Wall clock time and date at job start Tue Mar 31 2020 12:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47006 * 269.99937 * 3 2 1 5 5 H 1.48503 * 109.47273 * 30.00273 * 3 2 1 6 6 H 1.48504 * 109.47179 * 150.00196 * 3 2 1 7 7 C 1.39940 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99740 * 167.46311 * 7 2 1 9 9 C 1.41429 * 120.00184 * 347.46511 * 7 2 1 10 10 C 1.40793 * 120.17679 * 154.88109 * 9 7 2 11 11 C 1.37718 * 120.03825 * 180.25543 * 10 9 7 12 12 C 1.38370 * 120.41057 * 359.49694 * 11 10 9 13 13 C 1.39881 * 120.35869 * 0.27355 * 12 11 10 14 14 C 1.47891 * 120.02202 * 179.97438 * 13 12 11 15 15 O 1.21550 * 119.99696 * 180.02562 * 14 13 12 16 16 N 1.34769 * 120.00145 * 0.02562 * 14 13 12 17 17 C 1.46498 * 120.00128 * 180.02562 * 16 14 13 18 18 H 1.09002 * 112.85122 * 27.27163 * 17 16 14 19 19 C 1.53786 * 113.61297 * 256.08146 * 17 16 14 20 20 C 1.53787 * 87.07716 * 270.88002 * 19 17 16 21 21 C 1.53778 * 113.61795 * 158.47054 * 17 16 14 22 22 H 1.08996 * 113.61670 * 203.66405 * 21 17 16 23 23 C 1.50694 * 113.61618 * 334.56824 * 21 17 16 24 24 C 1.38237 * 120.00194 * 249.06513 * 23 21 17 25 25 C 1.38236 * 119.99871 * 179.80547 * 24 23 21 26 26 C 1.38233 * 120.00100 * 0.42083 * 25 24 23 27 27 C 1.38232 * 120.00110 * 359.80972 * 26 25 24 28 28 C 1.38230 * 119.99793 * 0.02562 * 27 26 25 29 29 C 1.39033 * 119.94941 * 359.97438 * 13 12 11 30 30 H 0.96996 * 119.99995 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.98150 * 0.02562 * 10 9 7 32 32 H 1.07994 * 119.79357 * 179.77183 * 11 10 9 33 33 H 1.08002 * 119.81843 * 180.25469 * 12 11 10 34 34 H 0.97006 * 120.00444 * 359.97438 * 16 14 13 35 35 H 1.08996 * 113.61385 * 25.42988 * 19 17 16 36 36 H 1.09003 * 113.61283 * 156.33245 * 19 17 16 37 37 H 1.09001 * 113.61499 * 89.11837 * 20 19 17 38 38 H 1.09001 * 113.61018 * 219.93154 * 20 19 17 39 39 H 1.08000 * 119.99616 * 359.97438 * 24 23 21 40 40 H 1.08006 * 119.99449 * 180.20661 * 25 24 23 41 41 H 1.08004 * 119.99863 * 179.78575 * 26 25 24 42 42 H 1.08004 * 119.99981 * 179.97438 * 27 26 25 43 43 H 1.08005 * 119.99931 * 179.97438 * 28 27 26 44 44 H 1.08002 * 120.19603 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0687 -1.2230 -0.2036 9 6 1.3261 -2.4223 0.2647 10 6 1.8307 -3.6413 -0.2267 11 6 1.1616 -4.8176 0.0288 12 6 -0.0025 -4.8129 0.7768 13 6 -0.5164 -3.6121 1.2774 14 6 -1.7614 -3.6157 2.0756 15 8 -2.2078 -2.5719 2.5099 16 7 -2.4011 -4.7762 2.3212 17 6 -3.6347 -4.7796 3.1113 18 1 -4.1825 -3.8396 3.0450 19 6 -3.4416 -5.2795 4.5528 20 6 -3.7185 -6.6937 4.0158 21 6 -4.5116 -6.0214 2.8791 22 1 -5.5639 -5.8632 3.1151 23 6 -4.3028 -6.6645 1.5324 24 6 -5.3011 -6.6093 0.5777 25 6 -5.1079 -7.1958 -0.6590 26 6 -3.9199 -7.8451 -0.9381 27 6 -2.9235 -7.9045 0.0181 28 6 -3.1153 -7.3150 1.2537 29 6 0.1443 -2.4152 1.0241 30 1 -0.4850 0.8400 0.0004 31 1 2.7411 -3.6535 -0.8076 32 1 1.5503 -5.7499 -0.3532 33 1 -0.5173 -5.7414 0.9749 34 1 -2.0450 -5.6092 1.9742 35 1 -2.4273 -5.1461 4.9290 36 1 -4.2019 -4.9188 5.2456 37 1 -2.8236 -7.2145 3.6752 38 1 -4.3341 -7.3002 4.6803 39 1 -6.2308 -6.1055 0.7973 40 1 -5.8867 -7.1497 -1.4060 41 1 -3.7704 -8.3064 -1.9032 42 1 -1.9954 -8.4122 -0.1998 43 1 -2.3369 -7.3618 2.0010 44 1 -0.2492 -1.4857 1.4083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598304340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:22 Heat of formation + Delta-G solvation = 28.074351 kcal Electronic energy + Delta-G solvation = -26357.499235 eV Core-core repulsion = 22818.649779 eV Total energy + Delta-G solvation = -3538.849457 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.69022 -38.80704 -37.77569 -36.72709 -33.76998 -32.71969 -31.23480 -30.94842 -29.97840 -29.39126 -25.69432 -25.45166 -24.97814 -23.13270 -22.07325 -21.53837 -20.93526 -19.61355 -19.07123 -17.78357 -17.05563 -16.25173 -15.94131 -15.27836 -15.09699 -14.81532 -14.60764 -14.44285 -14.16016 -14.00688 -13.70023 -13.30943 -13.12775 -12.98406 -12.60462 -12.59438 -12.43961 -12.08685 -11.62536 -11.56780 -11.25460 -11.11925 -11.06434 -10.89600 -10.73225 -10.53678 -10.41394 -10.35551 -9.98707 -9.69985 -9.23899 -9.00970 -8.91724 -8.69393 -8.56794 -7.61527 -7.48302 -6.73625 -4.41509 1.31527 1.37623 2.22579 2.83246 3.08589 3.11871 3.16474 3.59850 3.79039 3.86646 3.93633 4.49440 4.58977 4.65731 4.66903 4.86449 4.95441 4.97961 5.06791 5.13038 5.39831 5.49051 5.56949 5.62801 5.63998 5.73934 5.92399 5.93990 5.95419 6.01710 6.03189 6.09930 6.20654 6.28596 6.43863 6.49879 6.59051 6.72850 6.94894 6.97649 7.01268 7.05665 7.24803 7.39957 7.71521 7.77973 7.95766 8.13475 8.21755 8.53190 8.82468 8.85482 8.99520 10.18670 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.003539 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.256992 B = 7908.865198 C = 8599.413183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.071 3.929 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.458 4.458 8 H 0.080 0.920 9 C 0.097 3.903 10 C -0.210 4.210 11 C -0.099 4.099 12 C -0.214 4.214 13 C -0.129 4.129 14 C 0.565 3.435 15 O -0.545 6.545 16 N -0.719 5.719 17 C 0.136 3.864 18 H 0.099 0.901 19 C -0.155 4.155 20 C -0.135 4.135 21 C -0.084 4.084 22 H 0.108 0.892 23 C -0.063 4.063 24 C -0.116 4.116 25 C -0.116 4.116 26 C -0.125 4.125 27 C -0.109 4.109 28 C -0.127 4.127 29 C -0.090 4.090 30 H 0.284 0.716 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.399 0.601 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.123 0.877 43 H 0.122 0.878 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.083 -13.626 3.255 16.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.148 4.148 3 Si 0.737 3.263 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.098 0.902 9 C 0.094 3.906 10 C -0.230 4.230 11 C -0.117 4.117 12 C -0.234 4.234 13 C -0.132 4.132 14 C 0.356 3.644 15 O -0.422 6.422 16 N -0.375 5.375 17 C 0.029 3.971 18 H 0.117 0.883 19 C -0.194 4.194 20 C -0.172 4.172 21 C -0.103 4.103 22 H 0.126 0.874 23 C -0.063 4.063 24 C -0.134 4.134 25 C -0.134 4.134 26 C -0.143 4.143 27 C -0.127 4.127 28 C -0.145 4.145 29 C -0.111 4.111 30 H 0.095 0.905 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.239 0.761 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.140 0.860 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.602 -12.692 3.551 16.306 hybrid contribution 0.446 0.264 -0.371 0.637 sum -9.156 -12.428 3.181 15.761 Atomic orbital electron populations 1.69764 1.07459 1.29577 1.34529 1.25970 0.94851 1.01525 0.92428 0.86241 0.80443 0.80463 0.79184 1.19459 1.19991 1.18453 1.19595 0.96453 0.90472 1.42222 0.90180 1.17614 0.91523 0.92469 0.88957 1.21115 1.02422 0.93059 1.06392 1.20412 0.95602 0.96671 0.99060 1.20333 0.99921 0.94861 1.08305 1.19491 0.95411 0.95472 1.02861 1.18873 0.84167 0.82558 0.78791 1.90686 1.67486 1.31779 1.52285 1.45894 1.25566 1.10544 1.55483 1.21694 0.86456 0.98126 0.90812 0.88262 1.23377 1.02926 0.95946 0.97183 1.23124 1.00156 0.96874 0.97040 1.22068 1.00264 0.96151 0.91781 0.87389 1.19624 0.94118 0.97152 0.95416 1.21008 0.98947 0.99896 0.93593 1.21134 0.97604 0.97948 0.96689 1.21133 0.93933 0.99994 0.99271 1.21147 0.98983 0.99156 0.93445 1.21033 0.97066 0.99036 0.97376 1.21782 0.95930 0.96294 0.97046 0.90505 0.88626 0.88953 0.89570 0.76110 0.90679 0.89274 0.89815 0.91012 0.86209 0.86221 0.86194 0.85876 0.86016 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.16 10.71 55.55 0.59 -20.56 16 2 C 0.07 1.80 5.24 -17.34 -0.09 1.71 16 3 Si 0.91 18.94 29.58 -169.99 -5.03 13.91 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.46 -12.14 9.07 -37.73 -0.34 -12.48 16 8 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 9 C 0.10 2.59 5.58 -106.87 -0.60 1.99 16 10 C -0.21 -5.02 9.78 -38.81 -0.38 -5.40 16 11 C -0.10 -2.13 10.01 -39.72 -0.40 -2.53 16 12 C -0.21 -4.60 9.55 -38.92 -0.37 -4.97 16 13 C -0.13 -3.12 5.87 -105.04 -0.62 -3.74 16 14 C 0.57 12.75 7.77 -12.31 -0.10 12.66 16 15 O -0.54 -13.93 15.98 5.32 0.09 -13.84 16 16 N -0.72 -12.49 4.77 -53.95 -0.26 -12.74 16 17 C 0.14 1.96 4.12 -67.12 -0.28 1.69 16 18 H 0.10 1.60 7.55 -51.93 -0.39 1.21 16 19 C -0.16 -1.84 7.88 -25.91 -0.20 -2.04 16 20 C -0.13 -1.35 7.34 -25.77 -0.19 -1.54 16 21 C -0.08 -0.93 3.97 -90.82 -0.36 -1.30 16 22 H 0.11 1.01 8.12 -51.93 -0.42 0.58 16 23 C -0.06 -0.77 4.98 -104.62 -0.52 -1.29 16 24 C -0.12 -1.36 9.73 -39.58 -0.39 -1.75 16 25 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16 26 C -0.13 -1.41 10.05 -39.59 -0.40 -1.80 16 27 C -0.11 -1.27 10.05 -39.59 -0.40 -1.67 16 28 C -0.13 -1.54 7.20 -39.58 -0.29 -1.83 16 29 C -0.09 -2.45 8.23 -38.44 -0.32 -2.77 16 30 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 31 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 33 H 0.09 1.57 6.38 -52.49 -0.33 1.23 16 34 H 0.40 6.28 3.05 -40.82 -0.12 6.16 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 0.85 5.92 -51.93 -0.31 0.54 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 41 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.12 1.37 5.07 -52.48 -0.27 1.10 16 44 H 0.14 4.09 5.60 -52.49 -0.29 3.80 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -30.55 359.46 -11.30 -41.86 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.49 Total: 14.71 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: -6.62 Total: -28.75 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: 0.34 Total: -33.31 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.55 -11.30 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598304340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.930 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds