 13 6 2.0400 -0.7213 1.2492 14 7 1.5517 -0.0308 2.4454 15 6 1.8769 -0.4916 3.6694 16 8 2.5752 -1.4807 3.7810 17 6 1.3847 0.2034 4.8738 18 6 0.5865 1.3268 4.9098 19 8 0.3669 1.6475 6.1880 20 6 0.9919 0.7665 6.9960 21 6 0.9812 0.7926 8.4125 22 6 0.1933 1.6810 9.0687 23 6 -1.0172 2.1186 8.4842 24 8 -1.4284 1.5897 7.4682 25 8 -1.7169 3.1231 9.0530 26 6 1.6364 -0.1543 6.2213 27 1 -0.3632 0.5139 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 3.1300 -0.7209 -1.2496 34 1 1.6766 -1.7489 -1.2493 35 1 2.8623 -1.8815 -4.7337 36 1 3.1300 -0.7217 1.2490 37 1 1.6766 -1.7489 1.2491 38 1 0.9943 0.7581 2.3564 39 1 0.2071 1.8599 4.0506 40 1 1.6002 0.1052 8.9699 41 1 0.4909 2.0540 10.0376 42 1 -2.5300 3.3517 8.5823 43 1 2.2270 -0.9895 6.5679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588757824.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:14 Heat of formation + Delta-G solvation = -101.164666 kcal Electronic energy + Delta-G solvation = -26277.103714 eV Core-core repulsion = 22289.508019 eV Total energy + Delta-G solvation = -3987.595695 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.00861 -40.47050 -39.43622 -37.10556 -36.52308 -34.69735 -33.75216 -33.22567 -32.08270 -29.69622 -27.18078 -26.55401 -26.41791 -25.35984 -23.83262 -22.48879 -21.87239 -20.87574 -19.57856 -18.68780 -18.27418 -17.80917 -16.70651 -16.41000 -16.33734 -16.11471 -15.82421 -15.43262 -14.97342 -14.61120 -14.54767 -14.46737 -13.59260 -13.57996 -13.33689 -13.23040 -12.96521 -12.76946 -12.58180 -12.20366 -12.08863 -11.84804 -11.20343 -11.05478 -10.97129 -10.85995 -10.74371 -10.67865 -10.44385 -10.27146 -10.05848 -10.00413 -9.91612 -9.22198 -8.94417 -8.80950 -8.38585 -8.38077 -6.01935 -4.03267 -0.24432 1.26548 2.00026 2.52731 2.74474 3.09764 3.28824 3.31508 3.37249 3.39447 3.40033 4.24737 4.35212 4.43482 4.55928 4.77519 4.92302 5.12661 5.28442 5.33644 5.39452 5.48469 5.58551 5.58608 5.68073 5.72471 5.95524 6.11751 6.12684 6.17661 6.25637 6.34987 6.49794 6.59179 6.62606 6.70653 7.01983 7.04016 7.08767 7.59155 7.61527 7.66431 7.73689 7.96653 8.32941 8.38984 9.01668 9.59997 11.09521 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.027539 B = 0.002217 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.511732 B =12627.260363 C =13366.923920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.073 4.073 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.129 3.871 14 N -0.716 5.716 15 C 0.579 3.421 16 O -0.540 6.540 17 C -0.236 4.236 18 C 0.050 3.950 19 O -0.130 6.130 20 C -0.033 4.033 21 C 0.049 3.951 22 C -0.232 4.232 23 C 0.504 3.496 24 O -0.505 6.505 25 O -0.513 6.513 26 C -0.090 4.090 27 H 0.027 0.973 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.019 0.981 34 H 0.019 0.981 35 H 0.259 0.741 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.395 0.605 39 H 0.214 0.786 40 H 0.170 0.830 41 H 0.152 0.848 42 H 0.407 0.593 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.366 8.746 26.051 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.533 5.533 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.006 3.994 14 N -0.367 5.367 15 C 0.366 3.634 16 O -0.418 6.418 17 C -0.241 4.241 18 C -0.024 4.024 19 O -0.023 6.023 20 C -0.082 4.082 21 C 0.031 3.969 22 C -0.251 4.251 23 C 0.351 3.649 24 O -0.395 6.395 25 O -0.323 6.323 26 C -0.110 4.110 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.231 0.769 39 H 0.231 0.769 40 H 0.187 0.813 41 H 0.170 0.830 42 H 0.263 0.737 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -4.694 7.924 26.059 27.638 hybrid contribution -1.046 0.809 -1.383 1.913 sum -5.740 8.732 24.676 26.797 Atomic orbital electron populations 1.21773 0.95241 1.01282 1.00210 1.20918 0.95492 0.95867 0.95038 1.21770 1.00639 0.95864 1.00197 1.19099 0.96411 0.95263 0.89428 1.21208 1.31121 1.12079 0.90482 0.92204 1.25022 0.95324 0.95098 0.99128 1.69974 1.36929 1.23065 1.23357 0.86585 0.78598 0.79660 0.83430 1.19816 1.21139 1.21130 1.21679 0.99071 0.96104 0.82537 1.46056 1.53102 1.31833 1.05713 1.17268 0.80239 0.83708 0.82208 1.90787 1.38313 1.26018 1.86706 1.20798 1.07453 1.00477 0.95326 1.25138 0.96016 0.95735 0.85477 1.84187 1.56424 1.46049 1.15594 1.19387 1.02388 0.94733 0.91668 1.20874 0.94904 0.92689 0.88455 1.21294 0.95579 1.03309 1.04952 1.19625 0.86168 0.77529 0.81617 1.91010 1.70014 1.55099 1.23425 1.85077 1.39523 1.50984 1.56712 1.22129 0.99224 0.98576 0.91083 0.95362 0.91331 0.93250 0.93260 0.91325 0.95390 0.96272 0.96274 0.93077 0.91542 0.91556 0.76941 0.76939 0.81314 0.83030 0.73659 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.34 0.54 -154.50 -0.08 -1.43 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.86 16 4 C 0.04 0.86 4.04 -27.88 -0.11 0.74 16 5 C -0.51 -13.37 7.65 -34.44 -0.26 -13.64 16 6 H 0.06 1.51 5.68 -52.49 -0.30 1.21 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 13 C 0.13 2.23 4.56 -4.04 -0.02 2.22 16 14 N -0.72 -10.25 4.95 -61.36 -0.30 -10.56 16 15 C 0.58 8.90 7.82 -12.49 -0.10 8.80 16 16 O -0.54 -10.33 16.93 5.28 0.09 -10.24 16 17 C -0.24 -2.91 6.16 -104.95 -0.65 -3.56 16 18 C 0.05 0.51 11.64 30.59 0.36 0.86 16 19 O -0.13 -1.44 7.21 -18.83 -0.14 -1.58 16 20 C -0.03 -0.33 6.00 -38.89 -0.23 -0.56 16 21 C 0.05 0.32 9.77 -39.19 -0.38 -0.06 16 22 C -0.23 -1.58 9.89 -39.31 -0.39 -1.97 16 23 C 0.50 4.60 7.51 31.92 0.24 4.84 16 24 O -0.50 -6.20 13.80 -27.65 -0.38 -6.58 16 25 O -0.51 -3.58 13.54 -41.29 -0.56 -4.14 16 26 C -0.09 -0.98 10.64 -38.90 -0.41 -1.39 16 27 H 0.03 0.38 6.86 -51.93 -0.36 0.03 16 28 H 0.07 1.26 6.62 -51.93 -0.34 0.92 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.07 1.26 6.62 -51.93 -0.34 0.91 16 32 H 0.03 0.37 6.86 -51.93 -0.36 0.02 16 33 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 38 H 0.40 4.61 5.11 -40.82 -0.21 4.40 16 39 H 0.21 1.40 7.46 -52.49 -0.39 1.00 16 40 H 0.17 0.45 8.06 -52.49 -0.42 0.02 16 41 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 42 H 0.41 1.36 8.98 45.56 0.41 1.77 16 43 H 0.17 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -35.53 363.87 -6.47 -42.00 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -4.83 Total: 2.55 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -1.54 Total: -7.46 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.43 Total: -36.05 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.99 Total: -22.55 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.53 -6.47 -42.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588757824.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.169 kcal (2) G-P(sol) polarization free energy of solvation -35.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds