Wall clock time and date at job start Tue Mar 31 2020 13:44:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46693 * 2 1 4 4 O 1.42897 * 109.47366 * 59.07692 * 3 2 1 5 5 C 1.53000 * 109.46882 * 179.07583 * 3 2 1 6 6 C 1.50699 * 109.47136 * 175.83716 * 5 3 2 7 7 O 1.21293 * 120.00029 * 4.33557 * 6 5 3 8 8 N 1.34777 * 120.00123 * 184.32901 * 6 5 3 9 9 C 1.37101 * 119.99739 * 0.02562 * 8 6 5 10 10 H 1.07999 * 120.00126 * 20.90895 * 9 8 6 11 11 C 1.38957 * 119.99677 * 200.90780 * 9 8 6 12 12 N 1.31407 * 120.00169 * 9.88939 * 11 9 8 13 13 Si 1.86800 * 119.99765 * 189.88762 * 11 9 8 14 14 H 1.48497 * 109.47295 * 90.00099 * 13 11 9 15 15 H 1.48506 * 109.46872 * 210.00177 * 13 11 9 16 16 H 1.48497 * 109.47323 * 329.99864 * 13 11 9 17 17 C 1.46496 * 120.00287 * 180.02562 * 8 6 5 18 18 C 1.50707 * 109.47377 * 84.06387 * 17 8 6 19 19 O 1.20829 * 119.99624 * 0.02562 * 18 17 8 20 20 O 1.34229 * 119.99930 * 180.02562 * 18 17 8 21 21 C 1.50699 * 109.46780 * 299.06977 * 3 2 1 22 22 C 1.38236 * 119.99472 * 90.00939 * 21 3 2 23 23 C 1.38235 * 119.99923 * 180.02562 * 22 21 3 24 24 C 1.38231 * 120.00140 * 359.95396 * 23 22 21 25 25 C 1.38241 * 119.99947 * 0.27823 * 24 23 22 26 26 C 1.38233 * 120.00555 * 270.02253 * 21 3 2 27 27 H 1.09006 * 109.46997 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47269 * 300.00052 * 1 2 3 29 29 H 1.09001 * 109.47305 * 60.00803 * 1 2 3 30 30 H 1.08993 * 109.47363 * 239.99843 * 2 1 3 31 31 H 1.09006 * 109.47010 * 119.99561 * 2 1 3 32 32 H 0.96702 * 113.99678 * 180.02562 * 4 3 2 33 33 H 1.09005 * 109.47352 * 295.84327 * 5 3 2 34 34 H 1.09001 * 109.47184 * 55.84051 * 5 3 2 35 35 H 0.96995 * 120.00352 * 179.97438 * 12 11 9 36 36 H 1.08997 * 109.47319 * 204.06755 * 17 8 6 37 37 H 1.09005 * 109.47014 * 324.07221 * 17 8 6 38 38 H 0.96703 * 116.99666 * 180.02562 * 20 18 17 39 39 H 1.08005 * 120.00309 * 359.97438 * 22 21 3 40 40 H 1.08007 * 120.00249 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.00693 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.00228 * 179.72924 * 25 24 23 43 43 H 1.07998 * 120.00064 * 0.02562 * 26 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 1.5459 2.1224 1.1557 5 6 3.5697 1.4427 0.0233 6 6 4.0736 2.8592 -0.0798 7 8 3.2881 3.7835 -0.0844 8 7 5.3970 3.0991 -0.1668 9 6 6.2847 2.0543 -0.1621 10 1 5.9517 1.0615 -0.4261 11 6 7.6130 2.2730 0.1825 12 7 7.9788 3.4291 0.6888 13 14 8.8787 0.9233 -0.0740 14 1 9.4689 1.0494 -1.4308 15 1 9.9508 1.0498 0.9458 16 1 8.2228 -0.4023 0.0592 17 6 5.8868 4.4761 -0.2665 18 6 5.9959 5.0717 1.1136 19 8 5.6956 4.4132 2.0811 20 8 6.4265 6.3337 1.2678 21 6 1.5564 2.1462 -1.2418 22 6 0.3482 2.8177 -1.2296 23 6 -0.0957 3.4627 -2.3688 24 6 0.6691 3.4370 -3.5200 25 6 1.8751 2.7614 -3.5337 26 6 2.3208 2.1198 -2.3933 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8901 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8299 3.0445 1.2209 33 1 3.9190 0.9997 0.9560 34 1 3.9459 0.8611 -0.8184 35 1 8.9059 3.5816 0.9296 36 1 6.8675 4.4794 -0.7422 37 1 5.1916 5.0668 -0.8631 38 1 6.4801 6.6717 2.1722 39 1 -0.2495 2.8378 -0.3302 40 1 -1.0399 3.9871 -2.3594 41 1 0.3226 3.9412 -4.4100 42 1 2.4705 2.7375 -4.4344 43 1 3.2645 1.5947 -2.4031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605106970.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:17 Heat of formation + Delta-G solvation = -143.174010 kcal Electronic energy + Delta-G solvation = -28936.380598 eV Core-core repulsion = 24946.963241 eV Total energy + Delta-G solvation = -3989.417357 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.15891 -39.09422 -37.95024 -36.63501 -35.09437 -34.53491 -32.92493 -31.62712 -31.03366 -30.19332 -29.44601 -27.52266 -25.01794 -23.98349 -22.41798 -21.94972 -20.92389 -19.62931 -19.25603 -17.32299 -17.11245 -16.85717 -16.39408 -15.69624 -15.55055 -14.78068 -14.75630 -14.39934 -14.34195 -14.17116 -14.00571 -13.85550 -13.54726 -13.15195 -12.94559 -12.61045 -12.17084 -12.10600 -11.84160 -11.57811 -11.47139 -11.45747 -11.24419 -11.01746 -11.00211 -10.82916 -10.69595 -10.66054 -10.49590 -10.26807 -10.13926 -9.65005 -9.47591 -9.10893 -8.73876 -8.47966 -8.19481 -7.98457 -6.55346 -4.13066 1.78179 1.82614 3.02878 3.12351 3.15364 3.57108 3.71096 3.97242 4.19426 4.25624 4.59601 4.70687 4.97026 5.00367 5.18571 5.31708 5.36006 5.43039 5.46622 5.60287 5.78717 5.85338 5.94739 5.99631 6.09094 6.11264 6.27174 6.29638 6.37928 6.40013 6.42998 6.52229 6.58059 6.62090 6.73282 6.86186 6.88572 7.04577 7.23571 7.41058 7.51879 7.63690 8.14463 8.28160 8.90557 9.17579 9.29117 9.68741 10.51186 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.004979 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.544008 B = 5622.266831 C = 6161.328999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.106 4.106 3 C 0.191 3.809 4 O -0.560 6.560 5 C -0.149 4.149 6 C 0.476 3.524 7 O -0.596 6.596 8 N -0.428 5.428 9 C -0.332 4.332 10 H 0.103 0.897 11 C 0.037 3.963 12 N -0.880 5.880 13 Si 0.932 3.068 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.269 1.269 17 C 0.159 3.841 18 C 0.502 3.498 19 O -0.514 6.514 20 O -0.536 6.536 21 C -0.067 4.067 22 C -0.099 4.099 23 C -0.127 4.127 24 C -0.131 4.131 25 C -0.121 4.121 26 C -0.108 4.108 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.390 0.610 33 H 0.096 0.904 34 H 0.089 0.911 35 H 0.273 0.727 36 H 0.127 0.873 37 H 0.077 0.923 38 H 0.389 0.611 39 H 0.121 0.879 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.115 0.885 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.033 -2.376 -5.535 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.143 4.143 3 C 0.149 3.851 4 O -0.371 6.371 5 C -0.189 4.189 6 C 0.266 3.734 7 O -0.483 6.483 8 N -0.147 5.147 9 C -0.459 4.459 10 H 0.120 0.880 11 C -0.167 4.167 12 N -0.519 5.519 13 Si 0.758 3.242 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.193 1.193 17 C 0.033 3.967 18 C 0.343 3.657 19 O -0.400 6.400 20 O -0.346 6.346 21 C -0.068 4.068 22 C -0.117 4.117 23 C -0.145 4.145 24 C -0.149 4.149 25 C -0.139 4.139 26 C -0.127 4.127 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.243 0.757 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.095 0.905 38 H 0.245 0.755 39 H 0.139 0.861 40 H 0.131 0.869 41 H 0.130 0.870 42 H 0.133 0.867 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.582 -2.757 -5.492 10.555 hybrid contribution 1.495 0.227 0.550 1.609 sum -7.087 -2.529 -4.942 9.002 Atomic orbital electron populations 1.21744 0.95359 1.00806 1.02616 1.21486 0.96831 0.93558 1.02422 1.19709 0.90746 0.91393 0.83222 1.86287 1.76228 1.30948 1.43614 1.22223 0.95160 0.96925 1.04574 1.20065 0.82572 0.90373 0.80363 1.90478 1.55337 1.45897 1.56558 1.43315 1.04409 1.04558 1.62407 1.19671 0.89829 0.90070 1.46351 0.87973 1.25283 0.98709 0.97731 0.94966 1.69674 1.18732 1.23632 1.39822 0.85842 0.79847 0.80395 0.78089 1.20174 1.20841 1.19337 1.20434 1.02343 0.83540 0.90357 1.23679 0.70914 0.77538 0.93552 1.90555 1.46961 1.60495 1.42012 1.84528 1.81161 1.32413 1.36534 1.20257 0.94282 0.97151 0.95081 1.20857 0.96001 0.97016 0.97849 1.21013 0.99744 1.00195 0.93524 1.20987 0.95543 1.00411 0.97988 1.21005 0.96378 0.98447 0.98070 1.21026 0.99041 0.99774 0.92814 0.93387 0.91896 0.92503 0.90941 0.90992 0.75730 0.88526 0.89285 0.91574 0.85497 0.90514 0.75474 0.86123 0.86875 0.86970 0.86726 0.86365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.19 37.16 0.34 -1.58 16 2 C -0.11 -1.50 5.19 -26.73 -0.14 -1.64 16 3 C 0.19 3.25 0.66 -91.77 -0.06 3.19 16 4 O -0.56 -10.47 11.24 -51.96 -0.58 -11.05 16 5 C -0.15 -2.82 3.05 -27.88 -0.09 -2.91 16 6 C 0.48 10.72 6.17 -10.99 -0.07 10.65 16 7 O -0.60 -14.12 12.42 -11.18 -0.14 -14.26 16 8 N -0.43 -10.24 2.18 -116.09 -0.25 -10.49 16 9 C -0.33 -7.95 9.15 -14.93 -0.14 -8.09 16 10 H 0.10 2.27 6.44 -52.49 -0.34 1.93 16 11 C 0.04 0.89 5.13 -17.47 -0.09 0.80 16 12 N -0.88 -22.20 8.81 55.50 0.49 -21.71 16 13 Si 0.93 18.84 29.56 -169.99 -5.03 13.81 16 14 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 15 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 17 C 0.16 3.72 5.13 -5.19 -0.03 3.69 16 18 C 0.50 12.10 6.42 36.01 0.23 12.33 16 19 O -0.51 -14.06 16.80 -18.75 -0.32 -14.37 16 20 O -0.54 -10.77 13.42 -39.25 -0.53 -11.29 16 21 C -0.07 -1.13 2.60 -104.63 -0.27 -1.41 16 22 C -0.10 -1.59 7.54 -39.58 -0.30 -1.88 16 23 C -0.13 -1.84 10.05 -39.58 -0.40 -2.24 16 24 C -0.13 -1.86 10.05 -39.58 -0.40 -2.26 16 25 C -0.12 -1.83 10.05 -39.58 -0.40 -2.22 16 26 C -0.11 -1.81 8.26 -39.58 -0.33 -2.13 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.86 7.66 -51.93 -0.40 0.47 16 29 H 0.06 0.75 6.19 -51.93 -0.32 0.43 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.39 7.90 6.75 45.56 0.31 8.21 16 33 H 0.10 1.92 8.14 -51.93 -0.42 1.49 16 34 H 0.09 1.54 6.05 -51.93 -0.31 1.22 16 35 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 36 H 0.13 3.00 6.31 -51.93 -0.33 2.67 16 37 H 0.08 1.71 7.61 -51.93 -0.40 1.31 16 38 H 0.39 6.11 9.10 45.56 0.41 6.53 16 39 H 0.12 1.87 7.45 -52.48 -0.39 1.48 16 40 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 41 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.11 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.12 1.94 6.21 -52.49 -0.33 1.62 16 LS Contribution 349.21 15.07 5.26 5.26 Total: -1.00 -30.10 349.21 -7.40 -37.49 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: -4.18 Total: 22.29 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -2.12 Total: 4.32 kcal Atomic # 7 Polarization: -32.44 SS G_CDS: 0.24 Total: -32.20 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -1.57 Total: -50.97 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.10 -7.40 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605106970.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.681 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds