Wall clock time and date at job start Tue Mar 31 2020 12:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99475 * 2 1 4 4 H 1.48500 * 109.46992 * 239.99971 * 3 2 1 5 5 H 1.48502 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46975 * 120.00262 * 3 2 1 7 7 C 1.37877 * 120.00683 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00111 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47060 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34785 * 120.00340 * 179.97438 * 11 10 9 14 14 C 1.46539 * 124.97429 * 359.97311 * 13 11 10 15 15 C 1.53746 * 105.24786 * 179.97438 * 14 13 11 16 16 C 1.51415 * 104.46394 * 0.07595 * 15 14 13 17 17 C 1.38391 * 108.63481 * 359.92285 * 16 15 14 18 18 C 1.39691 * 119.11902 * 180.02562 * 17 16 15 19 19 C 1.37958 * 120.53827 * 359.97438 * 18 17 16 20 20 C 1.38034 * 120.36715 * 0.02562 * 19 18 17 21 21 C 1.39236 * 130.97818 * 179.97438 * 16 15 14 22 22 C 1.48397 * 120.04515 * 359.95786 * 21 16 15 23 23 C 1.39334 * 120.12312 * 309.72473 * 22 21 16 24 24 C 1.38027 * 119.87723 * 179.69851 * 23 22 21 25 25 C 1.38324 * 120.11906 * 0.60082 * 24 23 22 26 26 C 1.38318 * 120.24338 * 359.67657 * 25 24 23 27 27 C 1.38020 * 120.12297 * 0.02562 * 26 25 24 28 28 H 0.96998 * 120.00570 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47024 * 59.99686 * 9 7 2 30 30 H 1.09000 * 109.46572 * 300.00111 * 9 7 2 31 31 H 1.09003 * 109.47534 * 59.99905 * 10 9 7 32 32 H 1.09000 * 109.47442 * 299.99485 * 10 9 7 33 33 H 1.09002 * 110.30617 * 298.90279 * 14 13 11 34 34 H 1.08997 * 110.30474 * 60.96123 * 14 13 11 35 35 H 1.09010 * 110.41473 * 118.82477 * 15 14 13 36 36 H 1.08998 * 110.41901 * 241.27693 * 15 14 13 37 37 H 1.07992 * 119.73096 * 179.97438 * 18 17 16 38 38 H 1.07996 * 119.81891 * 180.02562 * 19 18 17 39 39 H 1.07991 * 120.16001 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.06216 * 359.97438 * 23 22 21 41 41 H 1.07994 * 119.93842 * 180.29940 * 24 23 22 42 42 H 1.08000 * 119.87422 * 179.69835 * 25 24 23 43 43 H 1.08002 * 119.93983 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.06610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 6 1.4921 -4.9671 0.0012 12 8 0.2793 -4.9672 0.0003 13 7 2.1661 -6.1343 0.0016 14 6 3.6260 -6.2614 0.0021 15 6 3.9002 -7.7742 0.0031 16 6 2.5250 -8.4078 0.0012 17 6 1.5746 -7.4019 0.0010 18 6 0.2207 -7.7458 -0.0001 19 6 -0.1661 -9.0701 -0.0016 20 6 0.7814 -10.0738 -0.0015 21 6 2.1357 -9.7446 0.0006 22 6 3.1612 -10.8172 0.0010 23 6 4.2018 -10.7901 -0.9252 24 6 5.1564 -11.7870 -0.9162 25 6 5.0745 -12.8183 0.0020 26 6 4.0404 -12.8532 0.9200 27 6 3.0838 -11.8583 0.9239 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6243 -2.5566 0.8903 31 1 2.8716 -3.6038 0.8923 32 1 2.8728 -3.6046 -0.8877 33 1 4.0459 -5.8021 -0.8928 34 1 4.0455 -5.7997 0.8959 35 1 4.4530 -8.0610 -0.8916 36 1 4.4508 -8.0602 0.8992 37 1 -0.5293 -6.9688 0.0002 38 1 -1.2161 -9.3228 -0.0029 39 1 0.4749 -11.1093 -0.0031 40 1 4.2638 -9.9882 -1.6459 41 1 5.9661 -11.7643 -1.6305 42 1 5.8208 -13.5988 0.0024 43 1 3.9813 -13.6605 1.6350 44 1 2.2769 -11.8862 1.6414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360646299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:25 Heat of formation + Delta-G solvation = 10.163408 kcal Electronic energy + Delta-G solvation = -25416.343639 eV Core-core repulsion = 21876.717505 eV Total energy + Delta-G solvation = -3539.626134 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10211 -39.46844 -38.21678 -36.29492 -33.59614 -33.11805 -31.63626 -31.15641 -30.72534 -29.40366 -28.41137 -25.91543 -23.80320 -23.57259 -22.61926 -22.25766 -21.17675 -20.80946 -18.89851 -17.39448 -16.79733 -16.39163 -16.25353 -15.92486 -15.68570 -15.19520 -15.11972 -14.51527 -14.45995 -14.38315 -13.90585 -13.67630 -13.36566 -13.00063 -12.73744 -12.71919 -12.46382 -12.38129 -12.23039 -11.89847 -11.76162 -11.70301 -11.29188 -11.21260 -10.95315 -10.88264 -10.66082 -10.19014 -10.02759 -9.74255 -9.39500 -9.29045 -9.20701 -9.13069 -8.39065 -8.36648 -7.69584 -6.00161 -4.05220 0.74234 1.13924 1.31174 1.57505 2.96559 3.00476 3.31988 3.36935 3.38466 3.51075 3.82001 4.24857 4.43088 4.45537 4.54122 4.65727 4.70607 4.84588 4.94912 4.96701 5.11607 5.22113 5.23866 5.27863 5.34784 5.38205 5.50293 5.53503 5.64184 5.71441 5.73948 5.78057 5.90880 6.08192 6.10284 6.17123 6.20532 6.23953 6.34512 6.45405 6.51668 6.55337 6.71669 6.78054 7.06979 7.56613 7.68058 7.77556 8.00523 8.29771 8.48144 9.02090 9.58583 11.10717 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.002419 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.366442 B =11572.871091 C =12439.203916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.124 4.124 11 C 0.519 3.481 12 O -0.508 6.508 13 N -0.565 5.565 14 C 0.102 3.898 15 C -0.083 4.083 16 C -0.132 4.132 17 C 0.161 3.839 18 C -0.132 4.132 19 C -0.091 4.091 20 C -0.137 4.137 21 C -0.015 4.015 22 C -0.037 4.037 23 C -0.106 4.106 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.120 4.120 27 C -0.107 4.107 28 H 0.262 0.738 29 H 0.025 0.975 30 H 0.024 0.976 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.334 -26.729 -0.007 28.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.164 4.164 11 C 0.312 3.688 12 O -0.381 6.381 13 N -0.289 5.289 14 C -0.020 4.020 15 C -0.120 4.120 16 C -0.135 4.135 17 C 0.064 3.936 18 C -0.153 4.153 19 C -0.110 4.110 20 C -0.156 4.156 21 C -0.016 4.016 22 C -0.037 4.037 23 C -0.124 4.124 24 C -0.137 4.137 25 C -0.141 4.141 26 C -0.138 4.138 27 C -0.125 4.125 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.107 0.893 37 H 0.160 0.840 38 H 0.146 0.854 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.499 -26.366 -0.007 28.025 hybrid contribution 0.495 0.932 0.006 1.055 sum 9.994 -25.435 0.000 27.328 Atomic orbital electron populations 1.69979 1.06071 1.26815 1.49863 1.25024 0.94844 0.99273 0.95191 0.86631 0.79539 0.83066 0.78574 1.20206 1.21249 1.20212 1.21138 0.92896 0.90861 1.51842 0.92577 1.18928 0.93129 0.89283 0.98750 1.21914 1.00808 0.90843 1.02793 1.21755 0.88388 0.84563 0.74139 1.90647 1.14212 1.86715 1.46490 1.46392 1.07489 1.04110 1.70914 1.22120 0.79654 0.96777 1.03497 1.21150 0.94514 0.92721 1.03590 1.19956 0.94835 0.91855 1.06856 1.18414 0.93275 0.84788 0.97077 1.21111 0.94061 0.97320 1.02816 1.20843 0.99540 0.91753 0.98862 1.20980 0.91312 0.99268 1.04052 1.17955 0.92509 0.90005 1.01089 1.18800 0.94662 0.94208 0.96027 1.21252 0.93919 0.98880 0.98350 1.21102 0.98897 0.94665 0.99074 1.21194 0.98473 0.98577 0.95871 1.21091 0.94935 0.98711 0.99065 1.21249 0.99135 0.93719 0.98405 0.92811 0.95702 0.95710 0.89809 0.89821 0.89704 0.89699 0.89366 0.89320 0.84045 0.85415 0.85799 0.85861 0.85963 0.86205 0.86013 0.85831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.22 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.83 9.11 -34.44 -0.31 -15.15 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.86 16 10 C -0.12 -2.50 4.78 -27.89 -0.13 -2.63 16 11 C 0.52 10.33 7.79 -10.98 -0.09 10.24 16 12 O -0.51 -11.91 14.14 5.55 0.08 -11.83 16 13 N -0.56 -9.09 3.13 -112.91 -0.35 -9.44 16 14 C 0.10 1.17 6.66 -3.63 -0.02 1.15 16 15 C -0.08 -0.83 6.05 -27.14 -0.16 -0.99 16 16 C -0.13 -1.68 5.98 -103.84 -0.62 -2.30 16 17 C 0.16 2.51 6.62 -83.59 -0.55 1.95 16 18 C -0.13 -2.07 9.45 -39.14 -0.37 -2.44 16 19 C -0.09 -1.13 10.01 -39.76 -0.40 -1.53 16 20 C -0.14 -1.54 9.52 -39.24 -0.37 -1.91 16 21 C -0.02 -0.18 5.47 -104.92 -0.57 -0.75 16 22 C -0.04 -0.37 5.36 -104.89 -0.56 -0.93 16 23 C -0.11 -0.95 8.82 -39.25 -0.35 -1.30 16 24 C -0.12 -0.91 10.03 -39.63 -0.40 -1.31 16 25 C -0.12 -0.90 10.04 -39.52 -0.40 -1.29 16 26 C -0.12 -0.91 10.03 -39.63 -0.40 -1.31 16 27 C -0.11 -0.95 9.51 -39.25 -0.37 -1.32 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 30 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 31 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 32 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.09 0.72 6.93 -51.92 -0.36 0.36 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.14 2.51 6.26 -52.49 -0.33 2.18 16 38 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 39 H 0.12 1.11 8.04 -52.49 -0.42 0.69 16 40 H 0.12 1.02 6.94 -52.49 -0.36 0.66 16 41 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 43 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.12 0.98 8.04 -52.48 -0.42 0.56 16 LS Contribution 367.80 15.07 5.54 5.54 Total: -1.00 -33.97 367.80 -11.40 -45.37 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -6.08 Total: -0.25 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -6.30 Total: -19.38 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.38 Total: -35.92 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.83 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.97 -11.40 -45.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360646299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.537 kcal (2) G-P(sol) polarization free energy of solvation -33.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds