Wall clock time and date at job start Tue Mar 31 2020 12:52:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38280 * 119.94567 * 2 1 4 4 C 1.38132 * 120.05798 * 179.97438 * 3 2 1 5 5 C 1.38747 * 119.94146 * 0.02562 * 4 3 2 6 6 O 1.35902 * 120.05966 * 180.02562 * 5 4 3 7 7 C 1.42912 * 116.99501 * 353.93242 * 6 5 4 8 8 C 1.50694 * 109.47065 * 184.37569 * 7 6 5 9 9 O 1.21298 * 120.00165 * 5.11100 * 8 7 6 10 10 N 1.34770 * 119.99961 * 185.11494 * 8 7 6 11 11 C 1.37100 * 120.00185 * 354.70546 * 10 8 7 12 12 H 1.07997 * 119.99781 * 323.39500 * 11 10 8 13 13 C 1.38949 * 120.00082 * 143.39618 * 11 10 8 14 14 N 1.31406 * 120.00243 * 159.62630 * 13 11 10 15 15 Si 1.86798 * 119.99984 * 339.61689 * 13 11 10 16 16 H 1.48504 * 109.47118 * 95.52406 * 15 13 11 17 17 H 1.48504 * 109.47464 * 215.52595 * 15 13 11 18 18 H 1.48500 * 109.47259 * 335.52706 * 15 13 11 19 19 C 1.46501 * 120.00143 * 174.70608 * 10 8 7 20 20 C 1.52997 * 109.47372 * 89.99895 * 19 10 8 21 21 C 1.50697 * 109.47398 * 180.02562 * 20 19 10 22 22 O 1.20828 * 120.00153 * 359.97438 * 21 20 19 23 23 O 1.34233 * 119.99839 * 180.02562 * 21 20 19 24 24 C 1.38716 * 119.89142 * 0.27550 * 5 4 3 25 25 C 1.50700 * 120.02864 * 179.72736 * 24 5 4 26 26 C 1.38166 * 119.94256 * 359.40438 * 24 5 4 27 27 H 1.08997 * 109.47492 * 89.99883 * 1 2 3 28 28 H 1.09004 * 109.46931 * 210.00146 * 1 2 3 29 29 H 1.08995 * 109.46783 * 329.99570 * 1 2 3 30 30 H 1.08004 * 119.97435 * 0.02562 * 3 2 1 31 31 H 1.07996 * 120.02928 * 179.97438 * 4 3 2 32 32 H 1.08999 * 109.46317 * 304.37387 * 7 6 5 33 33 H 1.08997 * 109.47152 * 64.36977 * 7 6 5 34 34 H 0.96995 * 120.00294 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.47322 * 210.00126 * 19 10 8 36 36 H 1.09005 * 109.46784 * 330.00045 * 19 10 8 37 37 H 1.09001 * 109.47086 * 300.00376 * 20 19 10 38 38 H 1.08996 * 109.47009 * 60.00041 * 20 19 10 39 39 H 0.96700 * 116.99722 * 179.97438 * 23 21 20 40 40 H 1.09000 * 109.47256 * 90.00360 * 25 24 5 41 41 H 1.09003 * 109.46885 * 209.99622 * 25 24 5 42 42 H 1.08995 * 109.47181 * 329.99269 * 25 24 5 43 43 H 1.07998 * 119.97904 * 180.31844 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.1982 0.0000 4 6 3.5786 1.2009 0.0005 5 6 4.2734 0.0000 0.0005 6 8 5.6325 -0.0002 0.0016 7 6 6.2814 1.2661 -0.1319 8 6 7.7717 1.0602 -0.2180 9 8 8.2272 -0.0631 -0.2632 10 7 8.5985 2.1241 -0.2447 11 6 8.0817 3.3926 -0.3031 12 1 7.1928 3.5872 -0.8847 13 6 8.7017 4.4278 0.3858 14 7 8.4802 5.6750 0.0363 15 14 9.8500 4.0466 1.8090 16 1 11.2522 4.0208 1.3205 17 1 9.7087 5.0931 2.8531 18 1 9.5021 2.7227 2.3848 19 6 10.0496 1.9252 -0.2112 20 6 10.5803 1.7999 -1.6407 21 6 12.0729 1.5946 -1.6062 22 8 12.6528 1.5533 -0.5470 23 8 12.7583 1.4588 -2.7524 24 6 3.5787 -1.2007 -0.0058 25 6 4.3303 -2.5068 -0.0120 26 6 2.1971 -1.1980 0.0004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8899 0.5139 30 1 1.6559 2.1328 0.0004 31 1 4.1172 2.1370 0.0001 32 1 5.9300 1.7606 -1.0375 33 1 6.0496 1.8862 0.7339 34 1 8.9127 6.3977 0.5175 35 1 10.5219 2.7768 0.2784 36 1 10.2788 1.0147 0.3426 37 1 10.1080 0.9482 -2.1303 38 1 10.3511 2.7103 -2.1944 39 1 13.7138 1.3296 -2.6797 40 1 4.5111 -2.8270 1.0141 41 1 3.7403 -3.2631 -0.5299 42 1 5.2831 -2.3754 -0.5249 43 1 1.6556 -2.1325 0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600469714.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:47 Heat of formation + Delta-G solvation = -155.542249 kcal Electronic energy + Delta-G solvation = -26867.543352 eV Core-core repulsion = 22877.589667 eV Total energy + Delta-G solvation = -3989.953684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60738 -41.28197 -40.48063 -38.53901 -37.32696 -36.93495 -34.30654 -34.12710 -32.83631 -32.43992 -29.65664 -28.07410 -27.06110 -26.91087 -25.81149 -23.16121 -22.27095 -21.55241 -21.06694 -19.47460 -19.06905 -18.84293 -18.12718 -17.86816 -17.18273 -17.10726 -16.92044 -16.56986 -15.93678 -15.70842 -15.51126 -15.17213 -14.90276 -14.71062 -14.54032 -14.25009 -14.12790 -14.06255 -13.92525 -13.64388 -13.47918 -13.26745 -13.04073 -12.82688 -12.67188 -12.64378 -12.62284 -12.18900 -12.17075 -11.85533 -11.76229 -11.72529 -11.65551 -11.21099 -10.60946 -9.97424 -9.72969 -8.89674 -8.61822 -6.25681 0.40259 0.48206 1.09614 1.13963 1.28379 1.36380 1.61529 1.65675 2.09500 2.15602 2.78813 2.80905 2.96699 3.72893 3.76692 3.83730 3.91019 3.98893 4.09742 4.18009 4.24603 4.30642 4.41151 4.43314 4.50232 4.59222 4.61625 4.74011 4.79450 4.81893 4.84769 4.94492 5.05043 5.18552 5.24167 5.37989 5.43694 5.50930 5.55146 5.71462 5.89729 5.95830 6.10214 6.45236 6.82648 6.92177 7.22268 7.56868 8.50653 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015287 B = 0.003371 C = 0.002950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.215420 B = 8304.695061 C = 9489.991595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.126 4.126 3 C -0.093 4.093 4 C -0.212 4.212 5 C 0.095 3.905 6 O -0.315 6.315 7 C 0.072 3.928 8 C 0.480 3.520 9 O -0.598 6.598 10 N -0.463 5.463 11 C -0.351 4.351 12 H 0.103 0.897 13 C 0.050 3.950 14 N -0.877 5.877 15 Si 0.907 3.093 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.272 1.272 19 C 0.113 3.887 20 C -0.119 4.119 21 C 0.496 3.504 22 O -0.552 6.552 23 O -0.504 6.504 24 C -0.129 4.129 25 C -0.102 4.102 26 C -0.086 4.086 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.283 0.717 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.429 0.571 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.048 0.952 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.411 -7.912 -2.956 12.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.126 4.126 3 C -0.110 4.110 4 C -0.231 4.231 5 C 0.050 3.950 6 O -0.228 6.228 7 C -0.005 4.005 8 C 0.269 3.731 9 O -0.483 6.483 10 N -0.185 5.185 11 C -0.478 4.478 12 H 0.120 0.880 13 C -0.157 4.157 14 N -0.513 5.513 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.205 1.205 18 H -0.196 1.196 19 C -0.010 4.010 20 C -0.157 4.157 21 C 0.340 3.660 22 O -0.443 6.443 23 O -0.317 6.317 24 C -0.130 4.130 25 C -0.158 4.158 26 C -0.104 4.104 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.161 0.839 31 H 0.148 0.852 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.291 0.709 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.067 0.933 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.273 -8.353 -2.692 12.767 hybrid contribution 1.679 0.655 0.830 1.984 sum -7.594 -7.698 -1.862 10.972 Atomic orbital electron populations 1.20748 0.88670 1.03638 1.03013 1.20209 0.97862 0.92444 1.02134 1.21111 0.92551 0.99114 0.98272 1.21486 0.96489 0.96886 1.08225 1.19282 0.81781 0.95124 0.98833 1.86056 1.17099 1.31507 1.88137 1.22171 0.89925 0.84349 1.04086 1.20330 0.88862 0.84119 0.79740 1.90578 1.78379 1.24416 1.54929 1.43643 1.03453 1.05876 1.65559 1.19074 1.15204 0.82047 1.31444 0.87982 1.25620 0.97783 0.94701 0.97618 1.69747 1.42882 0.99669 1.38972 0.86450 0.80042 0.78510 0.81514 1.19494 1.20529 1.19646 1.21398 0.82065 1.01489 0.96061 1.21571 0.87521 1.06867 0.99790 1.23278 0.91001 0.70624 0.81107 1.90700 1.71893 1.48461 1.33284 1.84501 1.28905 1.83604 1.34723 1.19580 0.94324 0.93398 1.05711 1.20587 0.99499 0.93327 1.02407 1.21046 0.91386 0.99188 0.98760 0.90464 0.90427 0.90891 0.83871 0.85229 0.88574 0.88716 0.90644 0.91662 0.91256 0.86606 0.85931 0.70888 0.91334 0.89304 0.93313 0.82819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.01 71.24 0.71 -0.72 16 2 C -0.13 -2.70 5.88 -19.85 -0.12 -2.82 16 3 C -0.09 -2.25 9.69 22.25 0.22 -2.03 16 4 C -0.21 -6.36 9.04 22.37 0.20 -6.16 16 5 C 0.09 3.20 6.65 22.51 0.15 3.35 16 6 O -0.31 -12.52 8.72 -73.46 -0.64 -13.16 16 7 C 0.07 2.85 3.93 71.23 0.28 3.13 16 8 C 0.48 21.95 7.69 87.66 0.67 22.62 16 9 O -0.60 -30.13 16.14 15.90 0.26 -29.87 16 10 N -0.46 -21.20 2.20 -635.54 -1.40 -22.60 16 11 C -0.35 -16.80 9.02 84.04 0.76 -16.04 16 12 H 0.10 4.98 7.36 -2.91 -0.02 4.96 16 13 C 0.05 2.47 5.34 84.93 0.45 2.92 16 14 N -0.88 -45.12 13.96 21.66 0.30 -44.82 16 15 Si 0.91 41.29 24.85 68.60 1.70 43.00 16 16 H -0.27 -12.20 6.71 99.48 0.67 -11.53 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 C 0.11 4.94 3.45 86.38 0.30 5.24 16 20 C -0.12 -4.30 6.13 29.85 0.18 -4.12 16 21 C 0.50 16.55 8.33 71.23 0.59 17.14 16 22 O -0.55 -21.84 16.74 21.96 0.37 -21.47 16 23 O -0.50 -12.28 13.42 -51.45 -0.69 -12.97 16 24 C -0.13 -3.73 5.89 -19.77 -0.12 -3.85 16 25 C -0.10 -2.67 9.79 71.24 0.70 -1.97 16 26 C -0.09 -1.94 9.35 22.26 0.21 -1.74 16 27 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.08 0.86 8.08 -2.38 -0.02 0.84 16 29 H 0.07 0.89 8.08 -2.39 -0.02 0.87 16 30 H 0.14 2.77 8.06 -2.91 -0.02 2.74 16 31 H 0.13 3.85 6.33 -2.91 -0.02 3.83 16 32 H 0.10 3.50 7.32 -2.39 -0.02 3.48 16 33 H 0.10 3.62 7.55 -2.39 -0.02 3.60 16 34 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 35 H 0.07 3.00 2.95 -2.39 -0.01 2.99 16 36 H 0.07 3.18 7.46 -2.38 -0.02 3.16 16 37 H 0.12 4.03 8.14 -2.39 -0.02 4.01 16 38 H 0.12 4.28 8.14 -2.39 -0.02 4.26 16 39 H 0.43 6.08 9.10 -74.06 -0.67 5.40 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.09 1.76 8.09 -2.39 -0.02 1.74 16 42 H 0.05 1.53 7.53 -2.39 -0.02 1.51 16 43 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -66.20 364.02 5.43 -60.77 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: 0.34 Total: 26.17 kcal Atomic # 6 Polarization: 9.76 SS G_CDS: 5.19 Total: 14.95 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: -1.10 Total: -67.42 kcal Atomic # 8 Polarization: -76.76 SS G_CDS: -0.71 Total: -77.47 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 1.70 Total: 43.00 kcal Total: -66.20 5.43 -60.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600469714.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.770 kcal (2) G-P(sol) polarization free energy of solvation -66.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds