Wall clock time and date at job start Tue Mar 31 2020 12:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42905 * 109.46728 * 2 1 4 4 C 1.35896 * 117.00039 * 179.97438 * 3 2 1 5 5 C 1.38738 * 120.05353 * 359.72616 * 4 3 2 6 6 C 1.38148 * 119.94048 * 179.74738 * 5 4 3 7 7 C 1.38261 * 120.05800 * 0.50500 * 6 5 4 8 8 C 1.50703 * 119.94589 * 179.75166 * 7 6 5 9 9 C 1.50706 * 109.46541 * 270.01711 * 8 7 6 10 10 O 1.20823 * 120.00322 * 0.02562 * 9 8 7 11 11 O 1.34224 * 119.99495 * 179.97438 * 9 8 7 12 12 C 1.45204 * 116.99756 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47267 * 180.02562 * 12 11 9 14 14 O 1.21288 * 119.99849 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00305 * 180.02562 * 13 12 11 16 16 C 1.46504 * 120.00094 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46693 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00421 * 0.02562 * 17 16 15 19 19 C 1.37877 * 119.99636 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00046 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 120.00077 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47000 * 89.99697 * 21 19 17 23 23 H 1.48494 * 109.47112 * 209.99826 * 21 19 17 24 24 H 1.48501 * 109.46878 * 329.99809 * 21 19 17 25 25 C 1.38262 * 120.11048 * 359.76434 * 7 6 5 26 26 C 1.38145 * 120.05942 * 359.97438 * 25 7 6 27 27 H 1.09000 * 109.47486 * 300.00062 * 1 2 3 28 28 H 1.09001 * 109.47362 * 60.00784 * 1 2 3 29 29 H 1.09002 * 109.46716 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47486 * 239.99938 * 2 1 3 31 31 H 1.09001 * 109.47362 * 119.99215 * 2 1 3 32 32 H 1.07995 * 120.02746 * 359.97438 * 5 4 3 33 33 H 1.08004 * 119.97067 * 180.22662 * 6 5 4 34 34 H 1.08992 * 109.47037 * 30.01395 * 8 7 6 35 35 H 1.08998 * 109.46989 * 150.02347 * 8 7 6 36 36 H 1.08999 * 109.47028 * 300.00132 * 12 11 9 37 37 H 1.09001 * 109.47111 * 60.00304 * 12 11 9 38 38 H 0.96998 * 119.99751 * 359.97438 * 15 13 12 39 39 H 1.08999 * 109.47028 * 299.99555 * 16 15 13 40 40 H 1.09001 * 109.47195 * 59.99778 * 16 15 13 41 41 H 0.97009 * 120.00169 * 180.02562 * 20 19 17 42 42 H 1.08008 * 119.97547 * 179.97438 * 25 7 6 43 43 H 1.08000 * 120.03441 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3535 1.5255 0.0005 5 6 4.1997 0.4261 0.0068 6 6 5.5689 0.6099 0.0021 7 6 6.0961 1.8881 0.0016 8 6 7.5901 2.0856 0.0021 9 6 8.0875 2.1517 1.4232 10 8 7.3088 2.0485 2.3413 11 8 9.3957 2.3243 1.6689 12 6 9.8034 2.3780 3.0615 13 6 11.2953 2.5754 3.1410 14 8 11.9506 2.6618 2.1240 15 7 11.9015 2.6548 4.3420 16 6 13.3518 2.8473 4.4193 17 6 13.7748 2.9029 5.8647 18 1 13.0373 2.8043 6.6474 19 6 15.1037 3.0786 6.1877 20 7 15.4730 3.1266 7.4489 21 14 16.3795 3.2485 4.8338 22 1 16.5337 4.6814 4.4760 23 1 17.6807 2.7143 5.3100 24 1 15.9382 2.4847 3.6392 25 6 5.2549 2.9853 0.0010 26 6 3.8850 2.8070 0.0003 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5137 0.8900 32 1 3.7884 -0.5724 0.0117 33 1 6.2281 -0.2456 0.0032 34 1 8.0671 1.2509 -0.5113 35 1 7.8338 3.0155 -0.5117 36 1 9.3004 3.2093 3.5555 37 1 9.5332 1.4446 3.5554 38 1 11.3775 2.5853 5.1553 39 1 13.8554 2.0167 3.9246 40 1 13.6212 3.7812 3.9260 41 1 16.4079 3.2506 7.6763 42 1 5.6690 3.9828 0.0011 43 1 3.2282 3.6644 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000009032968.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:15 Heat of formation + Delta-G solvation = -162.560095 kcal Electronic energy + Delta-G solvation = -25076.511424 eV Core-core repulsion = 21086.253423 eV Total energy + Delta-G solvation = -3990.258001 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81669 -41.06532 -40.39444 -38.75193 -37.42824 -36.19511 -34.46282 -33.75750 -32.36421 -31.82877 -31.11167 -29.15479 -27.79443 -24.99689 -24.23291 -23.34788 -22.65259 -21.72464 -21.50648 -19.39580 -19.24308 -18.82001 -18.12081 -17.92355 -17.09015 -17.01314 -16.97779 -16.86166 -16.24522 -16.21343 -15.78456 -15.36418 -14.84534 -14.78294 -14.47564 -14.39245 -14.36006 -14.24153 -13.79246 -13.68772 -13.40898 -13.08457 -12.97894 -12.85069 -12.70391 -12.57794 -12.54784 -11.93096 -11.87825 -11.75094 -11.69101 -11.67066 -11.54464 -10.96110 -10.92224 -10.03810 -9.96484 -9.12385 -8.39920 -6.47769 0.30070 0.38998 1.14812 1.32953 1.34676 1.39145 1.48532 1.52359 2.25036 2.28549 2.48453 2.83919 2.95583 3.61221 3.65659 3.78915 3.90034 3.93862 4.04302 4.05471 4.10313 4.12185 4.28851 4.34277 4.39225 4.50326 4.64489 4.71026 4.75112 4.88669 4.92923 5.00786 5.06229 5.18230 5.22486 5.25307 5.33560 5.36949 5.40680 5.58315 5.80305 6.05620 6.44211 6.51958 6.63311 6.74287 7.11681 7.27281 8.74634 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.038782 B = 0.001707 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.806136 B =16400.242941 C =16729.580585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.118 3.882 5 C -0.214 4.214 6 C -0.069 4.069 7 C -0.126 4.126 8 C -0.061 4.061 9 C 0.463 3.537 10 O -0.527 6.527 11 O -0.346 6.346 12 C 0.058 3.942 13 C 0.505 3.495 14 O -0.577 6.577 15 N -0.698 5.698 16 C 0.232 3.768 17 C -0.550 4.550 18 H 0.060 0.940 19 C 0.027 3.973 20 N -0.931 5.931 21 Si 0.938 3.062 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.068 4.068 26 C -0.167 4.167 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.145 0.855 33 H 0.141 0.859 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.412 0.588 39 H 0.018 0.982 40 H 0.017 0.983 41 H 0.273 0.727 42 H 0.145 0.855 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.450 -6.061 -18.768 34.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.073 3.927 5 C -0.233 4.233 6 C -0.087 4.087 7 C -0.127 4.127 8 C -0.098 4.098 9 C 0.307 3.693 10 O -0.416 6.416 11 O -0.262 6.262 12 C -0.019 4.019 13 C 0.291 3.709 14 O -0.457 6.457 15 N -0.349 5.349 16 C 0.109 3.891 17 C -0.588 4.588 18 H 0.079 0.921 19 C -0.173 4.173 20 N -0.569 5.569 21 Si 0.761 3.239 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.086 4.086 26 C -0.185 4.185 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.248 0.752 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.082 0.918 42 H 0.163 0.837 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -28.198 -5.877 -19.047 34.532 hybrid contribution 0.650 -0.072 0.654 0.925 sum -27.548 -5.950 -18.393 33.654 Atomic orbital electron populations 1.21808 0.91547 1.04161 1.03169 1.23056 0.96881 0.80803 1.02226 1.86054 1.18944 1.31290 1.88546 1.19249 0.82666 0.94687 0.96080 1.21420 0.94202 0.98759 1.08886 1.21090 0.94838 0.97105 0.95710 1.19339 0.93752 0.93916 1.05657 1.20371 0.91994 1.08921 0.88534 1.24447 0.79193 0.71650 0.94031 1.90688 1.56740 1.46426 1.47764 1.86561 1.27701 1.82968 1.28965 1.22677 0.91062 1.06592 0.81525 1.20593 0.89930 0.76834 0.83568 1.90678 1.67509 1.51647 1.35874 1.45875 1.09555 1.71663 1.07830 1.19175 0.77987 0.95869 0.96080 1.21284 0.94546 1.51882 0.91052 0.92144 1.25598 1.00437 0.93621 0.97676 1.69981 1.18358 1.49954 1.18635 0.85852 0.78646 0.79626 0.79750 1.18958 1.19904 1.18226 1.21083 0.92151 0.99459 0.95935 1.20609 0.95569 0.95306 1.07062 0.92061 0.91686 0.88246 0.90863 0.91510 0.83721 0.84096 0.84346 0.84318 0.86219 0.86208 0.75163 0.96419 0.96540 0.91821 0.83719 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 71.98 0.74 -0.41 16 2 C 0.04 0.49 5.46 71.98 0.39 0.89 16 3 O -0.33 -6.00 10.14 -92.39 -0.94 -6.94 16 4 C 0.12 2.23 6.69 22.51 0.15 2.38 16 5 C -0.21 -3.52 9.04 22.37 0.20 -3.32 16 6 C -0.07 -1.14 9.69 22.25 0.22 -0.92 16 7 C -0.13 -2.14 4.38 -19.85 -0.09 -2.23 16 8 C -0.06 -0.90 5.94 29.10 0.17 -0.73 16 9 C 0.46 10.60 7.95 71.24 0.57 11.16 16 10 O -0.53 -14.71 15.78 21.97 0.35 -14.36 16 11 O -0.35 -9.43 9.75 -45.00 -0.44 -9.87 16 12 C 0.06 1.57 5.94 71.24 0.42 1.99 16 13 C 0.50 18.42 7.91 87.66 0.69 19.11 16 14 O -0.58 -25.83 16.50 15.74 0.26 -25.57 16 15 N -0.70 -26.91 5.55 -466.76 -2.59 -29.49 16 16 C 0.23 11.09 4.50 85.63 0.39 11.48 16 17 C -0.55 -29.81 9.83 25.60 0.25 -29.56 16 18 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 19 C 0.03 1.52 5.47 84.66 0.46 1.98 16 20 N -0.93 -55.04 13.96 21.45 0.30 -54.74 16 21 Si 0.94 43.26 27.47 68.60 1.88 45.15 16 22 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.26 -11.73 6.54 99.48 0.65 -11.08 16 25 C -0.07 -1.16 9.69 22.25 0.22 -0.95 16 26 C -0.17 -3.05 9.99 22.37 0.22 -2.83 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.07 0.62 7.68 -2.39 -0.02 0.60 16 31 H 0.07 0.66 7.65 -2.39 -0.02 0.65 16 32 H 0.15 1.72 6.30 -2.91 -0.02 1.71 16 33 H 0.14 1.76 8.06 -2.91 -0.02 1.73 16 34 H 0.14 1.43 8.08 -2.39 -0.02 1.42 16 35 H 0.14 1.45 8.08 -2.39 -0.02 1.43 16 36 H 0.12 2.74 8.13 -2.39 -0.02 2.72 16 37 H 0.12 2.74 8.13 -2.39 -0.02 2.72 16 38 H 0.41 13.66 8.32 -92.71 -0.77 12.89 16 39 H 0.02 0.89 7.20 -2.39 -0.02 0.88 16 40 H 0.02 0.82 7.57 -2.39 -0.02 0.80 16 41 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 42 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 43 H 0.14 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -74.93 374.56 4.04 -70.89 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.20 Total: 16.91 kcal Atomic # 6 Polarization: 3.02 SS G_CDS: 5.01 Total: 8.03 kcal Atomic # 7 Polarization: -81.94 SS G_CDS: -2.29 Total: -84.23 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -0.77 Total: -56.75 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Total: -74.93 4.04 -70.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000009032968.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.666 kcal (2) G-P(sol) polarization free energy of solvation -74.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds