Wall clock time and date at job start Tue Mar 31 2020 12:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86796 * 120.00274 * 2 1 4 4 H 1.48503 * 109.47253 * 274.65929 * 3 2 1 5 5 H 1.48504 * 109.46982 * 34.66042 * 3 2 1 6 6 H 1.48498 * 109.47348 * 154.65711 * 3 2 1 7 7 C 1.39942 * 119.99641 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99801 * 162.19403 * 7 2 1 9 9 C 1.41440 * 120.00091 * 342.19320 * 7 2 1 10 10 C 1.40777 * 120.17924 * 335.20574 * 9 7 2 11 11 C 1.37711 * 120.04164 * 179.97438 * 10 9 7 12 12 C 1.38374 * 120.40969 * 359.74748 * 11 10 9 13 13 C 1.39875 * 120.35756 * 0.51056 * 12 11 10 14 14 C 1.47889 * 120.02421 * 179.76595 * 13 12 11 15 15 O 1.21541 * 119.99846 * 179.72544 * 14 13 12 16 16 N 1.34779 * 120.00009 * 359.72170 * 14 13 12 17 17 C 1.46494 * 119.99919 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.24836 * 324.46893 * 17 16 14 19 19 C 1.52735 * 109.25188 * 205.00045 * 17 16 14 20 20 C 1.53329 * 108.38345 * 188.71861 * 19 17 16 21 21 C 1.52743 * 108.36753 * 69.91739 * 20 19 17 22 22 C 1.50628 * 110.55086 * 308.91520 * 21 20 19 23 23 C 1.38910 * 117.74476 * 197.52970 * 22 21 20 24 24 C 1.37942 * 120.54212 * 180.23129 * 23 22 21 25 25 C 1.38262 * 119.77112 * 0.02562 * 24 23 22 26 26 C 1.37711 * 119.75335 * 359.86382 * 25 24 23 27 27 C 1.37586 * 122.62304 * 17.58123 * 22 21 20 28 28 C 1.39034 * 119.94890 * 359.48976 * 13 12 11 29 29 H 0.96998 * 119.99856 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.98130 * 359.95599 * 10 9 7 31 31 H 1.07999 * 119.79383 * 180.02562 * 11 10 9 32 32 H 1.08000 * 119.81754 * 180.27160 * 12 11 10 33 33 H 0.97003 * 119.99643 * 0.02562 * 16 14 13 34 34 H 1.08992 * 109.68046 * 68.99808 * 19 17 16 35 35 H 1.09000 * 109.68183 * 308.44350 * 19 17 16 36 36 H 1.09002 * 109.68747 * 310.20317 * 20 19 17 37 37 H 1.08998 * 109.68543 * 189.63441 * 20 19 17 38 38 H 1.09001 * 109.25084 * 69.18306 * 21 20 19 39 39 H 1.09000 * 109.25650 * 188.65037 * 21 20 19 40 40 H 1.07999 * 119.73017 * 0.20467 * 23 22 21 41 41 H 1.07999 * 120.11068 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.11200 * 179.91612 * 25 24 23 43 43 H 1.08002 * 119.67116 * 180.02562 * 26 25 24 44 44 H 1.08002 * 120.19984 * 180.23193 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3914 2.1032 -1.3955 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5993 7 6 2.0079 -1.2120 -0.0005 8 1 3.0491 -1.2343 -0.2866 9 6 1.3515 -2.4077 0.3735 10 6 0.2244 -2.3626 1.2158 11 6 -0.4129 -3.5284 1.5777 12 6 0.0442 -4.7495 1.1143 13 6 1.1657 -4.8145 0.2809 14 6 1.6510 -6.1239 -0.2059 15 8 2.6226 -6.1794 -0.9341 16 7 1.0159 -7.2556 0.1578 17 6 1.4969 -8.5527 -0.3241 18 1 1.8736 -8.4411 -1.3408 19 6 0.3410 -9.5510 -0.3219 20 6 0.9059 -10.9457 -0.6163 21 6 1.7231 -11.3989 0.5919 22 6 2.7173 -10.3381 0.9859 23 6 3.7748 -10.7148 1.8040 24 6 4.7161 -9.7890 2.2037 25 6 4.6066 -8.4750 1.7876 26 6 3.5600 -8.1006 0.9747 27 6 2.6118 -9.0311 0.5690 28 6 1.8205 -3.6466 -0.0939 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1406 -1.4130 1.5785 31 1 -1.2775 -3.4891 2.2238 32 1 -0.4655 -5.6576 1.4006 33 1 0.2403 -7.2112 0.7387 34 1 -0.3814 -9.2777 -1.0909 35 1 -0.1434 -9.5497 0.6546 36 1 1.5460 -10.9040 -1.4977 37 1 0.0874 -11.6444 -0.7890 38 1 1.0514 -11.5905 1.4287 39 1 2.2563 -12.3160 0.3417 40 1 3.8606 -11.7408 2.1301 41 1 5.5357 -10.0896 2.8395 42 1 5.3397 -7.7454 2.0984 43 1 3.4760 -7.0739 0.6501 44 1 2.6846 -3.6918 -0.7402 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042200749.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:22:10 Heat of formation + Delta-G solvation = -6.193357 kcal Electronic energy + Delta-G solvation = -25986.227862 eV Core-core repulsion = 22445.892446 eV Total energy + Delta-G solvation = -3540.335416 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.54367 -38.88842 -37.10675 -36.26759 -34.12192 -33.72742 -31.33619 -30.25515 -29.93315 -29.62970 -28.15084 -25.35549 -23.91197 -22.83963 -22.56547 -21.62563 -20.69094 -19.82905 -19.47954 -17.82274 -16.78522 -16.09711 -15.97886 -15.42617 -15.24644 -15.12534 -14.65392 -14.48948 -14.06410 -13.78149 -13.64987 -13.30303 -13.12569 -12.81714 -12.75024 -12.53678 -12.43425 -12.16246 -11.74979 -11.67603 -11.41199 -11.21670 -11.16654 -11.06734 -10.75339 -10.67679 -10.56020 -10.47057 -10.20350 -9.57630 -9.24002 -9.20687 -8.84263 -8.61804 -8.53143 -7.65542 -7.56131 -6.84890 -4.44749 1.40229 1.49746 2.13905 2.72242 3.04636 3.07351 3.13520 3.52300 3.78227 3.88908 3.92273 4.50945 4.55043 4.63311 4.78208 4.89900 4.98950 5.09688 5.22095 5.33931 5.37731 5.47725 5.53435 5.58493 5.62002 5.71897 5.78216 5.87150 5.93964 6.06834 6.11041 6.14564 6.19562 6.21453 6.54929 6.64979 6.67772 6.85209 6.86775 6.90841 6.98395 7.12041 7.13796 7.33158 7.60753 7.77607 7.91838 7.93663 8.16216 8.50078 8.74528 8.79382 8.82162 10.10734 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021985 B = 0.002881 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.275267 B = 9716.606647 C =10359.435350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.459 4.459 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.142 4.142 11 C -0.111 4.111 12 C -0.208 4.208 13 C -0.120 4.120 14 C 0.566 3.434 15 O -0.548 6.548 16 N -0.728 5.728 17 C 0.186 3.814 18 H 0.096 0.904 19 C -0.125 4.125 20 C -0.115 4.115 21 C -0.080 4.080 22 C -0.075 4.075 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.101 4.101 27 C -0.091 4.091 28 C -0.155 4.155 29 H 0.282 0.718 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.401 0.599 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.117 0.883 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.138 0.862 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.450 -17.729 3.162 18.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.162 4.162 11 C -0.130 4.130 12 C -0.228 4.228 13 C -0.123 4.123 14 C 0.357 3.643 15 O -0.428 6.428 16 N -0.380 5.380 17 C 0.081 3.919 18 H 0.114 0.886 19 C -0.163 4.163 20 C -0.153 4.153 21 C -0.116 4.116 22 C -0.076 4.076 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.146 4.146 26 C -0.119 4.119 27 C -0.092 4.092 28 C -0.175 4.175 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.237 0.763 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.156 0.844 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.930 -17.596 2.614 17.813 hybrid contribution -0.019 0.845 0.364 0.920 sum 0.912 -16.751 2.978 17.038 Atomic orbital electron populations 1.69803 1.07617 1.29403 1.35065 1.25912 0.94748 1.01430 0.92128 0.86281 0.80786 0.80463 0.79154 1.19488 1.19999 1.18317 1.19603 0.98285 0.91025 1.39944 0.90114 1.17580 0.91557 0.91847 0.89343 1.21501 0.98515 0.97054 0.99121 1.20613 0.99105 0.92999 1.00274 1.20394 0.99800 0.96461 1.06179 1.19301 0.98973 0.91309 1.02676 1.18883 0.82012 0.84443 0.78916 1.90676 1.27160 1.87574 1.37364 1.46082 1.33824 1.05074 1.53038 1.19645 0.91948 0.82788 0.97470 0.88614 1.21810 0.97143 0.94480 1.02904 1.21505 0.99604 0.95995 0.98234 1.20478 0.96448 0.96478 0.98243 1.19552 0.96409 0.93727 0.97894 1.21037 0.95239 0.99295 0.99445 1.21059 0.98955 0.93621 1.00144 1.21090 0.98647 0.96186 0.98656 1.21725 0.93173 1.01231 0.95727 1.19989 0.97252 0.92886 0.99079 1.21208 1.02137 0.91186 1.02970 0.90740 0.86081 0.88806 0.89188 0.76281 0.90585 0.90991 0.91252 0.90954 0.90690 0.90843 0.86540 0.86442 0.86237 0.84416 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.96 10.97 55.55 0.61 -19.35 16 2 C 0.08 1.86 5.13 -17.34 -0.09 1.77 16 3 Si 0.91 18.36 29.59 -169.99 -5.03 13.33 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -12.02 9.05 -37.73 -0.34 -12.37 16 8 H 0.08 2.05 7.91 -52.49 -0.41 1.64 16 9 C 0.10 2.59 5.57 -106.87 -0.59 2.00 16 10 C -0.14 -3.54 8.69 -38.82 -0.34 -3.87 16 11 C -0.11 -2.44 10.01 -39.72 -0.40 -2.84 16 12 C -0.21 -4.29 9.55 -38.92 -0.37 -4.66 16 13 C -0.12 -2.66 5.87 -105.04 -0.62 -3.28 16 14 C 0.57 11.36 6.28 -12.31 -0.08 11.29 16 15 O -0.55 -12.33 14.08 5.33 0.08 -12.26 16 16 N -0.73 -11.41 4.80 -56.03 -0.27 -11.68 16 17 C 0.19 2.57 2.59 -69.25 -0.18 2.39 16 18 H 0.10 1.48 7.58 -51.93 -0.39 1.09 16 19 C -0.13 -1.26 5.43 -26.70 -0.14 -1.40 16 20 C -0.12 -0.98 5.98 -26.69 -0.16 -1.14 16 21 C -0.08 -0.70 5.67 -28.05 -0.16 -0.86 16 22 C -0.08 -0.91 5.73 -104.65 -0.60 -1.51 16 23 C -0.13 -1.51 9.61 -39.44 -0.38 -1.89 16 24 C -0.12 -1.45 10.05 -39.68 -0.40 -1.85 16 25 C -0.13 -1.82 10.04 -39.76 -0.40 -2.22 16 26 C -0.10 -1.64 8.98 -39.52 -0.35 -2.00 16 27 C -0.09 -1.31 5.55 -104.64 -0.58 -1.89 16 28 C -0.15 -3.86 9.34 -38.44 -0.36 -4.22 16 29 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 30 H 0.12 3.09 6.17 -52.49 -0.32 2.76 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 33 H 0.40 5.55 6.61 -40.82 -0.27 5.28 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 40 H 0.12 1.03 8.05 -52.49 -0.42 0.61 16 41 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 43 H 0.14 2.64 4.37 -52.49 -0.23 2.41 16 44 H 0.11 2.72 7.64 -52.49 -0.40 2.32 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -28.76 355.79 -11.52 -40.28 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -5.72 Total: 12.86 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: -6.54 Total: -28.55 kcal Atomic # 7 Polarization: -31.37 SS G_CDS: 0.34 Total: -31.03 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.08 Total: -12.26 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.03 Total: 13.33 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.76 -11.52 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042200749.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.086 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds