Wall clock time and date at job start Tue Mar 31 2020 12:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86792 * 119.99702 * 2 1 4 4 H 1.48502 * 109.47064 * 269.99725 * 3 2 1 5 5 H 1.48498 * 109.47302 * 29.99883 * 3 2 1 6 6 H 1.48505 * 109.47070 * 150.00020 * 3 2 1 7 7 C 1.38655 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00115 * 180.02562 * 7 2 1 9 9 O 1.34830 * 120.00131 * 0.02562 * 7 2 1 10 10 C 1.35753 * 117.00094 * 185.05594 * 9 7 2 11 11 C 1.38890 * 120.06788 * 354.48622 * 10 9 7 12 12 C 1.38079 * 119.93218 * 179.97438 * 11 10 9 13 13 C 1.38320 * 120.06698 * 359.74142 * 12 11 10 14 14 C 1.38286 * 120.13644 * 0.51230 * 13 12 11 15 15 C 1.50698 * 119.96402 * 179.76137 * 14 13 12 16 16 N 1.46505 * 109.47587 * 269.72676 * 15 14 13 17 17 C 1.34771 * 120.00363 * 179.97438 * 16 15 14 18 18 O 1.21517 * 119.99716 * 0.02562 * 17 16 15 19 19 O 1.34635 * 120.00073 * 179.97438 * 17 16 15 20 20 C 1.45205 * 117.00128 * 180.02562 * 19 17 16 21 21 C 1.52991 * 109.47387 * 180.02562 * 20 19 17 22 22 H 1.09008 * 110.32951 * 304.20381 * 21 20 19 23 23 C 1.54478 * 110.47004 * 181.88828 * 21 20 19 24 24 C 1.54506 * 104.06539 * 217.13998 * 23 21 20 25 25 C 1.54483 * 104.06146 * 0.02562 * 24 23 21 26 26 O 1.44422 * 104.80327 * 23.97626 * 25 24 23 27 27 C 1.38122 * 120.06705 * 359.49182 * 14 13 12 28 28 H 0.96998 * 120.00330 * 0.02562 * 1 2 3 29 29 H 1.08006 * 120.03574 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.96651 * 180.02562 * 12 11 10 31 31 H 1.08000 * 119.93757 * 180.27847 * 13 12 11 32 32 H 1.08997 * 109.47090 * 149.72955 * 15 14 13 33 33 H 1.09005 * 109.47239 * 29.72592 * 15 14 13 34 34 H 0.97003 * 119.99325 * 0.02562 * 16 15 14 35 35 H 1.09000 * 109.47086 * 59.99460 * 20 19 17 36 36 H 1.09004 * 109.46528 * 300.00242 * 20 19 17 37 37 H 1.09002 * 110.50638 * 335.78551 * 23 21 20 38 38 H 1.09000 * 110.51425 * 98.49408 * 23 21 20 39 39 H 1.09004 * 110.50694 * 118.64106 * 24 23 21 40 40 H 1.08998 * 110.51282 * 241.21549 * 24 23 21 41 41 H 1.09000 * 110.36650 * 265.14341 * 25 24 23 42 42 H 1.09005 * 110.37140 * 142.80913 * 25 24 23 43 43 H 1.08005 * 120.03242 * 180.27333 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2494 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2008 0.0010 9 8 1.3348 -2.3685 0.0005 10 6 2.0701 -3.5046 0.1077 11 6 3.4574 -3.4394 0.0957 12 6 4.2025 -4.5967 0.2053 13 6 3.5687 -5.8195 0.3325 14 6 2.1876 -5.8883 0.3395 15 6 1.5011 -7.2232 0.4728 16 7 1.2725 -7.7900 -0.8587 17 6 0.6683 -8.9879 -0.9865 18 8 0.3127 -9.5976 0.0026 19 8 0.4579 -9.5085 -2.2102 20 6 -0.1987 -10.8022 -2.2722 21 6 -0.3494 -11.2281 -3.7338 22 1 -0.8838 -10.4635 -4.2979 23 6 -1.0884 -12.5813 -3.8288 24 6 -0.3886 -13.3102 -4.9976 25 6 0.6910 -12.3114 -5.4702 26 8 0.9469 -11.4739 -4.3217 27 6 1.4367 -4.7342 0.2301 28 1 -0.4850 0.8400 -0.0004 29 1 3.9529 -2.4844 0.0006 30 1 5.2813 -4.5465 0.1965 31 1 4.1536 -6.7229 0.4226 32 1 0.5456 -7.0913 0.9803 33 1 2.1301 -7.8990 1.0523 34 1 1.5568 -7.3034 -1.6482 35 1 -1.1834 -10.7324 -1.8102 36 1 0.4012 -11.5399 -1.7391 37 1 -0.9730 -13.1452 -2.9031 38 1 -2.1437 -12.4254 -4.0530 39 1 0.0729 -14.2345 -4.6497 40 1 -1.0983 -13.5167 -5.7986 41 1 0.3165 -11.7127 -6.3005 42 1 1.5972 -12.8421 -5.7623 43 1 0.3580 -4.7881 0.2400 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649799609.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:28 Heat of formation + Delta-G solvation = -131.572944 kcal Electronic energy + Delta-G solvation = -25543.479826 eV Core-core repulsion = 21554.565528 eV Total energy + Delta-G solvation = -3988.914297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51735 -39.65564 -39.13048 -37.18273 -36.31948 -34.59095 -32.60573 -32.34535 -31.42185 -30.61708 -29.15275 -26.55666 -25.66022 -25.01267 -22.51309 -21.75340 -21.46865 -21.29726 -20.81809 -18.89414 -17.62508 -17.27617 -17.07603 -16.84783 -16.36494 -15.86876 -15.65285 -15.18695 -14.86955 -14.68777 -14.38945 -14.14989 -13.81745 -13.66263 -13.62271 -13.27868 -12.70648 -12.46830 -12.28932 -12.23017 -12.19378 -11.86940 -11.73053 -11.66851 -11.39854 -11.09423 -10.95457 -10.84596 -10.73877 -10.71235 -10.56303 -10.47816 -10.14850 -9.42182 -9.10942 -8.89940 -8.28438 -7.34335 -6.49677 -4.09184 1.70445 2.23709 2.42858 2.88221 3.09984 3.11102 3.15895 3.44670 3.92162 3.99957 4.13732 4.41225 4.45913 4.56299 4.71791 4.77827 4.87741 4.91771 5.04391 5.05574 5.13259 5.23761 5.27046 5.35123 5.40725 5.49842 5.53510 5.57903 5.70813 5.79674 5.86263 6.05797 6.23300 6.25567 6.40358 6.46026 6.53256 6.79945 6.98232 7.16027 7.25846 7.34225 7.49671 7.69450 7.94279 8.38194 8.95589 9.63953 10.68009 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020562 B = 0.002003 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.430076 B =13978.220609 C =14382.268242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.393 4.393 8 H 0.093 0.907 9 O -0.176 6.176 10 C 0.149 3.851 11 C -0.223 4.223 12 C -0.077 4.077 13 C -0.192 4.192 14 C -0.076 4.076 15 C 0.186 3.814 16 N -0.698 5.698 17 C 0.647 3.353 18 O -0.580 6.580 19 O -0.364 6.364 20 C 0.095 3.905 21 C 0.074 3.926 22 H 0.082 0.918 23 C -0.148 4.148 24 C -0.155 4.155 25 C 0.042 3.958 26 O -0.362 6.362 27 C -0.168 4.168 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.410 0.590 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.522 -21.926 -8.179 23.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.110 0.890 9 O -0.079 6.079 10 C 0.095 3.905 11 C -0.242 4.242 12 C -0.095 4.095 13 C -0.211 4.211 14 C -0.077 4.077 15 C 0.065 3.935 16 N -0.357 5.357 17 C 0.400 3.600 18 O -0.470 6.470 19 O -0.278 6.278 20 C 0.020 3.980 21 C 0.016 3.984 22 H 0.100 0.900 23 C -0.186 4.186 24 C -0.192 4.192 25 C -0.035 4.035 26 O -0.281 6.281 27 C -0.188 4.188 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.128 0.872 31 H 0.126 0.874 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.246 0.754 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.100 0.900 38 H 0.103 0.897 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 0.075 -21.981 -7.651 23.275 hybrid contribution 0.427 0.954 -0.398 1.118 sum 0.501 -21.027 -8.049 22.521 Atomic orbital electron populations 1.70035 1.05972 1.27779 1.45733 1.25303 0.95861 0.98884 0.96465 0.85701 0.78923 0.80008 0.78737 1.19852 1.20224 1.19169 1.21326 0.91804 0.80748 1.53052 0.89012 1.83983 1.34262 1.11402 1.78259 1.19312 0.90272 0.88082 0.92793 1.21259 0.93835 0.99132 1.09993 1.20751 0.98638 0.92222 0.97875 1.20500 0.93283 0.97246 1.10078 1.19198 0.93519 0.92532 1.02437 1.20163 1.00408 0.91282 0.81695 1.44877 1.61899 1.17984 1.10946 1.18120 0.78045 0.82157 0.81700 1.90982 1.56302 1.61822 1.37885 1.86272 1.74592 1.36588 1.30338 1.22986 0.97983 0.81646 0.95399 1.23093 0.85406 0.96905 0.92969 0.89965 1.22906 1.00403 0.95213 1.00029 1.22943 0.98459 0.99602 0.98236 1.23437 0.99100 0.91653 0.89350 1.89260 1.26591 1.69911 1.42353 1.20094 0.99492 0.89829 1.09368 0.91942 0.85402 0.87184 0.87357 0.90479 0.90577 0.75428 0.89630 0.90339 0.90025 0.89718 0.90423 0.90240 0.92021 0.88884 0.86269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.88 13.67 55.48 0.76 -24.12 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.16 29.55 -169.99 -5.02 15.14 16 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 7 C -0.39 -10.74 9.49 30.89 0.29 -10.45 16 8 H 0.09 2.31 5.20 -52.48 -0.27 2.03 16 9 O -0.18 -4.89 9.76 0.04 0.00 -4.89 16 10 C 0.15 3.47 6.65 -39.11 -0.26 3.21 16 11 C -0.22 -4.63 9.17 -39.40 -0.36 -4.99 16 12 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 13 C -0.19 -3.13 9.70 -39.53 -0.38 -3.51 16 14 C -0.08 -1.28 5.25 -104.65 -0.55 -1.83 16 15 C 0.19 2.75 5.80 -5.19 -0.03 2.72 16 16 N -0.70 -10.02 5.55 -66.47 -0.37 -10.39 16 17 C 0.65 9.92 8.75 54.05 0.47 10.39 16 18 O -0.58 -10.19 16.13 -19.29 -0.31 -10.50 16 19 O -0.36 -5.02 10.27 -41.97 -0.43 -5.45 16 20 C 0.09 1.02 5.09 37.15 0.19 1.21 16 21 C 0.07 0.66 3.58 -25.96 -0.09 0.57 16 22 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 23 C -0.15 -0.88 6.63 -25.16 -0.17 -1.05 16 24 C -0.15 -0.81 7.09 -25.16 -0.18 -0.99 16 25 C 0.04 0.29 7.63 37.94 0.29 0.58 16 26 O -0.36 -3.92 11.34 -35.73 -0.41 -4.33 16 27 C -0.17 -3.38 9.65 -39.40 -0.38 -3.76 16 28 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.13 2.66 5.64 -52.48 -0.30 2.37 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 33 H 0.08 1.07 8.08 -51.93 -0.42 0.65 16 34 H 0.41 5.50 8.57 -40.82 -0.35 5.15 16 35 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.46 7.88 -51.93 -0.41 0.05 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.12 2.36 8.06 -52.48 -0.42 1.94 16 LS Contribution 368.65 15.07 5.56 5.56 Total: -1.00 -32.61 368.65 -7.83 -40.44 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -5.95 Total: 7.20 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.65 Total: -8.66 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.39 Total: -34.51 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -1.15 Total: -25.16 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.61 -7.83 -40.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649799609.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.130 kcal (2) G-P(sol) polarization free energy of solvation -32.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds