Wall clock time and date at job start Tue Mar 31 2020 12:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99981 * 2 1 4 4 H 1.48499 * 109.47133 * 269.99499 * 3 2 1 5 5 H 1.48500 * 109.47260 * 30.00183 * 3 2 1 6 6 H 1.48499 * 109.47049 * 149.99700 * 3 2 1 7 7 C 1.37881 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00176 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99683 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46981 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47438 * 305.00102 * 10 9 7 12 12 N 1.46901 * 109.47060 * 65.00082 * 10 9 7 13 13 C 1.46900 * 110.99832 * 205.00106 * 12 10 9 14 14 C 1.50703 * 109.47010 * 180.02562 * 13 12 10 15 15 C 1.33994 * 124.92806 * 89.98204 * 14 13 12 16 16 C 1.46780 * 106.18892 * 180.02562 * 15 14 13 17 17 C 1.39406 * 134.36740 * 179.97438 * 16 15 14 18 18 C 1.36736 * 119.71519 * 180.02562 * 17 16 15 19 19 C 1.38743 * 120.41736 * 359.96699 * 18 17 16 20 20 C 1.37855 * 120.68498 * 0.02562 * 19 18 17 21 21 C 1.38944 * 119.81775 * 0.02562 * 20 19 18 22 22 O 1.34453 * 124.92240 * 270.01986 * 14 13 12 23 23 C 1.50695 * 109.47082 * 184.99910 * 10 9 7 24 24 C 1.38230 * 120.00116 * 279.72401 * 23 10 9 25 25 C 1.38243 * 119.99926 * 179.80856 * 24 23 10 26 26 C 1.38229 * 119.99729 * 0.40359 * 25 24 23 27 27 C 1.38234 * 120.00512 * 359.85296 * 26 25 24 28 28 C 1.38235 * 119.99551 * 359.95554 * 27 26 25 29 29 H 0.96994 * 120.00154 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.47046 * 60.00291 * 9 7 2 31 31 H 1.09000 * 109.47022 * 299.99646 * 9 7 2 32 32 H 1.00897 * 111.00640 * 81.04786 * 12 10 9 33 33 H 1.08995 * 109.47571 * 60.00047 * 13 12 10 34 34 H 1.09000 * 109.47466 * 299.99634 * 13 12 10 35 35 H 1.08002 * 126.90189 * 0.05904 * 15 14 13 36 36 H 1.07997 * 120.14676 * 359.97438 * 17 16 15 37 37 H 1.07997 * 119.79164 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.66172 * 180.29238 * 19 18 17 39 39 H 1.07999 * 120.08818 * 180.02562 * 20 19 18 40 40 H 1.07999 * 120.00114 * 0.02562 * 24 23 10 41 41 H 1.08003 * 119.99758 * 180.23320 * 25 24 23 42 42 H 1.08010 * 119.99821 * 179.82908 * 26 25 24 43 43 H 1.07999 * 120.00428 * 179.97438 * 27 26 25 44 44 H 1.08007 * 119.99734 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9294 -3.5553 -0.8423 12 7 3.0083 -3.6539 1.2547 13 6 4.3094 -4.3141 1.0841 14 6 5.0616 -4.2869 2.3897 15 6 4.9930 -5.2345 3.3345 16 6 5.8801 -4.7964 4.4188 17 6 6.2409 -5.3254 5.6570 18 6 7.1192 -4.6457 6.4546 19 6 7.6531 -3.4345 6.0387 20 6 7.3081 -2.8959 4.8175 21 6 6.4164 -3.5700 3.9922 22 8 5.8983 -3.3077 2.7757 23 6 1.4958 -4.9636 -0.1243 24 6 0.8991 -5.5261 0.9884 25 6 0.2082 -6.7181 0.8740 26 6 0.1214 -7.3517 -0.3515 27 6 0.7227 -6.7919 -1.4632 28 6 1.4101 -5.5980 -1.3496 29 1 -0.4850 0.8400 -0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6247 -2.5571 0.8897 32 1 2.4811 -4.0815 2.0013 33 1 4.8856 -3.7902 0.3215 34 1 4.1547 -5.3482 0.7760 35 1 4.4039 -6.1392 3.3041 36 1 5.8279 -6.2677 5.9854 37 1 7.3999 -5.0546 7.4139 38 1 8.3494 -2.9102 6.6763 39 1 7.7297 -1.9526 4.5032 40 1 0.9695 -5.0327 1.9465 41 1 -0.2612 -7.1557 1.7427 42 1 -0.4160 -8.2844 -0.4403 43 1 0.6551 -7.2871 -2.4206 44 1 1.8795 -5.1604 -2.2183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130464521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:41 Heat of formation + Delta-G solvation = 54.576938 kcal Electronic energy + Delta-G solvation = -25628.099383 eV Core-core repulsion = 22090.399165 eV Total energy + Delta-G solvation = -3537.700218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.35270 -39.30469 -37.91287 -36.25738 -33.34734 -32.50934 -31.46656 -30.66456 -30.41014 -29.33892 -28.40897 -25.53445 -24.09928 -22.82511 -22.35441 -21.91257 -21.68932 -20.80538 -19.75425 -17.31761 -17.31552 -16.56562 -16.12005 -16.06544 -15.51740 -15.00290 -14.88288 -14.50933 -14.31325 -14.06001 -13.75062 -13.61477 -13.35791 -13.10199 -13.02947 -12.60030 -12.49450 -12.28765 -12.09462 -12.05291 -11.65364 -11.27562 -11.04225 -10.96674 -10.81059 -10.69546 -10.51193 -10.22111 -10.07908 -9.67333 -9.04230 -8.68052 -8.62267 -8.32757 -8.26093 -8.15612 -7.83604 -5.89106 -3.87584 0.90126 1.35435 1.63470 1.64611 2.38726 2.80168 3.39602 3.45977 3.51917 3.69820 4.05026 4.37151 4.56752 4.65813 4.80790 4.87134 5.09953 5.10394 5.13415 5.20403 5.22033 5.26072 5.32953 5.39199 5.47436 5.49359 5.64016 5.75054 5.77352 5.81131 5.85551 6.02807 6.21907 6.22944 6.24596 6.30314 6.37871 6.45932 6.66377 6.69708 6.71804 6.72762 6.90424 7.26293 7.29044 7.36582 7.59244 7.86944 7.91205 8.10603 8.53234 9.17247 9.74163 11.22662 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007834 B = 0.004395 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.496998 B = 6368.965664 C = 9352.475169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.053 3.947 3 Si 0.889 3.111 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.274 1.274 7 C -0.492 4.492 8 H 0.060 0.940 9 C 0.043 3.957 10 C 0.130 3.870 11 H 0.079 0.921 12 N -0.654 5.654 13 C 0.126 3.874 14 C 0.067 3.933 15 C -0.219 4.219 16 C -0.125 4.125 17 C -0.075 4.075 18 C -0.140 4.140 19 C -0.101 4.101 20 C -0.104 4.104 21 C 0.052 3.948 22 O -0.180 6.180 23 C -0.094 4.094 24 C -0.120 4.120 25 C -0.118 4.118 26 C -0.136 4.136 27 C -0.121 4.121 28 C -0.116 4.116 29 H 0.258 0.742 30 H 0.022 0.978 31 H 0.020 0.980 32 H 0.338 0.662 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.069 -15.104 7.020 19.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.147 4.147 3 Si 0.717 3.283 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.199 1.199 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.005 3.995 10 C 0.021 3.979 11 H 0.097 0.903 12 N -0.285 5.285 13 C -0.003 4.003 14 C 0.019 3.981 15 C -0.239 4.239 16 C -0.126 4.126 17 C -0.093 4.093 18 C -0.158 4.158 19 C -0.120 4.120 20 C -0.123 4.123 21 C 0.004 3.996 22 O -0.080 6.080 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.136 4.136 26 C -0.154 4.154 27 C -0.139 4.139 28 C -0.134 4.134 29 H 0.067 0.933 30 H 0.040 0.960 31 H 0.038 0.962 32 H 0.158 0.842 33 H 0.111 0.889 34 H 0.078 0.922 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.248 -14.086 6.768 18.688 hybrid contribution -0.080 -0.076 0.091 0.143 sum 10.168 -14.162 6.859 18.734 Atomic orbital electron populations 1.69961 1.05982 1.26321 1.51982 1.24977 0.94754 0.99053 0.95919 0.86635 0.80015 0.83776 0.77828 1.20966 1.21517 1.19852 1.21105 0.93209 0.90073 1.48649 0.92180 1.19094 0.92663 0.90263 0.97436 1.21019 0.94963 0.91231 0.90669 0.90289 1.60689 1.02746 1.57394 1.07713 1.20570 0.91240 0.98553 0.89969 1.22413 0.92107 0.86238 0.97363 1.22192 1.05303 1.02632 0.93739 1.19948 1.00252 0.95953 0.96478 1.20250 0.97284 0.99708 0.92099 1.20722 0.98963 0.95927 1.00200 1.20871 1.00053 0.96024 0.95008 1.19977 0.98250 1.00684 0.93372 1.19682 0.98495 0.95769 0.85627 1.84047 1.50436 1.43476 1.30088 1.21144 0.97979 0.97071 0.93373 1.20976 0.98301 0.95771 0.98765 1.21061 0.99327 0.95798 0.97455 1.21028 1.00979 1.00166 0.93202 1.21093 0.98271 0.96247 0.98267 1.21091 0.99843 0.95175 0.97333 0.93270 0.96018 0.96195 0.84199 0.88915 0.92230 0.82773 0.85799 0.85649 0.85043 0.85102 0.86191 0.86560 0.86743 0.86579 0.86130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.51 16 2 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 4 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.49 -13.67 8.84 -34.44 -0.30 -13.97 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.04 1.06 4.63 -27.88 -0.13 0.94 16 10 C 0.13 2.50 2.17 -68.87 -0.15 2.35 16 11 H 0.08 1.50 7.66 -51.93 -0.40 1.10 16 12 N -0.65 -11.82 5.94 -109.22 -0.65 -12.47 16 13 C 0.13 1.90 5.98 -4.97 -0.03 1.87 16 14 C 0.07 1.05 6.74 -35.80 -0.24 0.81 16 15 C -0.22 -3.05 11.01 -37.62 -0.41 -3.47 16 16 C -0.13 -1.79 6.40 -105.16 -0.67 -2.46 16 17 C -0.08 -0.87 10.05 -39.69 -0.40 -1.27 16 18 C -0.14 -1.41 9.98 -39.94 -0.40 -1.81 16 19 C -0.10 -1.05 10.01 -39.54 -0.40 -1.44 16 20 C -0.10 -1.32 10.07 -39.46 -0.40 -1.72 16 21 C 0.05 0.80 7.42 -38.47 -0.29 0.52 16 22 O -0.18 -3.12 10.58 3.92 0.04 -3.08 16 23 C -0.09 -1.56 4.71 -104.63 -0.49 -2.06 16 24 C -0.12 -1.85 9.12 -39.58 -0.36 -2.21 16 25 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 26 C -0.14 -1.73 10.05 -39.59 -0.40 -2.13 16 27 C -0.12 -1.61 10.05 -39.58 -0.40 -2.00 16 28 C -0.12 -1.76 9.67 -39.58 -0.38 -2.14 16 29 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.34 5.77 6.33 -39.29 -0.25 5.52 16 33 H 0.09 1.42 8.05 -51.93 -0.42 1.00 16 34 H 0.06 0.79 8.00 -51.93 -0.42 0.37 16 35 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 37 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 39 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.12 1.81 6.50 -52.49 -0.34 1.47 16 41 H 0.12 1.30 8.06 -52.48 -0.42 0.87 16 42 H 0.11 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.70 8.04 -52.48 -0.42 1.28 16 LS Contribution 374.44 15.07 5.64 5.64 Total: -1.00 -32.23 374.44 -11.61 -43.83 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -6.01 Total: 6.17 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: -6.34 Total: -30.79 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.09 Total: -38.98 kcal Atomic # 8 Polarization: -3.12 SS G_CDS: 0.04 Total: -3.08 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.23 -11.61 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130464521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.408 kcal (2) G-P(sol) polarization free energy of solvation -32.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds