Wall clock time and date at job start Tue Mar 31 2020 13:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47284 * 2 1 4 4 C 1.46910 * 110.99806 * 299.07006 * 3 2 1 5 5 C 1.50697 * 109.47117 * 293.95371 * 4 3 2 6 6 H 1.07999 * 120.00010 * 0.02562 * 5 4 3 7 7 C 1.37872 * 120.00170 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00119 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00223 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47403 * 90.00403 * 9 7 5 11 11 H 1.48503 * 109.47199 * 210.00302 * 9 7 5 12 12 H 1.48494 * 109.47156 * 329.99830 * 9 7 5 13 13 C 1.46896 * 111.00367 * 63.02247 * 3 2 1 14 14 C 1.50702 * 109.46956 * 70.59004 * 13 3 2 15 15 C 1.35083 * 126.08150 * 261.65679 * 14 13 3 16 16 N 1.35030 * 107.97999 * 180.02562 * 15 14 13 17 17 H 0.97005 * 125.92672 * 180.02562 * 16 15 14 18 18 N 1.40064 * 108.14428 * 359.97438 * 16 15 14 19 19 C 1.31632 * 108.10595 * 359.72509 * 18 16 15 20 20 C 1.48419 * 126.03918 * 180.27812 * 19 18 16 21 21 C 1.39299 * 120.09550 * 144.91272 * 20 19 18 22 22 C 1.38259 * 119.90083 * 179.71990 * 21 20 19 23 23 F 1.35101 * 119.94823 * 180.27374 * 22 21 20 24 24 C 1.38500 * 120.09801 * 0.55121 * 22 21 20 25 25 C 1.38501 * 120.19116 * 359.71969 * 24 22 21 26 26 F 1.35090 * 119.95317 * 180.02562 * 25 24 22 27 27 C 1.38267 * 120.09061 * 0.02562 * 25 24 22 28 28 H 1.08996 * 109.46650 * 59.53995 * 1 2 3 29 29 H 1.08996 * 109.46803 * 179.53813 * 1 2 3 30 30 H 1.08992 * 109.47120 * 299.53967 * 1 2 3 31 31 H 1.08999 * 109.47652 * 239.99817 * 2 1 3 32 32 H 1.09004 * 109.47280 * 119.99872 * 2 1 3 33 33 H 1.09001 * 109.46672 * 53.95228 * 4 3 2 34 34 H 1.08993 * 109.46913 * 173.95290 * 4 3 2 35 35 H 0.96992 * 120.00634 * 179.97438 * 8 7 5 36 36 H 1.08995 * 109.47660 * 190.59644 * 13 3 2 37 37 H 1.09003 * 109.46916 * 310.59524 * 13 3 2 38 38 H 1.08006 * 126.00424 * 0.03769 * 15 14 13 39 39 H 1.08003 * 120.04328 * 359.97438 * 21 20 19 40 40 H 1.07998 * 119.90050 * 179.74466 * 24 22 21 41 41 H 1.08003 * 120.04029 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5669 2.1035 -1.1988 5 6 2.2078 1.4966 -2.4202 6 1 2.8836 0.6605 -2.3164 7 6 1.9308 2.0079 -3.6702 8 7 1.1075 3.0258 -3.7967 9 14 2.7246 1.2552 -5.1843 10 1 1.8583 0.1695 -5.7096 11 1 2.8945 2.3003 -6.2255 12 1 4.0522 0.6975 -4.8217 13 6 1.6087 2.0888 1.2221 14 6 2.3748 1.5413 2.3988 15 6 1.9289 0.6183 3.2786 16 7 2.9079 0.3961 4.1816 17 1 2.8633 -0.2201 4.9294 18 7 3.9994 1.2089 3.8505 19 6 3.6854 1.8966 2.7728 20 6 4.5568 2.8762 2.0774 21 6 4.5079 2.9931 0.6902 22 6 5.3173 3.9111 0.0469 23 9 5.2667 4.0292 -1.2980 24 6 6.1841 4.7058 0.7787 25 6 6.2400 4.5888 2.1576 26 9 7.0868 5.3667 2.8667 27 6 5.4303 3.6771 2.8095 28 1 -0.3632 0.5210 -0.8858 29 1 -0.3633 -1.0276 -0.0083 30 1 -0.3633 0.5066 0.8940 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 0.4828 2.0260 -1.2808 34 1 1.8515 3.1528 -1.1225 35 1 0.9128 3.3858 -4.6760 36 1 1.8174 3.1533 1.1161 37 1 0.5408 1.9423 1.3840 38 1 0.9598 0.1418 3.2623 39 1 3.8358 2.3705 0.1184 40 1 6.8178 5.4189 0.2726 41 1 5.4749 3.5863 3.8847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233405015.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:44 Heat of formation + Delta-G solvation = 2.886347 kcal Electronic energy + Delta-G solvation = -27418.653159 eV Core-core repulsion = 23356.774689 eV Total energy + Delta-G solvation = -4061.878469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.01118 -49.89293 -42.28253 -39.59521 -38.75795 -34.72276 -33.83567 -32.27889 -31.21254 -30.83696 -30.75327 -28.59884 -25.93709 -25.02698 -24.82578 -23.80020 -21.95252 -21.43158 -20.50893 -18.70091 -18.41900 -18.19217 -17.96981 -17.46054 -16.95982 -16.79710 -16.69577 -16.26383 -16.18978 -15.99740 -15.48773 -15.25393 -15.11888 -14.88200 -14.53497 -14.18680 -13.81383 -13.65362 -13.20352 -13.08823 -13.03974 -12.88178 -12.81034 -12.67237 -12.42039 -12.39704 -12.33645 -11.81094 -11.63002 -11.38458 -11.16887 -10.88490 -10.51307 -9.78366 -9.70918 -9.39960 -8.77406 -8.11192 -6.17898 -0.28541 0.00888 0.97981 1.41685 1.44254 1.53946 1.65885 1.94307 2.45077 2.50267 2.82282 3.22580 3.36947 3.41928 3.58134 3.82364 3.96251 3.99355 4.18615 4.21748 4.37799 4.43744 4.57287 4.62327 4.69188 4.78765 4.81567 4.86468 4.96881 5.05472 5.13135 5.17713 5.20832 5.35951 5.40364 5.50403 5.52523 5.62810 5.77421 5.82888 6.17898 6.44648 6.49672 6.66394 6.78058 6.98524 7.50694 8.98972 Molecular weight = 321.13amu Principal moments of inertia in cm(-1) A = 0.010248 B = 0.005561 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2731.620692 B = 5033.602255 C = 7302.104911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.064 3.936 3 N -0.536 5.536 4 C 0.208 3.792 5 C -0.508 4.508 6 H 0.057 0.943 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.270 1.270 13 C 0.124 3.876 14 C -0.219 4.219 15 C 0.085 3.915 16 N -0.454 5.454 17 H 0.458 0.542 18 N -0.300 5.300 19 C 0.111 3.889 20 C 0.037 3.963 21 C -0.152 4.152 22 C 0.112 3.888 23 F -0.140 7.140 24 C -0.181 4.181 25 C 0.122 3.878 26 F -0.130 7.130 27 C -0.135 4.135 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.053 0.947 32 H 0.079 0.921 33 H -0.018 1.018 34 H -0.003 1.003 35 H 0.261 0.739 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.215 0.785 39 H 0.171 0.829 40 H 0.166 0.834 41 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.180 -3.458 17.238 17.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.063 4.063 3 N -0.259 5.259 4 C 0.082 3.918 5 C -0.546 4.546 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.572 5.572 9 Si 0.777 3.223 10 H -0.199 1.199 11 H -0.213 1.213 12 H -0.195 1.195 13 C -0.005 4.005 14 C -0.230 4.230 15 C -0.063 4.063 16 N -0.165 5.165 17 H 0.306 0.694 18 N -0.125 5.125 19 C -0.053 4.053 20 C 0.034 3.966 21 C -0.172 4.172 22 C 0.092 3.908 23 F -0.119 7.119 24 C -0.200 4.200 25 C 0.103 3.897 26 F -0.108 7.108 27 C -0.155 4.155 28 H 0.050 0.950 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.097 0.903 33 H -0.001 1.001 34 H 0.015 0.985 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.232 0.768 39 H 0.188 0.812 40 H 0.183 0.817 41 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 4.524 -3.588 17.973 18.878 hybrid contribution -1.107 0.084 -1.746 2.069 sum 3.418 -3.504 16.227 16.949 Atomic orbital electron populations 1.22261 0.98023 1.02171 1.01220 1.21919 0.93088 0.90039 1.01297 1.62098 1.59380 1.02902 1.01540 1.19384 0.92939 0.92405 0.87115 1.21385 1.26097 1.15740 0.91410 0.92447 1.25686 0.95897 0.95531 1.01876 1.70057 1.37180 1.25839 1.24155 0.85650 0.79115 0.78094 0.79410 1.19885 1.21271 1.19451 1.20293 0.96344 0.96807 0.87052 1.20006 0.95464 1.05780 1.01771 1.22745 0.96258 0.97269 0.90061 1.46133 1.10040 1.34597 1.25733 0.69420 1.77443 1.09541 1.09253 1.16270 1.20309 0.93808 0.97116 0.94075 1.17285 0.94418 0.94099 0.90751 1.22272 1.00265 0.99377 0.95268 1.17407 0.98174 0.97876 0.77313 1.91558 1.95421 1.95055 1.29865 1.21204 1.02429 1.03252 0.93155 1.16943 0.91735 0.92549 0.88468 1.91518 1.68454 1.72799 1.78055 1.21278 0.96266 0.96113 1.01829 0.94980 0.91097 0.91486 0.92876 0.90286 1.00059 0.98454 0.93063 0.92636 0.92779 0.76838 0.81224 0.81665 0.82563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.41 9.27 71.98 0.67 -4.74 16 2 C 0.06 2.19 5.73 86.30 0.49 2.68 16 3 N -0.54 -20.83 2.52 -905.36 -2.28 -23.11 16 4 C 0.21 10.33 4.12 85.55 0.35 10.68 16 5 C -0.51 -27.77 8.50 25.60 0.22 -27.56 16 6 H 0.06 3.13 7.11 -2.91 -0.02 3.11 16 7 C 0.01 0.45 5.46 84.65 0.46 0.92 16 8 N -0.93 -55.42 13.29 21.45 0.28 -55.14 16 9 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 13 C 0.12 4.00 4.22 85.56 0.36 4.36 16 14 C -0.22 -5.95 4.89 -19.95 -0.10 -6.05 16 15 C 0.09 1.59 11.09 83.47 0.93 2.51 16 16 N -0.45 -8.07 7.35 -57.68 -0.42 -8.50 16 17 H 0.46 4.35 8.96 -213.34 -1.91 2.44 16 18 N -0.30 -7.85 12.70 -48.15 -0.61 -8.46 16 19 C 0.11 3.27 6.74 42.53 0.29 3.56 16 20 C 0.04 1.15 5.80 -20.05 -0.12 1.03 16 21 C -0.15 -5.50 8.71 22.53 0.20 -5.30 16 22 C 0.11 3.94 7.29 22.34 0.16 4.11 16 23 F -0.14 -5.76 17.26 44.97 0.78 -4.99 16 24 C -0.18 -5.13 10.00 22.40 0.22 -4.91 16 25 C 0.12 3.26 7.29 22.34 0.16 3.43 16 26 F -0.13 -3.24 17.26 44.97 0.78 -2.46 16 27 C -0.13 -3.65 9.72 22.53 0.22 -3.43 16 28 H 0.03 1.22 6.27 -2.39 -0.01 1.21 16 29 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.07 1.71 6.28 -2.39 -0.02 1.69 16 31 H 0.05 2.08 6.83 -2.39 -0.02 2.06 16 32 H 0.08 2.24 6.74 -2.38 -0.02 2.22 16 33 H -0.02 -0.97 6.02 -2.39 -0.01 -0.98 16 34 H 0.00 -0.15 7.88 -2.39 -0.02 -0.17 16 35 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 36 H 0.06 2.00 7.40 -2.39 -0.02 1.98 16 37 H 0.05 1.58 5.93 -2.39 -0.01 1.57 16 38 H 0.22 2.24 8.06 -2.91 -0.02 2.21 16 39 H 0.17 7.11 4.52 -2.91 -0.01 7.09 16 40 H 0.17 3.90 8.06 -2.91 -0.02 3.87 16 41 H 0.16 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -67.19 344.64 4.25 -62.93 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -0.81 Total: 11.70 kcal Atomic # 6 Polarization: -23.23 SS G_CDS: 4.52 Total: -18.71 kcal Atomic # 7 Polarization: -92.17 SS G_CDS: -3.03 Total: -95.20 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 1.55 Total: -7.45 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -67.19 4.25 -62.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233405015.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.820 kcal (2) G-P(sol) polarization free energy of solvation -67.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds