Wall clock time and date at job start Tue Mar 31 2020 13:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47267 * 2 1 4 4 C 1.52998 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.47686 * 59.99604 * 4 3 2 6 6 N 1.46509 * 109.46754 * 180.02562 * 4 3 2 7 7 C 1.34777 * 119.99506 * 179.97438 * 6 4 3 8 8 O 1.21585 * 120.00380 * 359.97438 * 7 6 4 9 9 C 1.47539 * 119.99337 * 179.97438 * 7 6 4 10 10 C 1.39657 * 120.19980 * 0.02562 * 9 7 6 11 11 C 1.37830 * 119.92120 * 179.74313 * 10 9 7 12 12 C 1.38576 * 120.32336 * 0.27927 * 11 10 9 13 13 C 1.38028 * 120.39639 * 359.97438 * 12 11 10 14 14 C 1.38833 * 120.07673 * 359.96058 * 13 12 11 15 15 O 1.35520 * 120.16404 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99599 * 354.40185 * 15 14 13 17 17 H 1.07998 * 120.00609 * 5.05910 * 16 15 14 18 18 C 1.38699 * 119.99815 * 185.06783 * 16 15 14 19 19 N 1.31520 * 120.00091 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00341 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46721 * 59.99562 * 20 18 16 22 22 H 1.48490 * 109.47214 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47015 * 300.00007 * 20 18 16 24 24 C 1.50697 * 109.47033 * 299.99383 * 4 3 2 25 25 O 1.20829 * 120.00098 * 95.00375 * 24 4 3 26 26 O 1.34227 * 120.00321 * 275.00566 * 24 4 3 27 27 H 1.09002 * 109.46866 * 300.00048 * 1 2 3 28 28 H 1.08997 * 109.46746 * 59.99981 * 1 2 3 29 29 H 1.08994 * 109.47257 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46866 * 239.99952 * 2 1 3 31 31 H 1.08997 * 109.46746 * 120.00019 * 2 1 3 32 32 H 1.08994 * 109.47364 * 59.99889 * 3 2 1 33 33 H 1.09007 * 109.46770 * 299.99846 * 3 2 1 34 34 H 1.08997 * 109.47184 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47155 * 300.00542 * 5 4 3 36 36 H 1.08999 * 109.46832 * 59.99796 * 5 4 3 37 37 H 0.96997 * 119.99883 * 359.97438 * 6 4 3 38 38 H 1.08001 * 120.04270 * 0.02562 * 10 9 7 39 39 H 1.07996 * 119.83927 * 180.24945 * 11 10 9 40 40 H 1.07994 * 119.80112 * 179.97438 * 12 11 10 41 41 H 1.08001 * 119.95760 * 179.97438 * 13 12 11 42 42 H 0.96996 * 120.00027 * 180.02562 * 19 18 16 43 43 H 0.96700 * 117.00168 * 179.97438 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 -0.0006 5 6 4.0796 0.7212 -1.2501 6 7 4.0585 2.8237 0.0000 7 6 5.3836 3.0698 0.0001 8 8 6.1736 2.1456 0.0001 9 6 5.8753 4.4608 0.0001 10 6 4.9715 5.5255 0.0006 11 6 5.4372 6.8227 0.0060 12 6 6.7994 7.0770 0.0051 13 6 7.7045 6.0349 -0.0006 14 6 7.2536 4.7218 -0.0047 15 8 8.1406 3.6972 -0.0098 16 6 9.4448 4.0175 -0.1278 17 1 9.7483 5.0540 -0.1306 18 6 10.3969 3.0158 -0.2459 19 7 10.0275 1.7536 -0.2421 20 14 12.2041 3.4595 -0.4101 21 1 12.6362 4.2262 0.7861 22 1 13.0107 2.2176 -0.5195 23 1 12.4019 4.2876 -1.6268 24 6 4.0728 0.7319 1.2296 25 8 4.3602 -0.4405 1.1751 26 8 4.2015 1.4013 2.3858 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6768 1.9563 0.8899 33 1 1.6767 1.9563 -0.8901 34 1 5.1696 0.7216 -1.2507 35 1 3.7162 -0.3064 -1.2501 36 1 3.7159 1.2352 -2.1399 37 1 3.4281 3.5609 0.0003 38 1 3.9088 5.3326 0.0014 39 1 4.7371 7.6450 0.0104 40 1 7.1551 8.0967 0.0090 41 1 8.7646 6.2412 -0.0016 42 1 10.6933 1.0531 -0.3243 43 1 4.5274 0.9030 3.1477 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609953042.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:49 Heat of formation + Delta-G solvation = -156.672144 kcal Electronic energy + Delta-G solvation = -27998.098879 eV Core-core repulsion = 24008.096198 eV Total energy + Delta-G solvation = -3990.002680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.12282 -41.01770 -39.75162 -38.04958 -37.71783 -37.05621 -34.78289 -34.31708 -32.67281 -30.85197 -30.52852 -27.95777 -27.37329 -25.84226 -24.80706 -23.38005 -22.78025 -21.34650 -20.97470 -19.86508 -19.40516 -19.05946 -18.07994 -17.94923 -16.81992 -16.56055 -16.37840 -16.07208 -16.01020 -15.80181 -15.40665 -15.23403 -15.17140 -14.57046 -14.49499 -14.40050 -14.20005 -13.58105 -13.54029 -13.19798 -13.15692 -12.97154 -12.78263 -12.64564 -12.58079 -12.49464 -12.40572 -12.31424 -12.16221 -12.03161 -11.67001 -11.46443 -11.39409 -10.82716 -10.53844 -10.26093 -9.79531 -9.02098 -8.44782 -6.15833 0.13580 0.75519 1.09555 1.30824 1.43765 1.48739 1.87325 2.07893 2.15112 2.26868 2.88401 3.23951 3.47871 3.50358 3.66776 3.91663 4.04081 4.10998 4.14344 4.27745 4.34576 4.48904 4.54345 4.58913 4.66524 4.72807 4.76863 4.84407 4.93999 5.00702 5.07531 5.13591 5.15504 5.24767 5.31968 5.37019 5.45454 5.50565 5.53950 5.62712 5.72339 5.95199 6.19443 6.64767 6.87672 6.94577 7.44685 7.80708 8.75066 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014168 B = 0.004203 C = 0.003457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.795912 B = 6660.284899 C = 8096.495869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C -0.109 4.109 4 C 0.196 3.804 5 C -0.155 4.155 6 N -0.703 5.703 7 C 0.554 3.446 8 O -0.556 6.556 9 C -0.243 4.243 10 C -0.027 4.027 11 C -0.200 4.200 12 C -0.040 4.040 13 C -0.260 4.260 14 C 0.149 3.851 15 O -0.189 6.189 16 C -0.427 4.427 17 H 0.107 0.893 18 C -0.022 4.022 19 N -0.905 5.905 20 Si 1.020 2.980 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.253 1.253 24 C 0.480 3.520 25 O -0.547 6.547 26 O -0.510 6.510 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.033 0.967 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.420 0.580 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.152 0.848 41 H 0.121 0.879 42 H 0.269 0.731 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.955 7.387 0.246 21.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.169 4.169 3 C -0.146 4.146 4 C 0.108 3.892 5 C -0.213 4.213 6 N -0.361 5.361 7 C 0.345 3.655 8 O -0.434 6.434 9 C -0.248 4.248 10 C -0.045 4.045 11 C -0.218 4.218 12 C -0.058 4.058 13 C -0.279 4.279 14 C 0.094 3.906 15 O -0.091 6.091 16 C -0.503 4.503 17 H 0.124 0.876 18 C -0.221 4.221 19 N -0.541 5.541 20 Si 0.838 3.162 21 H -0.178 1.178 22 H -0.200 1.200 23 H -0.177 1.177 24 C 0.322 3.678 25 O -0.436 6.436 26 O -0.322 6.322 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.059 0.941 32 H 0.116 0.884 33 H 0.141 0.859 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.260 0.740 38 H 0.183 0.817 39 H 0.183 0.817 40 H 0.170 0.830 41 H 0.139 0.861 42 H 0.078 0.922 43 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -19.388 6.148 -0.086 20.340 hybrid contribution 1.648 -0.590 0.669 1.874 sum -17.740 5.559 0.584 18.600 Atomic orbital electron populations 1.21706 0.92928 1.02403 1.03023 1.21639 0.98059 0.95094 1.02118 1.21969 0.86198 0.99707 1.06729 1.20307 0.97894 0.82147 0.88891 1.22166 1.01579 1.01559 0.96014 1.45637 1.06146 1.07098 1.77249 1.18542 0.82408 0.89196 0.75391 1.90956 1.56347 1.46702 1.49346 1.19237 0.91018 0.93601 1.20927 1.21345 0.98973 0.91124 0.93068 1.21191 0.95388 0.96902 1.08327 1.21440 0.93453 0.98581 0.92350 1.21294 1.01293 0.91920 1.13417 1.20096 0.90244 0.88834 0.91390 1.84178 1.16477 1.30786 1.77679 1.21977 0.79950 0.95266 1.53087 0.87626 1.26733 1.05604 0.94133 0.95619 1.70325 1.36461 1.00582 1.46749 0.84652 0.73248 0.78149 0.80116 1.17791 1.19998 1.17714 1.24328 0.72653 0.85411 0.85389 1.90656 1.47767 1.19493 1.85682 1.84495 1.78712 1.47789 1.21231 0.91938 0.90840 0.92437 0.91220 0.94078 0.88432 0.85949 0.94747 0.89858 0.88423 0.74012 0.81731 0.81696 0.82994 0.86129 0.92202 0.72252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.13 -2.37 5.27 30.60 0.16 -2.21 16 3 C -0.11 -1.85 4.37 30.59 0.13 -1.71 16 4 C 0.20 5.67 0.80 2.85 0.00 5.67 16 5 C -0.16 -5.07 7.58 71.98 0.55 -4.53 16 6 N -0.70 -20.84 4.83 -429.46 -2.07 -22.91 16 7 C 0.55 24.21 7.09 86.70 0.61 24.82 16 8 O -0.56 -31.96 12.37 16.91 0.21 -31.75 16 9 C -0.24 -10.21 5.89 -19.99 -0.12 -10.32 16 10 C -0.03 -0.75 9.53 22.52 0.21 -0.54 16 11 C -0.20 -5.01 10.03 22.25 0.22 -4.79 16 12 C -0.04 -1.21 10.03 22.30 0.22 -0.99 16 13 C -0.26 -10.96 9.16 22.36 0.20 -10.76 16 14 C 0.15 7.60 6.66 22.91 0.15 7.75 16 15 O -0.19 -11.97 7.84 0.81 0.01 -11.97 16 16 C -0.43 -25.92 9.49 67.93 0.64 -25.28 16 17 H 0.11 5.74 5.21 -2.91 -0.02 5.72 16 18 C -0.02 -1.30 5.49 84.85 0.47 -0.84 16 19 N -0.91 -60.08 13.67 21.62 0.30 -59.78 16 20 Si 1.02 44.74 29.55 68.60 2.03 46.76 16 21 H -0.25 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 24 C 0.48 17.30 4.79 71.24 0.34 17.64 16 25 O -0.55 -23.14 16.23 21.95 0.36 -22.78 16 26 O -0.51 -16.47 13.02 -51.39 -0.67 -17.14 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.07 1.33 6.43 -2.39 -0.02 1.32 16 31 H 0.04 0.95 6.83 -2.39 -0.02 0.93 16 32 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.12 1.32 8.14 -2.38 -0.02 1.30 16 34 H 0.03 1.53 6.17 -2.39 -0.01 1.52 16 35 H 0.08 2.52 6.16 -2.39 -0.01 2.51 16 36 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.42 8.25 6.50 -92.71 -0.60 7.65 16 38 H 0.17 2.84 6.40 -2.91 -0.02 2.82 16 39 H 0.17 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 41 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 42 H 0.27 16.50 8.31 -92.71 -0.77 15.73 16 43 H 0.42 10.62 9.10 -74.06 -0.67 9.95 16 Total: -1.00 -95.04 356.63 4.48 -90.57 By element: Atomic # 1 Polarization: 36.30 SS G_CDS: -0.20 Total: 36.10 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: 4.52 Total: -7.10 kcal Atomic # 7 Polarization: -80.92 SS G_CDS: -1.78 Total: -82.69 kcal Atomic # 8 Polarization: -83.54 SS G_CDS: -0.10 Total: -83.63 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -95.04 4.48 -90.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609953042.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.106 kcal (2) G-P(sol) polarization free energy of solvation -95.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds