Wall clock time and date at job start Tue Mar 31 2020 12:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99475 * 2 1 4 4 H 1.48500 * 109.46992 * 239.99971 * 3 2 1 5 5 H 1.48502 * 109.47290 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46975 * 120.00262 * 3 2 1 7 7 C 1.37877 * 120.00683 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00111 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99816 * 0.02562 * 7 2 1 10 10 C 1.52991 * 109.47060 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47060 * 180.02562 * 10 9 7 12 12 O 1.21288 * 120.00182 * 359.97438 * 11 10 9 13 13 N 1.34785 * 120.00340 * 179.97438 * 11 10 9 14 14 C 1.46539 * 124.97429 * 359.97311 * 13 11 10 15 15 C 1.53746 * 105.24786 * 179.97438 * 14 13 11 16 16 C 1.51415 * 104.46394 * 0.07595 * 15 14 13 17 17 C 1.38391 * 108.63481 * 359.92285 * 16 15 14 18 18 C 1.39691 * 119.11902 * 180.02562 * 17 16 15 19 19 C 1.37958 * 120.53827 * 359.97438 * 18 17 16 20 20 C 1.38034 * 120.36715 * 0.02562 * 19 18 17 21 21 C 1.39236 * 130.97818 * 179.97438 * 16 15 14 22 22 C 1.48397 * 120.04515 * 359.95786 * 21 16 15 23 23 C 1.39334 * 120.12312 * 309.72473 * 22 21 16 24 24 C 1.38027 * 119.87723 * 179.69851 * 23 22 21 25 25 C 1.38324 * 120.11906 * 0.60082 * 24 23 22 26 26 C 1.38318 * 120.24338 * 359.67657 * 25 24 23 27 27 C 1.38020 * 120.12297 * 0.02562 * 26 25 24 28 28 H 0.96998 * 120.00570 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47024 * 59.99686 * 9 7 2 30 30 H 1.09000 * 109.46572 * 300.00111 * 9 7 2 31 31 H 1.09003 * 109.47534 * 59.99905 * 10 9 7 32 32 H 1.09000 * 109.47442 * 299.99485 * 10 9 7 33 33 H 1.09002 * 110.30617 * 298.90279 * 14 13 11 34 34 H 1.08997 * 110.30474 * 60.96123 * 14 13 11 35 35 H 1.09010 * 110.41473 * 118.82477 * 15 14 13 36 36 H 1.08998 * 110.41901 * 241.27693 * 15 14 13 37 37 H 1.07992 * 119.73096 * 179.97438 * 18 17 16 38 38 H 1.07996 * 119.81891 * 180.02562 * 19 18 17 39 39 H 1.07991 * 120.16001 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.06216 * 359.97438 * 23 22 21 41 41 H 1.07994 * 119.93842 * 180.29940 * 24 23 22 42 42 H 1.08000 * 119.87422 * 179.69835 * 25 24 23 43 43 H 1.08002 * 119.93983 * 180.02562 * 26 25 24 44 44 H 1.08003 * 120.06610 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 6 1.4921 -4.9671 0.0012 12 8 0.2793 -4.9672 0.0003 13 7 2.1661 -6.1343 0.0016 14 6 3.6260 -6.2614 0.0021 15 6 3.9002 -7.7742 0.0031 16 6 2.5250 -8.4078 0.0012 17 6 1.5746 -7.4019 0.0010 18 6 0.2207 -7.7458 -0.0001 19 6 -0.1661 -9.0701 -0.0016 20 6 0.7814 -10.0738 -0.0015 21 6 2.1357 -9.7446 0.0006 22 6 3.1612 -10.8172 0.0010 23 6 4.2018 -10.7901 -0.9252 24 6 5.1564 -11.7870 -0.9162 25 6 5.0745 -12.8183 0.0020 26 6 4.0404 -12.8532 0.9200 27 6 3.0838 -11.8583 0.9239 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8897 30 1 0.6243 -2.5566 0.8903 31 1 2.8716 -3.6038 0.8923 32 1 2.8728 -3.6046 -0.8877 33 1 4.0459 -5.8021 -0.8928 34 1 4.0455 -5.7997 0.8959 35 1 4.4530 -8.0610 -0.8916 36 1 4.4508 -8.0602 0.8992 37 1 -0.5293 -6.9688 0.0002 38 1 -1.2161 -9.3228 -0.0029 39 1 0.4749 -11.1093 -0.0031 40 1 4.2638 -9.9882 -1.6459 41 1 5.9661 -11.7643 -1.6305 42 1 5.8208 -13.5988 0.0024 43 1 3.9813 -13.6605 1.6350 44 1 2.2769 -11.8862 1.6414 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360646299.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:33:24 Heat of formation + Delta-G solvation = -7.332037 kcal Electronic energy + Delta-G solvation = -25417.102298 eV Core-core repulsion = 21876.717505 eV Total energy + Delta-G solvation = -3540.384793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.22636 -40.39178 -39.32665 -37.39999 -35.65214 -34.03446 -33.27686 -32.13750 -31.64460 -30.46803 -29.27993 -27.81906 -25.04254 -24.54229 -23.53891 -23.28197 -22.16848 -22.09811 -20.17753 -18.87760 -18.08940 -17.48933 -17.39931 -17.26810 -16.67120 -16.47827 -16.01773 -15.98673 -15.77528 -15.42036 -15.02888 -14.41816 -14.36853 -14.22072 -14.19008 -13.79780 -13.74284 -13.37055 -13.31351 -13.24433 -12.90124 -12.79601 -12.67475 -12.54138 -12.46436 -11.99539 -11.89485 -11.74736 -11.68547 -11.36168 -11.22882 -10.84884 -10.58337 -10.18521 -9.78525 -9.21136 -8.82146 -8.20137 -6.34850 -0.07049 0.24141 0.56268 0.73726 1.41336 1.46120 1.53776 1.57648 1.74482 2.41493 2.70071 2.98852 3.12922 3.28288 3.55650 3.65905 3.81450 4.04851 4.11834 4.16928 4.18970 4.25102 4.32789 4.34839 4.44078 4.45544 4.50396 4.60609 4.63759 4.71232 4.78987 4.94119 4.96901 5.00773 5.10595 5.20496 5.28636 5.38060 5.41301 5.45924 5.50568 5.55360 5.62489 5.68078 5.74498 5.80204 6.00362 6.12646 6.14530 6.27221 6.82104 6.99556 7.35603 8.92452 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.026400 B = 0.002419 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.366442 B =11572.871091 C =12439.203916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.007 4.007 3 Si 0.976 3.024 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.043 3.957 10 C -0.109 4.109 11 C 0.516 3.484 12 O -0.563 6.563 13 N -0.561 5.561 14 C 0.090 3.910 15 C -0.074 4.074 16 C -0.126 4.126 17 C 0.121 3.879 18 C -0.163 4.163 19 C -0.092 4.092 20 C -0.129 4.129 21 C -0.012 4.012 22 C -0.056 4.056 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.115 4.115 28 H 0.263 0.737 29 H -0.018 1.018 30 H -0.018 1.018 31 H 0.109 0.891 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.101 0.899 35 H 0.113 0.887 36 H 0.106 0.894 37 H 0.106 0.894 38 H 0.147 0.853 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.479 -28.916 -0.058 32.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.097 0.903 9 C 0.005 3.995 10 C -0.148 4.148 11 C 0.308 3.692 12 O -0.441 6.441 13 N -0.284 5.284 14 C -0.031 4.031 15 C -0.111 4.111 16 C -0.129 4.129 17 C 0.026 3.974 18 C -0.184 4.184 19 C -0.110 4.110 20 C -0.147 4.147 21 C -0.013 4.013 22 C -0.056 4.056 23 C -0.131 4.131 24 C -0.140 4.140 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.133 4.133 28 H 0.072 0.928 29 H 0.001 0.999 30 H 0.000 1.000 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.131 0.869 36 H 0.125 0.875 37 H 0.124 0.876 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.161 0.839 42 H 0.161 0.839 43 H 0.160 0.840 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.706 -28.613 -0.057 31.726 hybrid contribution -0.784 1.379 0.024 1.586 sum 12.923 -27.234 -0.033 30.144 Atomic orbital electron populations 1.70172 1.08383 1.27957 1.51266 1.26166 0.95734 1.04064 0.94538 0.85344 0.78025 0.77137 0.79567 1.18546 1.21432 1.18581 1.21644 0.94074 0.91314 1.51094 0.90300 1.18696 0.93636 0.92391 0.94754 1.21645 0.99296 0.88705 1.05151 1.21590 0.87711 0.85779 0.74109 1.90631 1.16390 1.87617 1.49457 1.46259 1.09385 1.03242 1.69563 1.22562 0.76768 0.98465 1.05279 1.21241 0.93182 0.91079 1.05597 1.20267 0.95566 0.91639 1.05380 1.18691 0.93899 0.85206 0.99563 1.21076 0.93990 0.97973 1.05332 1.21046 1.01047 0.90667 0.98283 1.21327 0.91097 1.00133 1.02175 1.18252 0.93250 0.90218 0.99534 1.18749 0.94978 0.94344 0.97537 1.21364 0.93932 0.99559 0.98244 1.21384 0.99004 0.94202 0.99456 1.21557 0.98582 0.98809 0.95066 1.21377 0.94528 0.98798 0.99490 1.21387 0.99807 0.93786 0.98354 0.92818 0.99913 0.99954 0.87303 0.87243 0.87810 0.88055 0.86916 0.87547 0.87611 0.83540 0.83087 0.85523 0.83930 0.83902 0.84019 0.85408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.88 13.29 21.45 0.28 -59.60 16 2 C -0.01 -0.44 5.46 84.66 0.46 0.03 16 3 Si 0.98 44.19 29.54 68.60 2.03 46.22 16 4 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 7 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 8 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.41 4.26 29.85 0.13 2.54 16 10 C -0.11 -4.46 4.78 29.85 0.14 -4.31 16 11 C 0.52 21.65 7.79 87.66 0.68 22.33 16 12 O -0.56 -29.08 14.14 -3.05 -0.04 -29.13 16 13 N -0.56 -18.38 3.13 -629.51 -1.97 -20.35 16 14 C 0.09 1.88 6.66 86.62 0.58 2.46 16 15 C -0.07 -1.29 6.05 30.33 0.18 -1.11 16 16 C -0.13 -3.06 5.98 -19.36 -0.12 -3.18 16 17 C 0.12 3.91 6.62 38.25 0.25 4.17 16 18 C -0.16 -5.50 9.45 22.55 0.21 -5.29 16 19 C -0.09 -2.34 10.01 22.15 0.22 -2.12 16 20 C -0.13 -2.74 9.52 22.49 0.21 -2.53 16 21 C -0.01 -0.26 5.47 -20.06 -0.11 -0.37 16 22 C -0.06 -0.98 5.36 -20.04 -0.11 -1.09 16 23 C -0.11 -1.69 8.82 22.48 0.20 -1.49 16 24 C -0.12 -1.43 10.03 22.24 0.22 -1.21 16 25 C -0.12 -1.31 10.04 22.31 0.22 -1.08 16 26 C -0.12 -1.47 10.03 22.24 0.22 -1.24 16 27 C -0.12 -1.74 9.51 22.48 0.21 -1.53 16 28 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 29 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 30 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 31 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 32 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 1.43 6.93 -2.38 -0.02 1.42 16 36 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.11 4.28 6.26 -2.91 -0.02 4.27 16 38 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.15 2.36 8.04 -2.91 -0.02 2.34 16 40 H 0.13 1.73 6.94 -2.91 -0.02 1.71 16 41 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 42 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 43 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 44 H 0.13 1.72 8.04 -2.91 -0.02 1.70 16 Total: -1.00 -80.27 367.80 5.35 -74.92 By element: Atomic # 1 Polarization: 12.63 SS G_CDS: 1.00 Total: 13.63 kcal Atomic # 6 Polarization: -29.75 SS G_CDS: 4.06 Total: -25.69 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -1.69 Total: -79.95 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.04 Total: -29.13 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -80.27 5.35 -74.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360646299.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.588 kcal (2) G-P(sol) polarization free energy of solvation -80.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds