Wall clock time and date at job start Tue Mar 31 2020 13:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47284 * 2 1 4 4 C 1.46910 * 110.99806 * 299.07006 * 3 2 1 5 5 C 1.50697 * 109.47117 * 293.95371 * 4 3 2 6 6 H 1.07999 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00170 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47403 * 90.00403 * 9 7 5 11 11 H 1.48503 * 109.47199 * 210.00302 * 9 7 5 12 12 H 1.48494 * 109.47156 * 329.99830 * 9 7 5 13 13 C 1.46896 * 111.00367 * 63.02247 * 3 2 1 14 14 C 1.50702 * 109.46956 * 70.59004 * 13 3 2 15 15 C 1.35083 * 126.08150 * 261.65679 * 14 13 3 16 16 N 1.35030 * 107.97999 * 180.02562 * 15 14 13 17 17 H 0.97005 * 125.92672 * 180.02562 * 16 15 14 18 18 N 1.40064 * 108.14428 * 359.97438 * 16 15 14 19 19 C 1.31632 * 108.10595 * 359.72509 * 18 16 15 20 20 C 1.48419 * 126.03918 * 180.27812 * 19 18 16 21 21 C 1.39299 * 120.09550 * 144.91272 * 20 19 18 22 22 C 1.38259 * 119.90083 * 179.71990 * 21 20 19 23 23 F 1.35101 * 119.94823 * 180.27374 * 22 21 20 24 24 C 1.38500 * 120.09801 * 0.55121 * 22 21 20 25 25 C 1.38501 * 120.19116 * 359.71969 * 24 22 21 26 26 F 1.35090 * 119.95317 * 180.02562 * 25 24 22 27 27 C 1.38267 * 120.09061 * 0.02562 * 25 24 22 28 28 H 1.08996 * 109.46650 * 59.53995 * 1 2 3 29 29 H 1.08996 * 109.46803 * 179.53813 * 1 2 3 30 30 H 1.08992 * 109.47120 * 299.53967 * 1 2 3 31 31 H 1.08999 * 109.47652 * 239.99817 * 2 1 3 32 32 H 1.09004 * 109.47280 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.46672 * 53.95228 * 4 3 2 34 34 H 1.08993 * 109.46913 * 173.95290 * 4 3 2 35 35 H 0.96992 * 120.00634 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47660 * 190.59644 * 13 3 2 37 37 H 1.09003 * 109.46916 * 310.59524 * 13 3 2 38 38 H 1.08006 * 126.00424 * 0.03769 * 15 14 13 39 39 H 1.08003 * 120.04328 * 359.97438 * 21 20 19 40 40 H 1.07998 * 119.90050 * 179.74466 * 24 22 21 41 41 H 1.08003 * 120.04029 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5669 2.1035 -1.1988 5 6 2.2078 1.4966 -2.4202 6 1 2.8836 0.6605 -2.3164 7 6 1.9308 2.0079 -3.6702 8 7 1.1075 3.0258 -3.7967 9 14 2.7246 1.2552 -5.1843 10 1 1.8583 0.1695 -5.7096 11 1 2.8945 2.3003 -6.2255 12 1 4.0522 0.6975 -4.8217 13 6 1.6087 2.0888 1.2221 14 6 2.3748 1.5413 2.3988 15 6 1.9289 0.6183 3.2786 16 7 2.9079 0.3961 4.1816 17 1 2.8633 -0.2201 4.9294 18 7 3.9994 1.2089 3.8505 19 6 3.6854 1.8966 2.7728 20 6 4.5568 2.8762 2.0774 21 6 4.5079 2.9931 0.6902 22 6 5.3173 3.9111 0.0469 23 9 5.2667 4.0292 -1.2980 24 6 6.1841 4.7058 0.7787 25 6 6.2400 4.5888 2.1576 26 9 7.0868 5.3667 2.8667 27 6 5.4303 3.6771 2.8095 28 1 -0.3632 0.5210 -0.8858 29 1 -0.3633 -1.0276 -0.0083 30 1 -0.3633 0.5066 0.8940 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.4828 2.0260 -1.2808 34 1 1.8515 3.1528 -1.1225 35 1 0.9128 3.3858 -4.6760 36 1 1.8174 3.1533 1.1161 37 1 0.5408 1.9423 1.3840 38 1 0.9598 0.1418 3.2623 39 1 3.8358 2.3705 0.1184 40 1 6.8178 5.4189 0.2726 41 1 5.4749 3.5863 3.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233405015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:45 Heat of formation + Delta-G solvation = 19.452806 kcal Electronic energy + Delta-G solvation = -27417.934783 eV Core-core repulsion = 23356.774689 eV Total energy + Delta-G solvation = -4061.160094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.88187 -48.46814 -41.23719 -38.39887 -37.25776 -32.86637 -32.55480 -31.06024 -29.96520 -29.64294 -29.33062 -26.90697 -24.54434 -23.87485 -23.05607 -22.56829 -20.79975 -20.08195 -19.25342 -17.56136 -17.28339 -16.74898 -16.26067 -16.12280 -15.73775 -15.44156 -15.14875 -14.93322 -14.80845 -14.45840 -14.28722 -13.97250 -13.90244 -13.44678 -13.17203 -12.88120 -12.40494 -12.05853 -11.85528 -11.80354 -11.68678 -11.58770 -11.16080 -11.11064 -10.93646 -10.69394 -10.62506 -10.45465 -10.06313 -9.84125 -9.76653 -9.21246 -8.66497 -8.47324 -8.41212 -8.28654 -7.23707 -6.00539 -4.01304 0.89395 1.24511 1.97417 2.79570 2.83098 3.33801 3.41093 3.45429 3.70281 4.00497 4.45498 4.49324 4.62487 4.88511 4.95346 5.04907 5.17553 5.35989 5.37685 5.41976 5.48865 5.69575 5.76559 5.89560 5.93933 5.97677 6.07982 6.14951 6.16985 6.32065 6.37548 6.45028 6.64455 6.65473 6.68416 6.88793 7.12248 7.26293 7.29436 7.41498 7.65181 7.80940 8.08560 8.18217 8.52907 9.05645 9.63262 11.10099 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.005561 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.620692 B = 5033.602255 C = 7302.104911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.063 3.937 3 N -0.532 5.532 4 C 0.187 3.813 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.273 1.273 13 C 0.114 3.886 14 C -0.189 4.189 15 C 0.055 3.945 16 N -0.476 5.476 17 H 0.438 0.562 18 N -0.284 5.284 19 C 0.129 3.871 20 C 0.039 3.961 21 C -0.135 4.135 22 C 0.135 3.865 23 F -0.118 7.118 24 C -0.192 4.192 25 C 0.115 3.885 26 F -0.137 7.137 27 C -0.145 4.145 28 H 0.070 0.930 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.001 0.999 34 H 0.029 0.971 35 H 0.260 0.740 36 H 0.076 0.924 37 H 0.041 0.959 38 H 0.175 0.825 39 H 0.196 0.804 40 H 0.144 0.856 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -1.933 14.855 15.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.065 4.065 3 N -0.256 5.256 4 C 0.062 3.938 5 C -0.543 4.543 6 H 0.080 0.920 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.720 3.280 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.197 1.197 13 C -0.015 4.015 14 C -0.200 4.200 15 C -0.091 4.091 16 N -0.185 5.185 17 H 0.282 0.718 18 N -0.108 5.108 19 C -0.036 4.036 20 C 0.037 3.963 21 C -0.155 4.155 22 C 0.116 3.884 23 F -0.096 7.096 24 C -0.212 4.212 25 C 0.095 3.905 26 F -0.116 7.116 27 C -0.165 4.165 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.019 0.981 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.192 0.808 39 H 0.213 0.787 40 H 0.162 0.838 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.345 -2.036 15.548 16.272 hybrid contribution -1.057 -0.349 -1.169 1.614 sum 3.289 -2.385 14.379 14.942 Atomic orbital electron populations 1.22379 0.99400 1.00869 1.02050 1.21918 0.91985 0.91324 1.01303 1.62215 1.59041 1.02240 1.02078 1.19843 0.94599 0.93835 0.85533 1.21088 1.26756 1.16251 0.90224 0.91973 1.24918 0.95268 0.95040 0.98972 1.69940 1.35627 1.24411 1.23635 0.86588 0.79876 0.78750 0.82775 1.20926 1.21318 1.19748 1.20448 0.95364 0.98033 0.87612 1.20159 0.95298 1.03444 1.01128 1.22291 0.95391 0.99449 0.91991 1.46093 1.11155 1.35562 1.25663 0.71788 1.77498 1.08147 1.08628 1.16534 1.20301 0.93394 0.96539 0.93392 1.17220 0.94037 0.93598 0.91485 1.22457 0.99850 0.98816 0.94359 1.17204 0.96684 0.96516 0.78036 1.91623 1.95090 1.94753 1.28177 1.21107 1.03263 1.03849 0.92956 1.16995 0.91970 0.92801 0.88715 1.91494 1.68742 1.73045 1.78308 1.21127 0.97261 0.97034 1.01118 0.91096 0.93574 0.93746 0.90174 0.93106 0.98108 0.95246 0.92995 0.90572 0.94081 0.80819 0.78727 0.83780 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.99 9.27 37.16 0.34 -2.65 16 2 C 0.06 1.09 5.73 -3.82 -0.02 1.07 16 3 N -0.53 -10.12 2.52 -237.51 -0.60 -10.71 16 4 C 0.19 4.40 4.12 -4.97 -0.02 4.38 16 5 C -0.50 -13.26 8.50 -34.44 -0.29 -13.55 16 6 H 0.06 1.64 7.11 -52.49 -0.37 1.26 16 7 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 8 N -0.90 -25.72 13.29 55.43 0.74 -24.98 16 9 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.11 1.86 4.22 -4.98 -0.02 1.84 16 14 C -0.19 -2.74 4.89 -104.76 -0.51 -3.26 16 15 C 0.06 0.63 11.09 -17.27 -0.19 0.44 16 16 N -0.48 -5.17 7.35 30.42 0.22 -4.95 16 17 H 0.44 3.08 8.96 -182.62 -1.64 1.44 16 18 N -0.28 -4.08 12.70 33.43 0.42 -3.65 16 19 C 0.13 1.98 6.74 -82.77 -0.56 1.43 16 20 C 0.04 0.61 5.80 -104.92 -0.61 0.00 16 21 C -0.13 -2.35 8.71 -39.18 -0.34 -2.69 16 22 C 0.14 2.29 7.29 -39.48 -0.29 2.01 16 23 F -0.12 -2.29 17.26 2.25 0.04 -2.25 16 24 C -0.19 -2.76 10.00 -39.39 -0.39 -3.15 16 25 C 0.11 1.60 7.29 -39.47 -0.29 1.31 16 26 F -0.14 -1.86 17.26 2.25 0.04 -1.82 16 27 C -0.15 -2.05 9.72 -39.18 -0.38 -2.43 16 28 H 0.07 1.35 6.27 -51.93 -0.33 1.02 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.04 0.63 6.28 -51.93 -0.33 0.30 16 31 H 0.08 1.56 6.83 -51.93 -0.35 1.20 16 32 H 0.05 0.79 6.74 -51.93 -0.35 0.44 16 33 H 0.00 0.03 6.02 -51.93 -0.31 -0.28 16 34 H 0.03 0.76 7.88 -51.93 -0.41 0.35 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.08 1.31 7.40 -51.93 -0.38 0.92 16 37 H 0.04 0.63 5.93 -51.93 -0.31 0.32 16 38 H 0.17 1.44 8.06 -52.48 -0.42 1.02 16 39 H 0.20 3.85 4.52 -52.48 -0.24 3.61 16 40 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 41 H 0.14 1.79 8.06 -52.48 -0.42 1.36 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -29.59 344.64 -8.48 -38.07 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: -5.84 Total: 2.53 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -3.67 Total: -13.72 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: 0.79 Total: -44.29 kcal Atomic # 9 Polarization: -4.14 SS G_CDS: 0.08 Total: -4.07 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.59 -8.48 -38.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233405015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.525 kcal (2) G-P(sol) polarization free energy of solvation -29.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds