Wall clock time and date at job start Tue Mar 31 2020 12:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 119.99994 * 2 1 4 4 H 1.48499 * 109.47006 * 269.99937 * 3 2 1 5 5 H 1.48503 * 109.47273 * 30.00273 * 3 2 1 6 6 H 1.48504 * 109.47179 * 150.00196 * 3 2 1 7 7 C 1.39940 * 119.99744 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99740 * 167.46311 * 7 2 1 9 9 C 1.41429 * 120.00184 * 347.46511 * 7 2 1 10 10 C 1.40793 * 120.17679 * 154.88109 * 9 7 2 11 11 C 1.37718 * 120.03825 * 180.25543 * 10 9 7 12 12 C 1.38370 * 120.41057 * 359.49694 * 11 10 9 13 13 C 1.39881 * 120.35869 * 0.27355 * 12 11 10 14 14 C 1.47891 * 120.02202 * 179.97438 * 13 12 11 15 15 O 1.21550 * 119.99696 * 180.02562 * 14 13 12 16 16 N 1.34769 * 120.00145 * 0.02562 * 14 13 12 17 17 C 1.46498 * 120.00128 * 180.02562 * 16 14 13 18 18 H 1.09002 * 112.85122 * 27.27163 * 17 16 14 19 19 C 1.53786 * 113.61297 * 256.08146 * 17 16 14 20 20 C 1.53787 * 87.07716 * 270.88002 * 19 17 16 21 21 C 1.53778 * 113.61795 * 158.47054 * 17 16 14 22 22 H 1.08996 * 113.61670 * 203.66405 * 21 17 16 23 23 C 1.50694 * 113.61618 * 334.56824 * 21 17 16 24 24 C 1.38237 * 120.00194 * 249.06513 * 23 21 17 25 25 C 1.38236 * 119.99871 * 179.80547 * 24 23 21 26 26 C 1.38233 * 120.00100 * 0.42083 * 25 24 23 27 27 C 1.38232 * 120.00110 * 359.80972 * 26 25 24 28 28 C 1.38230 * 119.99793 * 0.02562 * 27 26 25 29 29 C 1.39033 * 119.94941 * 359.97438 * 13 12 11 30 30 H 0.96996 * 119.99995 * 359.97438 * 1 2 3 31 31 H 1.07994 * 119.98150 * 0.02562 * 10 9 7 32 32 H 1.07994 * 119.79357 * 179.77183 * 11 10 9 33 33 H 1.08002 * 119.81843 * 180.25469 * 12 11 10 34 34 H 0.97006 * 120.00444 * 359.97438 * 16 14 13 35 35 H 1.08996 * 113.61385 * 25.42988 * 19 17 16 36 36 H 1.09003 * 113.61283 * 156.33245 * 19 17 16 37 37 H 1.09001 * 113.61499 * 89.11837 * 20 19 17 38 38 H 1.09001 * 113.61018 * 219.93154 * 20 19 17 39 39 H 1.08000 * 119.99616 * 359.97438 * 24 23 21 40 40 H 1.08006 * 119.99449 * 180.20661 * 25 24 23 41 41 H 1.08004 * 119.99863 * 179.78575 * 26 25 24 42 42 H 1.08004 * 119.99981 * 179.97438 * 27 26 25 43 43 H 1.08005 * 119.99931 * 179.97438 * 28 27 26 44 44 H 1.08002 * 120.19603 * 179.97438 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.4898 2.0463 -1.4001 5 1 1.4398 2.6527 0.7001 6 1 3.5399 1.4401 0.7000 7 6 2.0079 -1.2119 -0.0005 8 1 3.0687 -1.2230 -0.2036 9 6 1.3261 -2.4223 0.2647 10 6 1.8307 -3.6413 -0.2267 11 6 1.1616 -4.8176 0.0288 12 6 -0.0025 -4.8129 0.7768 13 6 -0.5164 -3.6121 1.2774 14 6 -1.7614 -3.6157 2.0756 15 8 -2.2078 -2.5719 2.5099 16 7 -2.4011 -4.7762 2.3212 17 6 -3.6347 -4.7796 3.1113 18 1 -4.1825 -3.8396 3.0450 19 6 -3.4416 -5.2795 4.5528 20 6 -3.7185 -6.6937 4.0158 21 6 -4.5116 -6.0214 2.8791 22 1 -5.5639 -5.8632 3.1151 23 6 -4.3028 -6.6645 1.5324 24 6 -5.3011 -6.6093 0.5777 25 6 -5.1079 -7.1958 -0.6590 26 6 -3.9199 -7.8451 -0.9381 27 6 -2.9235 -7.9045 0.0181 28 6 -3.1153 -7.3150 1.2537 29 6 0.1443 -2.4152 1.0241 30 1 -0.4850 0.8400 0.0004 31 1 2.7411 -3.6535 -0.8076 32 1 1.5503 -5.7499 -0.3532 33 1 -0.5173 -5.7414 0.9749 34 1 -2.0450 -5.6092 1.9742 35 1 -2.4273 -5.1461 4.9290 36 1 -4.2019 -4.9188 5.2456 37 1 -2.8236 -7.2145 3.6752 38 1 -4.3341 -7.3002 4.6803 39 1 -6.2308 -6.1055 0.7973 40 1 -5.8867 -7.1497 -1.4060 41 1 -3.7704 -8.3064 -1.9032 42 1 -1.9954 -8.4122 -0.1998 43 1 -2.3369 -7.3618 2.0010 44 1 -0.2492 -1.4857 1.4083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598304340.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:22 Heat of formation + Delta-G solvation = 13.026108 kcal Electronic energy + Delta-G solvation = -26358.151776 eV Core-core repulsion = 22818.649779 eV Total energy + Delta-G solvation = -3539.501998 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.83214 -40.28145 -39.03441 -38.36577 -35.64906 -34.28898 -32.15086 -31.80955 -31.75817 -31.25830 -27.33669 -26.53690 -26.23012 -24.47854 -23.24745 -22.79817 -22.45969 -21.25937 -20.22877 -19.54033 -18.00099 -17.95202 -17.18329 -16.81109 -16.47512 -16.25663 -15.98470 -15.81764 -15.35151 -15.17522 -15.03904 -14.88660 -14.45312 -14.32088 -14.22383 -13.86415 -13.49499 -13.44751 -13.06697 -12.92578 -12.77432 -12.56376 -12.41937 -12.21728 -12.11373 -11.91241 -11.73717 -11.56071 -11.44718 -11.30311 -11.10973 -10.79267 -10.08619 -9.78876 -9.55488 -9.47361 -9.38244 -8.62356 -6.40943 0.35725 0.43999 0.51280 1.00298 1.36224 1.46298 1.52227 2.07535 2.19073 2.21362 2.79255 2.86126 3.58247 3.61791 3.69506 3.76608 3.91489 4.01959 4.05882 4.14994 4.27160 4.29023 4.39198 4.55211 4.58212 4.63681 4.68540 4.80466 4.89657 4.95510 5.02056 5.07209 5.07482 5.14218 5.17518 5.18669 5.21715 5.32254 5.50572 5.57586 5.61831 5.65840 5.73750 5.85164 5.90977 6.06432 6.14203 6.27106 6.50138 6.67081 6.87282 6.94120 7.30021 8.31844 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015724 B = 0.003539 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1780.256992 B = 7908.865198 C = 8599.413183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.026 3.974 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.495 4.495 8 H 0.085 0.915 9 C 0.066 3.934 10 C -0.214 4.214 11 C -0.095 4.095 12 C -0.196 4.196 13 C -0.141 4.141 14 C 0.559 3.441 15 O -0.588 6.588 16 N -0.696 5.696 17 C 0.110 3.890 18 H 0.075 0.925 19 C -0.150 4.150 20 C -0.121 4.121 21 C -0.069 4.069 22 H 0.130 0.870 23 C -0.080 4.080 24 C -0.130 4.130 25 C -0.126 4.126 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.141 4.141 29 C -0.130 4.130 30 H 0.285 0.715 31 H 0.111 0.889 32 H 0.140 0.860 33 H 0.126 0.874 34 H 0.408 0.592 35 H 0.059 0.941 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.129 0.871 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.200 -16.387 3.103 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.188 4.188 3 Si 0.807 3.193 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.177 1.177 7 C -0.524 4.524 8 H 0.103 0.897 9 C 0.064 3.936 10 C -0.234 4.234 11 C -0.113 4.113 12 C -0.216 4.216 13 C -0.145 4.145 14 C 0.349 3.651 15 O -0.469 6.469 16 N -0.351 5.351 17 C 0.004 3.996 18 H 0.093 0.907 19 C -0.188 4.188 20 C -0.158 4.158 21 C -0.087 4.087 22 H 0.148 0.852 23 C -0.080 4.080 24 C -0.148 4.148 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.139 4.139 28 C -0.159 4.159 29 C -0.150 4.150 30 H 0.096 0.904 31 H 0.129 0.871 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.250 0.750 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.150 0.850 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.158 0.842 43 H 0.147 0.853 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.729 -15.528 3.401 18.637 hybrid contribution 0.395 0.904 -0.344 1.045 sum -9.334 -14.623 3.057 17.616 Atomic orbital electron populations 1.69890 1.09222 1.30402 1.36195 1.26896 0.95485 1.05057 0.91380 0.85140 0.78972 0.75574 0.79661 1.18207 1.19790 1.17704 1.19902 0.96874 0.91537 1.44106 0.89673 1.17965 0.91968 0.93996 0.89687 1.21435 1.02991 0.93016 1.05939 1.20898 0.94862 0.97664 0.97831 1.20768 0.99572 0.95147 1.06093 1.19804 0.95979 0.95704 1.02980 1.18802 0.84136 0.83408 0.78721 1.90656 1.68522 1.33613 1.54130 1.45692 1.25772 1.09097 1.54516 1.22067 0.85766 0.98977 0.92774 0.90690 1.23381 1.02770 0.97199 0.95495 1.23088 1.00366 0.95890 0.96486 1.22064 1.00902 0.93709 0.92073 0.85233 1.19812 0.94566 0.97720 0.95922 1.21299 0.99570 1.00070 0.93867 1.21461 0.98286 0.97587 0.97015 1.21469 0.93845 0.99804 1.00123 1.21453 0.99884 0.99168 0.93357 1.21223 0.97325 0.99445 0.97941 1.21584 0.97645 0.96311 0.99488 0.90429 0.87085 0.84230 0.85636 0.74982 0.92208 0.87274 0.89704 0.88333 0.84955 0.84416 0.84351 0.84181 0.85306 0.87706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.36 10.71 21.83 0.23 -47.13 16 2 C 0.03 1.36 5.24 85.25 0.45 1.81 16 3 Si 0.99 40.11 29.58 68.60 2.03 42.14 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 6 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 7 C -0.49 -27.26 9.07 23.47 0.21 -27.05 16 8 H 0.09 4.39 7.88 -2.91 -0.02 4.37 16 9 C 0.07 3.65 5.58 -21.32 -0.12 3.53 16 10 C -0.21 -10.10 9.78 22.77 0.22 -9.87 16 11 C -0.09 -3.81 10.01 22.18 0.22 -3.59 16 12 C -0.20 -8.02 9.55 22.70 0.22 -7.80 16 13 C -0.14 -6.97 5.87 -20.13 -0.12 -7.09 16 14 C 0.56 25.97 7.77 86.80 0.67 26.65 16 15 O -0.59 -31.86 15.98 -3.87 -0.06 -31.93 16 16 N -0.70 -23.83 4.77 -442.87 -2.11 -25.95 16 17 C 0.11 3.11 4.12 45.52 0.19 3.30 16 18 H 0.07 2.49 7.55 -2.39 -0.02 2.48 16 19 C -0.15 -3.31 7.88 31.12 0.25 -3.06 16 20 C -0.12 -2.07 7.34 31.22 0.23 -1.84 16 21 C -0.07 -1.38 3.97 -10.92 -0.04 -1.42 16 22 H 0.13 2.04 8.12 -2.39 -0.02 2.02 16 23 C -0.08 -1.78 4.98 -19.87 -0.10 -1.88 16 24 C -0.13 -2.79 9.73 22.27 0.22 -2.57 16 25 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 26 C -0.13 -2.68 10.05 22.27 0.22 -2.45 16 27 C -0.12 -2.47 10.05 22.27 0.22 -2.24 16 28 C -0.14 -3.06 7.20 22.27 0.16 -2.90 16 29 C -0.13 -7.41 8.23 23.01 0.19 -7.22 16 30 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 31 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 32 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 33 H 0.13 4.08 6.38 -2.91 -0.02 4.06 16 34 H 0.41 12.11 3.05 -92.70 -0.28 11.83 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.08 1.45 5.92 -2.39 -0.01 1.43 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.13 2.37 8.06 -2.91 -0.02 2.35 16 40 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 41 H 0.14 2.14 8.06 -2.91 -0.02 2.11 16 42 H 0.14 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.13 2.50 5.07 -2.91 -0.01 2.48 16 44 H 0.11 6.67 5.60 -2.91 -0.02 6.65 16 Total: -1.00 -71.61 359.46 4.35 -67.26 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: 0.75 Total: 43.61 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 3.52 Total: -48.01 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -1.88 Total: -73.07 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.06 Total: -31.93 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Total: -71.61 4.35 -67.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598304340.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.281 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds