Wall clock time and date at job start Tue Mar 31 2020 12:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00115 * 2 1 4 4 H 1.48496 * 109.47187 * 270.00156 * 3 2 1 5 5 H 1.48503 * 109.47247 * 30.00270 * 3 2 1 6 6 H 1.48505 * 109.46904 * 150.00062 * 3 2 1 7 7 C 1.37877 * 119.99799 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47362 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.47568 * 179.97438 * 10 9 7 12 12 C 1.50694 * 109.47406 * 179.97438 * 11 10 9 13 13 O 1.21284 * 120.00122 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99874 * 180.02562 * 12 11 10 15 15 C 1.46503 * 119.99938 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47040 * 179.97438 * 15 14 12 17 17 O 1.42899 * 109.47265 * 64.99922 * 16 15 14 18 18 C 1.35694 * 117.00093 * 179.97438 * 17 16 15 19 19 C 1.39021 * 119.90499 * 0.27444 * 18 17 16 20 20 C 1.37679 * 120.09068 * 180.28089 * 19 18 17 21 21 C 1.39794 * 119.90398 * 359.43972 * 20 19 18 22 22 C 1.47473 * 120.08904 * 180.29757 * 21 20 19 23 23 O 1.21498 * 120.00032 * 0.02562 * 22 21 20 24 24 O 1.34752 * 119.99783 * 180.02562 * 22 21 20 25 25 C 1.39784 * 119.81736 * 0.28441 * 21 20 19 26 26 C 1.37681 * 119.90771 * 359.97438 * 25 21 20 27 27 H 0.96991 * 119.99936 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47016 * 60.00340 * 9 7 2 29 29 H 1.09001 * 109.46878 * 299.99996 * 9 7 2 30 30 H 1.08995 * 109.47425 * 59.99276 * 10 9 7 31 31 H 1.09008 * 109.47063 * 300.00205 * 10 9 7 32 32 H 1.09001 * 109.46902 * 59.99259 * 11 10 9 33 33 H 1.09002 * 109.46882 * 300.00554 * 11 10 9 34 34 H 0.96998 * 120.00485 * 359.97438 * 14 12 11 35 35 H 1.09000 * 109.47227 * 59.99574 * 15 14 12 36 36 H 1.09001 * 109.46767 * 299.99168 * 15 14 12 37 37 H 1.09000 * 109.46683 * 304.99573 * 16 15 14 38 38 H 1.09000 * 109.46810 * 184.99568 * 16 15 14 39 39 H 1.07998 * 119.95278 * 359.97438 * 19 18 17 40 40 H 1.08002 * 120.04953 * 179.72504 * 20 19 18 41 41 H 0.96703 * 116.99904 * 180.02562 * 24 22 21 42 42 H 1.08005 * 120.04680 * 180.02562 * 25 21 20 43 43 H 1.08000 * 119.95490 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 0.0001 12 6 2.4595 -6.1325 -0.0005 13 8 3.6519 -5.9110 -0.0019 14 7 2.0102 -7.4032 -0.0006 15 6 2.9622 -8.5168 -0.0007 16 6 2.1971 -9.8418 -0.0002 17 8 1.4655 -9.9699 -1.2209 18 6 0.7281 -11.0976 -1.3818 19 6 0.7058 -12.0601 -0.3789 20 6 -0.0364 -13.2083 -0.5406 21 6 -0.7776 -13.4003 -1.7102 22 6 -1.5792 -14.6257 -1.8849 23 8 -1.5965 -15.4699 -1.0113 24 8 -2.2925 -14.8090 -3.0133 25 6 -0.7569 -12.4273 -2.7137 26 6 -0.0077 -11.2843 -2.5463 27 1 -0.4849 0.8400 -0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8897 30 1 2.8719 -3.6044 0.8893 31 1 2.8719 -3.6044 -0.8906 32 1 0.8532 -5.0451 -0.8896 33 1 0.8538 -5.0446 0.8903 34 1 1.0566 -7.5805 0.0001 35 1 3.5889 -8.4591 0.8893 36 1 3.5888 -8.4590 -0.8907 37 1 1.5053 -9.8615 0.8419 38 1 2.9021 -10.6683 0.0893 39 1 1.2754 -11.9091 0.5261 40 1 -0.0498 -13.9576 0.2371 41 1 -2.8027 -15.6276 -3.0820 42 1 -1.3284 -12.5716 -3.6187 43 1 0.0085 -10.5319 -3.3209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:05 Heat of formation + Delta-G solvation = -186.455802 kcal Electronic energy + Delta-G solvation = -24759.315515 eV Core-core repulsion = 20768.021319 eV Total energy + Delta-G solvation = -3991.294196 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.62539 -40.96499 -40.52338 -38.44353 -37.07714 -36.24936 -35.77673 -34.01925 -32.32386 -31.85752 -30.75378 -29.29830 -26.05146 -25.37565 -24.63402 -22.91620 -22.28217 -22.06798 -21.22918 -19.47923 -19.12754 -18.61395 -18.22346 -17.84342 -17.44786 -16.90200 -16.70471 -16.61675 -16.44958 -16.19933 -15.62784 -15.42198 -14.97959 -14.76986 -14.55885 -14.28455 -14.20463 -13.84135 -13.80167 -13.55773 -13.43403 -13.04786 -12.83027 -12.60872 -12.58524 -12.49996 -12.38137 -12.05985 -11.86124 -11.74670 -11.53862 -11.45623 -11.25476 -10.75537 -10.53357 -10.16188 -10.10889 -9.41520 -8.19313 -6.29225 -0.32100 0.27884 1.40465 1.41507 1.49673 1.53035 1.67243 1.97859 2.12679 2.23651 2.43051 2.71098 3.13644 3.58330 3.75363 3.82165 3.94502 4.06431 4.08910 4.17810 4.25416 4.28835 4.31029 4.38028 4.48671 4.66836 4.75690 4.87727 4.94905 4.99463 5.10269 5.13141 5.18254 5.20879 5.27581 5.42783 5.55577 5.56519 5.58003 5.77078 5.88299 6.25800 6.28580 6.54541 6.86359 6.96859 7.28114 7.39431 8.92126 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025609 B = 0.001605 C = 0.001540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.114111 B =17441.658602 C =18172.743572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.962 3.038 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.024 3.976 10 C -0.083 4.083 11 C -0.132 4.132 12 C 0.517 3.483 13 O -0.585 6.585 14 N -0.719 5.719 15 C 0.118 3.882 16 C 0.047 3.953 17 O -0.318 6.318 18 C 0.166 3.834 19 C -0.220 4.220 20 C -0.018 4.018 21 C -0.192 4.192 22 C 0.535 3.465 23 O -0.556 6.556 24 O -0.507 6.507 25 C -0.015 4.015 26 C -0.175 4.175 27 H 0.264 0.736 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.041 0.959 31 H 0.039 0.961 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.416 0.584 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.162 0.838 40 H 0.142 0.858 41 H 0.432 0.568 42 H 0.160 0.840 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 -32.926 -3.468 33.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.198 1.198 5 H -0.203 1.203 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.070 0.930 9 C -0.013 4.013 10 C -0.121 4.121 11 C -0.171 4.171 12 C 0.305 3.695 13 O -0.465 6.465 14 N -0.372 5.372 15 C -0.005 4.005 16 C -0.027 4.027 17 O -0.231 6.231 18 C 0.119 3.881 19 C -0.238 4.238 20 C -0.036 4.036 21 C -0.194 4.194 22 C 0.382 3.618 23 O -0.449 6.449 24 O -0.320 6.320 25 C -0.033 4.033 26 C -0.193 4.193 27 H 0.073 0.927 28 H 0.019 0.981 29 H 0.020 0.980 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.124 0.876 33 H 0.127 0.873 34 H 0.253 0.747 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.180 0.820 40 H 0.160 0.840 41 H 0.294 0.706 42 H 0.178 0.822 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.121 -32.381 -3.342 32.622 hybrid contribution -0.429 0.252 0.105 0.509 sum -2.550 -32.128 -3.237 32.392 Atomic orbital electron populations 1.70065 1.07485 1.27759 1.51597 1.25909 0.95834 1.03066 0.94709 0.85494 0.78632 0.78695 0.78516 1.19763 1.20331 1.19255 1.21706 0.93365 0.92838 1.50698 0.93036 1.19039 0.94263 0.92443 0.95554 1.21158 0.97608 0.93029 1.00289 1.21676 0.97995 0.91788 1.05687 1.20992 0.89292 0.84858 0.74353 1.90671 1.18969 1.85540 1.51286 1.45890 1.11301 1.04699 1.75357 1.21487 0.91944 0.83555 1.03507 1.23345 0.96193 0.97788 0.85390 1.86110 1.58665 1.37401 1.40899 1.19530 0.89296 0.85238 0.94050 1.21435 1.06030 0.95079 1.01279 1.21178 0.90885 0.96309 0.95235 1.19082 1.05858 0.95338 0.99081 1.20892 0.76423 0.85733 0.78755 1.90881 1.64131 1.45968 1.43902 1.84522 1.59160 1.48580 1.39767 1.21415 0.93837 0.90210 0.97813 1.20681 1.00571 1.00240 0.97856 0.92690 0.98105 0.97989 0.94005 0.94187 0.87625 0.87301 0.74722 0.88546 0.91718 0.88566 0.87401 0.82036 0.83996 0.70564 0.82226 0.83310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.45 0.28 -56.04 16 2 C 0.00 0.16 5.46 84.65 0.46 0.62 16 3 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 7 C -0.55 -32.27 9.11 25.60 0.23 -32.03 16 8 H 0.05 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.02 1.28 4.97 29.85 0.15 1.42 16 10 C -0.08 -3.61 4.44 30.59 0.14 -3.47 16 11 C -0.13 -4.15 5.70 29.84 0.17 -3.98 16 12 C 0.52 15.47 7.83 87.65 0.69 16.16 16 13 O -0.58 -22.75 15.98 -3.04 -0.05 -22.80 16 14 N -0.72 -14.13 5.50 -463.05 -2.55 -16.67 16 15 C 0.12 1.82 6.06 86.38 0.52 2.35 16 16 C 0.05 0.40 4.87 71.98 0.35 0.76 16 17 O -0.32 -4.22 10.07 -90.13 -0.91 -5.12 16 18 C 0.17 2.08 6.70 22.64 0.15 2.24 16 19 C -0.22 -2.27 9.01 22.33 0.20 -2.07 16 20 C -0.02 -0.23 9.59 22.51 0.22 -0.01 16 21 C -0.19 -2.69 5.87 -20.09 -0.12 -2.81 16 22 C 0.53 8.17 8.26 70.26 0.58 8.75 16 23 O -0.56 -11.89 17.12 19.84 0.34 -11.55 16 24 O -0.51 -4.56 12.67 -56.62 -0.72 -5.28 16 25 C -0.01 -0.17 9.61 22.51 0.22 0.05 16 26 C -0.18 -2.14 9.97 22.32 0.22 -1.92 16 27 H 0.26 15.00 8.31 -92.72 -0.77 14.23 16 28 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 29 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 31 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 32 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 34 H 0.42 6.00 8.47 -92.71 -0.79 5.22 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 0.48 7.64 -2.39 -0.02 0.46 16 38 H 0.11 0.46 7.66 -2.39 -0.02 0.44 16 39 H 0.16 0.83 6.28 -2.91 -0.02 0.81 16 40 H 0.14 1.71 7.64 -2.91 -0.02 1.69 16 41 H 0.43 0.23 9.11 -74.05 -0.67 -0.45 16 42 H 0.16 1.25 7.60 -2.91 -0.02 1.23 16 43 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 Total: -1.00 -81.03 376.51 2.20 -78.83 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -0.41 Total: 5.43 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: 4.18 Total: -13.95 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: -2.26 Total: -72.72 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -1.33 Total: -44.75 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -81.03 2.20 -78.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.628 kcal (2) G-P(sol) polarization free energy of solvation -81.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds