Wall clock time and date at job start Tue Mar 31 2020 13:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 119.99673 * 2 1 4 4 H 1.48505 * 109.47274 * 239.99785 * 3 2 1 5 5 H 1.48499 * 109.47499 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47370 * 119.99848 * 3 2 1 7 7 C 1.37876 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99960 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00185 * 0.02562 * 7 2 1 10 10 C 1.53044 * 109.46055 * 179.97438 * 9 7 2 11 11 C 1.53191 * 109.31440 * 178.62547 * 10 9 7 12 12 N 1.46926 * 108.89109 * 54.56430 * 11 10 9 13 13 C 1.34780 * 120.62730 * 126.46248 * 12 11 10 14 14 O 1.21276 * 120.00248 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99585 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46946 * 179.97438 * 15 13 12 17 17 O 1.42903 * 109.46983 * 179.97438 * 16 15 13 18 18 C 1.35954 * 116.99828 * 180.02562 * 17 16 15 19 19 C 1.38667 * 120.06279 * 0.02562 * 18 17 16 20 20 C 1.38183 * 119.96940 * 179.97438 * 19 18 17 21 21 C 1.38262 * 120.09476 * 0.02562 * 20 19 18 22 22 C 1.38253 * 120.12838 * 359.97438 * 21 20 19 23 23 C 1.38342 * 120.02913 * 359.71236 * 22 21 20 24 24 F 1.35101 * 120.04732 * 180.27410 * 23 22 21 25 25 C 1.46957 * 118.71783 * 306.64359 * 12 11 10 26 26 C 1.53040 * 109.44920 * 59.93522 * 9 7 2 27 27 H 0.96999 * 120.00746 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.46215 * 299.96931 * 9 7 2 29 29 H 1.09003 * 109.49852 * 58.67812 * 10 9 7 30 30 H 1.09001 * 109.52587 * 298.59773 * 10 9 7 31 31 H 1.09002 * 109.58786 * 174.42474 * 11 10 9 32 32 H 1.08996 * 109.58870 * 294.70753 * 11 10 9 33 33 H 1.09002 * 109.47438 * 299.99718 * 15 13 12 34 34 H 1.08999 * 109.47522 * 60.00065 * 15 13 12 35 35 H 1.08997 * 109.47578 * 300.00111 * 16 15 13 36 36 H 1.09002 * 109.46912 * 60.00365 * 16 15 13 37 37 H 1.07996 * 120.01630 * 359.94872 * 19 18 17 38 38 H 1.08000 * 119.95362 * 179.97438 * 20 19 18 39 39 H 1.08001 * 119.93487 * 179.97438 * 21 20 19 40 40 H 1.07999 * 119.99077 * 179.97438 * 22 21 20 41 41 H 1.09001 * 109.46843 * 293.57352 * 25 12 11 42 42 H 1.08997 * 109.71602 * 173.28846 * 25 12 11 43 43 H 1.08995 * 109.49643 * 301.32932 * 26 9 7 44 44 H 1.08996 * 109.49892 * 61.43126 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1027 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2459 -3.6622 0.0005 11 6 1.4769 -4.9866 0.0352 12 7 0.5206 -5.0108 -1.0799 13 6 0.5088 -6.0382 -1.9522 14 8 1.2922 -6.9546 -1.8205 15 6 -0.4779 -6.0481 -3.0912 16 6 -0.2808 -7.3153 -3.9257 17 8 -1.2168 -7.3251 -5.0054 18 6 -1.1754 -8.3908 -5.8486 19 6 -0.2536 -9.4056 -5.6406 20 6 -0.2136 -10.4882 -6.4985 21 6 -1.0910 -10.5608 -7.5646 22 6 -2.0116 -9.5512 -7.7757 23 6 -2.0606 -8.4682 -6.9163 24 9 -2.9638 -7.4841 -7.1190 25 6 -0.4199 -3.8913 -1.2280 26 6 0.3707 -2.5793 -1.2487 27 1 -0.4851 0.8400 -0.0004 28 1 0.6246 -2.5568 0.8906 29 1 2.8883 -3.5914 0.8783 30 1 2.8564 -3.6194 -0.9015 31 1 2.1755 -5.8175 -0.0644 32 1 0.9394 -5.0725 0.9795 33 1 -1.4925 -6.0290 -2.6933 34 1 -0.3172 -5.1716 -3.7189 35 1 0.7337 -7.3342 -4.3237 36 1 -0.4413 -8.1921 -3.2983 37 1 0.4329 -9.3498 -4.8088 38 1 0.5047 -11.2783 -6.3365 39 1 -1.0571 -11.4079 -8.2337 40 1 -2.6956 -9.6100 -8.6094 41 1 -1.1142 -3.8866 -0.3877 42 1 -0.9750 -3.9982 -2.1599 43 1 -0.3218 -1.7377 -1.2603 44 1 0.9986 -2.5467 -2.1390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541982932.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:47 Heat of formation + Delta-G solvation = -103.648293 kcal Electronic energy + Delta-G solvation = -26325.982854 eV Core-core repulsion = 22350.652250 eV Total energy + Delta-G solvation = -3975.330604 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.95309 -40.37726 -39.70670 -37.76156 -36.89276 -33.60639 -32.51710 -31.14225 -30.98639 -30.18003 -29.60865 -26.45784 -24.95216 -23.10908 -22.75198 -22.50250 -21.87087 -19.85534 -18.89313 -18.17167 -17.47828 -16.87723 -16.69751 -16.67341 -16.12501 -15.67017 -15.47839 -15.10082 -14.78480 -14.65764 -14.58701 -14.13730 -13.38136 -13.33519 -13.12617 -13.06959 -12.76151 -12.70384 -12.38867 -12.26625 -11.97828 -11.86359 -11.58554 -11.35968 -11.23012 -10.97684 -10.95709 -10.70623 -10.44612 -10.16164 -9.77270 -9.53313 -9.26240 -9.23265 -8.99523 -8.47752 -8.42524 -8.10991 -6.07231 -4.13570 0.81022 0.95512 2.62833 2.81335 3.27337 3.27346 3.32414 3.35208 3.51297 3.97764 4.37635 4.39788 4.49638 4.67329 4.81170 4.84714 4.86030 4.90642 5.16746 5.21834 5.26189 5.52334 5.59150 5.63728 5.70156 5.72863 5.74580 5.86692 5.87943 6.02038 6.06681 6.08127 6.22370 6.35679 6.37380 6.58743 6.80791 6.96291 7.04545 7.06634 7.20844 7.60936 7.79924 7.86169 7.98558 8.35189 8.38152 8.89546 9.51834 10.98336 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022217 B = 0.002314 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.974308 B =12098.150622 C =12865.805634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.124 4.124 11 C 0.112 3.888 12 N -0.595 5.595 13 C 0.518 3.482 14 O -0.563 6.563 15 C -0.140 4.140 16 C 0.076 3.924 17 O -0.309 6.309 18 C 0.105 3.895 19 C -0.182 4.182 20 C -0.089 4.089 21 C -0.134 4.134 22 C -0.118 4.118 23 C 0.065 3.935 24 F -0.132 7.132 25 C 0.099 3.901 26 C -0.125 4.125 27 H 0.261 0.739 28 H 0.028 0.972 29 H 0.061 0.939 30 H 0.052 0.948 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.142 0.858 38 H 0.132 0.868 39 H 0.133 0.867 40 H 0.141 0.859 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.106 0.894 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.279 -18.690 -11.838 22.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.073 0.927 9 C 0.030 3.970 10 C -0.162 4.162 11 C -0.010 4.010 12 N -0.327 5.327 13 C 0.306 3.694 14 O -0.443 6.443 15 C -0.180 4.180 16 C 0.001 3.999 17 O -0.222 6.222 18 C 0.058 3.942 19 C -0.201 4.201 20 C -0.107 4.107 21 C -0.152 4.152 22 C -0.137 4.137 23 C 0.045 3.955 24 F -0.111 7.111 25 C -0.022 4.022 26 C -0.163 4.163 27 H 0.071 0.929 28 H 0.046 0.954 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.159 0.841 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.124 0.876 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.189 -18.791 -11.739 22.549 hybrid contribution 0.399 1.190 0.061 1.257 sum -3.790 -17.601 -11.678 21.460 Atomic orbital electron populations 1.69812 1.05848 1.26669 1.50748 1.24958 0.94888 0.99085 0.95018 0.86666 0.79631 0.83127 0.78631 1.20328 1.21284 1.20295 1.21157 0.92921 0.90545 1.50528 0.92736 1.18637 0.92647 0.91760 0.93980 1.22014 0.98931 0.94148 1.01075 1.21722 0.91688 0.99826 0.87805 1.48230 1.35945 1.20730 1.27815 1.20089 0.84301 0.82128 0.82929 1.90651 1.42035 1.36486 1.75146 1.21489 1.01097 0.99118 0.96272 1.22539 0.92066 0.98839 0.86452 1.86066 1.57276 1.40137 1.38748 1.19024 0.95508 0.88690 0.90976 1.21324 1.00807 0.94952 1.03017 1.21054 0.98384 0.97369 0.93926 1.20930 0.96258 0.99060 0.98950 1.21025 1.00575 0.92884 0.99228 1.17036 0.92063 0.89391 0.96972 1.91512 1.64875 1.60122 1.94590 1.22129 0.91650 0.87456 1.01005 1.22038 1.00107 0.94545 0.99656 0.92857 0.95409 0.92031 0.92929 0.90287 0.92058 0.87768 0.87515 0.90786 0.90872 0.84043 0.84998 0.84910 0.84142 0.91668 0.91190 0.87600 0.94162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.09 11.31 55.43 0.63 -23.46 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.44 8.56 -34.44 -0.29 -13.73 16 8 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 9 C 0.05 1.12 2.07 -91.73 -0.19 0.93 16 10 C -0.12 -2.46 5.30 -26.61 -0.14 -2.60 16 11 C 0.11 1.96 6.43 -3.71 -0.02 1.94 16 12 N -0.60 -10.15 2.98 -172.74 -0.51 -10.67 16 13 C 0.52 8.36 7.70 -10.98 -0.08 8.27 16 14 O -0.56 -10.36 15.39 5.56 0.09 -10.28 16 15 C -0.14 -1.79 4.42 -27.88 -0.12 -1.91 16 16 C 0.08 0.93 4.03 37.16 0.15 1.08 16 17 O -0.31 -4.04 10.00 -19.60 -0.20 -4.23 16 18 C 0.10 1.25 6.69 -39.17 -0.26 0.98 16 19 C -0.18 -1.79 9.04 -39.44 -0.36 -2.15 16 20 C -0.09 -0.69 10.04 -39.59 -0.40 -1.09 16 21 C -0.13 -0.96 10.04 -39.57 -0.40 -1.36 16 22 C -0.12 -1.01 10.02 -39.54 -0.40 -1.41 16 23 C 0.07 0.75 7.31 -39.29 -0.29 0.46 16 24 F -0.13 -1.73 17.11 2.25 0.04 -1.69 16 25 C 0.10 1.69 6.33 -3.69 -0.02 1.66 16 26 C -0.13 -2.66 5.15 -26.61 -0.14 -2.80 16 27 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.08 1.38 7.01 -51.93 -0.36 1.01 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.10 1.19 7.95 -51.93 -0.41 0.77 16 34 H 0.11 1.32 7.69 -51.93 -0.40 0.92 16 35 H 0.07 0.90 7.62 -51.93 -0.40 0.50 16 36 H 0.07 0.85 7.62 -51.93 -0.40 0.46 16 37 H 0.14 1.29 6.30 -52.49 -0.33 0.96 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 43 H 0.11 2.53 6.03 -51.93 -0.31 2.21 16 44 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 361.33 15.07 5.45 5.45 Total: -1.00 -29.46 361.33 -8.86 -38.32 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.27 Total: 1.13 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -3.06 Total: -10.19 kcal Atomic # 7 Polarization: -34.24 SS G_CDS: 0.11 Total: -34.13 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.11 Total: -14.51 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.69 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.46 -8.86 -38.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541982932.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.327 kcal (2) G-P(sol) polarization free energy of solvation -29.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds