Wall clock time and date at job start Tue Mar 31 2020 12:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86805 * 119.99562 * 2 1 4 4 H 1.48503 * 109.46767 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47271 * 299.99952 * 3 2 1 6 6 H 1.48500 * 109.47299 * 60.00311 * 3 2 1 7 7 C 1.39932 * 120.00031 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99881 * 162.59888 * 7 2 1 9 9 C 1.41431 * 120.00522 * 342.59908 * 7 2 1 10 10 C 1.40783 * 120.18036 * 154.91485 * 9 7 2 11 11 C 1.37711 * 120.04050 * 180.02562 * 10 9 7 12 12 C 1.38369 * 120.41249 * 359.78767 * 11 10 9 13 13 C 1.39885 * 120.35839 * 0.46946 * 12 11 10 14 14 C 1.47888 * 120.02694 * 179.78978 * 13 12 11 15 15 O 1.21543 * 119.99981 * 179.71772 * 14 13 12 16 16 N 1.34775 * 119.99829 * 359.72423 * 14 13 12 17 17 C 1.46503 * 120.00128 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.46837 * 34.99162 * 17 16 14 19 19 C 1.50689 * 109.47356 * 154.99489 * 17 16 14 20 20 C 1.38234 * 120.00050 * 220.00100 * 19 17 16 21 21 C 1.38235 * 120.00269 * 180.02562 * 20 19 17 22 22 C 1.38242 * 119.99903 * 359.95305 * 21 20 19 23 23 C 1.38230 * 119.99724 * 0.27551 * 22 21 20 24 24 C 1.38238 * 120.00425 * 359.53679 * 23 22 21 25 25 C 1.52999 * 109.46715 * 274.99943 * 17 16 14 26 26 C 1.53003 * 117.49766 * 128.62160 * 25 17 16 27 27 C 1.52996 * 117.50345 * 59.99959 * 25 17 16 28 28 C 1.39029 * 119.94741 * 359.50820 * 13 12 11 29 29 H 0.96995 * 120.00389 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.98011 * 0.02562 * 10 9 7 31 31 H 1.07998 * 119.79409 * 180.02562 * 11 10 9 32 32 H 1.08005 * 119.82385 * 180.23407 * 12 11 10 33 33 H 0.97000 * 120.00177 * 359.97438 * 16 14 13 34 34 H 1.08003 * 120.00140 * 359.97438 * 20 19 17 35 35 H 1.07996 * 120.00555 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.00180 * 180.02562 * 22 21 20 37 37 H 1.08000 * 119.99988 * 179.72570 * 23 22 21 38 38 H 1.07991 * 120.00368 * 180.20285 * 24 23 22 39 39 H 1.08996 * 115.54736 * 274.32317 * 25 17 16 40 40 H 1.09000 * 117.50279 * 359.97438 * 26 25 17 41 41 H 1.09008 * 117.49905 * 145.01866 * 26 25 17 42 42 H 1.08999 * 117.49965 * 214.97962 * 27 25 17 43 43 H 1.09001 * 117.49834 * 359.97346 * 27 25 17 44 44 H 1.08001 * 120.20598 * 180.23252 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 3.7022 1.3465 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8834 2.3965 1.2125 7 6 2.0079 -1.2118 0.0005 8 1 3.0509 -1.2333 -0.2792 9 6 1.3494 -2.4086 0.3674 10 6 1.8190 -3.6485 -0.1060 11 6 1.1753 -4.8119 0.2526 12 6 0.0682 -4.7729 1.0816 13 6 -0.4161 -3.5499 1.5574 14 6 -1.6027 -3.5164 2.4393 15 8 -2.0200 -2.4539 2.8566 16 7 -2.2214 -4.6642 2.7804 17 6 -3.3972 -4.6311 3.6537 18 1 -3.9821 -3.7360 3.4417 19 6 -4.2421 -5.8538 3.4051 20 6 -5.6203 -5.7487 3.3824 21 6 -6.3954 -6.8705 3.1549 22 6 -5.7923 -8.0972 2.9491 23 6 -4.4144 -8.2032 2.9765 24 6 -3.6391 -7.0807 3.2001 25 6 -2.9463 -4.6112 5.1156 26 6 -3.5320 -3.5255 6.0208 27 6 -2.0725 -3.4402 5.5696 28 6 0.2226 -2.3662 1.2053 29 1 -0.4850 0.8400 0.0004 30 1 2.6846 -3.6873 -0.7507 31 1 1.5392 -5.7609 -0.1125 32 1 -0.4271 -5.6915 1.3598 33 1 -1.8885 -5.5122 2.4472 34 1 -6.0915 -4.7903 3.5433 35 1 -7.4721 -6.7885 3.1376 36 1 -6.3979 -8.9736 2.7710 37 1 -3.9433 -9.1624 2.8201 38 1 -2.5624 -7.1629 3.2183 39 1 -2.7514 -5.5868 5.5607 40 1 -4.2381 -2.8252 5.5747 41 1 -3.7225 -3.7869 7.0618 42 1 -1.3029 -3.6455 6.3136 43 1 -1.8185 -2.6842 4.8266 44 1 -0.1455 -1.4199 1.5733 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049623021.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:27 Heat of formation + Delta-G solvation = 29.728938 kcal Electronic energy + Delta-G solvation = -25994.531278 eV Core-core repulsion = 22455.753570 eV Total energy + Delta-G solvation = -3538.777708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.17150 -38.83576 -37.39203 -36.48145 -34.15762 -33.66075 -31.46283 -30.98067 -29.92909 -29.43013 -26.52787 -25.23374 -23.02638 -22.41191 -22.12082 -21.86841 -20.97505 -20.02162 -19.50328 -17.92001 -17.03057 -16.14734 -15.98562 -15.52521 -15.17795 -15.05222 -14.63498 -14.61232 -14.34945 -13.77769 -13.49796 -13.29338 -13.12402 -12.80486 -12.77056 -12.53825 -12.39442 -11.77220 -11.64554 -11.34461 -11.27567 -11.13853 -11.11976 -11.06599 -10.71832 -10.49495 -10.18443 -10.08508 -10.00134 -9.69147 -9.22672 -9.07245 -9.04120 -8.82501 -8.58079 -7.63513 -7.52076 -6.80259 -4.41768 1.20171 1.27727 2.19614 2.80310 3.07972 3.12605 3.14470 3.46953 3.69791 3.86503 3.92009 4.13324 4.54860 4.62930 4.76289 4.85656 4.97719 5.03770 5.19399 5.24686 5.31343 5.38689 5.44787 5.59796 5.68493 5.78667 5.82463 5.85715 5.94285 6.06818 6.14179 6.25373 6.26745 6.33296 6.37587 6.47171 6.60802 6.71699 6.85920 6.90082 6.98766 7.01774 7.20801 7.37817 7.69473 7.75717 7.91974 8.09191 8.18723 8.50368 8.80159 8.82978 8.94764 10.14515 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016715 B = 0.003257 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1674.723055 B = 8595.196361 C = 9401.925488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.260 1.260 5 H -0.274 1.274 6 H -0.270 1.270 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.211 4.211 11 C -0.098 4.098 12 C -0.217 4.217 13 C -0.127 4.127 14 C 0.569 3.431 15 O -0.543 6.543 16 N -0.727 5.727 17 C 0.216 3.784 18 H 0.094 0.906 19 C -0.079 4.079 20 C -0.106 4.106 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.117 4.117 24 C -0.113 4.113 25 C -0.165 4.165 26 C -0.172 4.172 27 C -0.178 4.178 28 C -0.091 4.091 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.398 0.602 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 -11.609 7.522 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.146 4.146 3 Si 0.733 3.267 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.096 3.904 10 C -0.231 4.231 11 C -0.116 4.116 12 C -0.237 4.237 13 C -0.131 4.131 14 C 0.360 3.640 15 O -0.422 6.422 16 N -0.381 5.381 17 C 0.111 3.889 18 H 0.112 0.888 19 C -0.080 4.080 20 C -0.125 4.125 21 C -0.137 4.137 22 C -0.142 4.142 23 C -0.135 4.135 24 C -0.131 4.131 25 C -0.184 4.184 26 C -0.210 4.210 27 C -0.215 4.215 28 C -0.111 4.111 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.142 0.858 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.882 -10.671 7.792 16.500 hybrid contribution 0.437 0.125 -0.209 0.500 sum -9.446 -10.546 7.583 16.061 Atomic orbital electron populations 1.69794 1.07548 1.29645 1.33782 1.25956 0.94769 1.01517 0.92319 0.86248 0.80889 0.80875 0.78682 1.18356 1.19936 1.19547 1.19612 0.98065 0.90999 1.40203 0.90076 1.17606 0.91212 0.92452 0.89124 1.21105 1.03460 0.92834 1.05685 1.20428 0.96094 0.96732 0.98353 1.20336 1.01402 0.94639 1.07366 1.19456 0.96515 0.95301 1.01800 1.18802 0.83074 0.82785 0.79298 1.90618 1.66256 1.30136 1.55152 1.46081 1.30640 1.09988 1.51354 1.19233 0.86058 0.95883 0.87709 0.88781 1.19925 0.94059 0.94568 0.99419 1.21018 0.92895 0.98964 0.99585 1.21123 0.99777 0.92740 1.00012 1.21150 0.94909 0.97623 1.00525 1.21124 0.93964 0.98425 0.99999 1.20986 1.00015 0.92209 0.99916 1.22599 1.06451 0.94802 0.94543 1.22897 0.97700 1.01517 0.98891 1.23341 0.92923 1.01320 1.03913 1.21627 0.96385 0.96380 0.96711 0.90516 0.88634 0.88938 0.89392 0.76551 0.85851 0.86027 0.86205 0.85986 0.86000 0.88147 0.88814 0.89259 0.89557 0.85800 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.63 10.97 55.55 0.61 -20.02 16 2 C 0.07 1.85 5.14 -17.35 -0.09 1.76 16 3 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.46 -12.02 9.05 -37.73 -0.34 -12.37 16 8 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 9 C 0.10 2.59 5.57 -106.87 -0.59 1.99 16 10 C -0.21 -4.99 9.78 -38.81 -0.38 -5.37 16 11 C -0.10 -2.08 10.01 -39.73 -0.40 -2.47 16 12 C -0.22 -4.55 9.55 -38.92 -0.37 -4.92 16 13 C -0.13 -2.97 5.87 -105.04 -0.62 -3.59 16 14 C 0.57 12.11 7.10 -12.31 -0.09 12.02 16 15 O -0.54 -12.87 13.36 5.33 0.07 -12.80 16 16 N -0.73 -12.10 4.96 -55.87 -0.28 -12.38 16 17 C 0.22 3.14 2.47 -69.09 -0.17 2.97 16 18 H 0.09 1.53 7.20 -51.93 -0.37 1.16 16 19 C -0.08 -0.99 4.93 -104.63 -0.52 -1.50 16 20 C -0.11 -1.20 9.67 -39.58 -0.38 -1.58 16 21 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.11 -1.28 9.06 -39.58 -0.36 -1.64 16 25 C -0.16 -2.24 5.34 -90.62 -0.48 -2.73 16 26 C -0.17 -2.22 10.18 -26.73 -0.27 -2.49 16 27 C -0.18 -2.73 9.73 -26.73 -0.26 -2.99 16 28 C -0.09 -2.40 8.23 -38.44 -0.32 -2.71 16 29 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 30 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 31 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 32 H 0.09 1.53 6.38 -52.48 -0.33 1.20 16 33 H 0.40 5.92 4.89 -40.82 -0.20 5.72 16 34 H 0.12 1.26 8.04 -52.48 -0.42 0.84 16 35 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 37 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.12 1.28 6.92 -52.49 -0.36 0.92 16 39 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 40 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 41 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 42 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.12 2.35 5.01 -51.93 -0.26 2.09 16 44 H 0.13 3.80 5.76 -52.49 -0.30 3.50 16 LS Contribution 365.14 15.07 5.50 5.50 Total: -1.00 -28.95 365.14 -11.56 -40.51 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -5.60 Total: 15.78 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: -6.83 Total: -30.29 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.33 Total: -32.39 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.07 Total: -12.80 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.95 -11.56 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049623021.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.242 kcal (2) G-P(sol) polarization free energy of solvation -28.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds