Wall clock time and date at job start Tue Mar 31 2020 12:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47109 * 269.99565 * 3 2 1 5 5 H 1.48501 * 109.47100 * 29.99679 * 3 2 1 6 6 H 1.48501 * 109.46880 * 149.99633 * 3 2 1 7 7 C 1.39943 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00071 * 164.87097 * 7 2 1 9 9 C 1.41403 * 119.99665 * 344.87742 * 7 2 1 10 10 C 1.40731 * 120.24608 * 335.00701 * 9 7 2 11 11 C 1.37596 * 119.74435 * 180.32677 * 10 9 7 12 12 C 1.38653 * 120.24813 * 359.65718 * 11 10 9 13 13 C 1.38614 * 120.50162 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.24686 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.12651 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47312 * 265.00192 * 15 14 13 17 17 O 1.21294 * 119.99646 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00433 * 179.97438 * 16 15 14 19 19 C 1.39925 * 120.00131 * 184.56727 * 18 16 15 20 20 C 1.38888 * 120.10622 * 324.49396 * 19 18 16 21 21 C 1.37968 * 119.86620 * 179.72848 * 20 19 18 22 22 C 1.38569 * 120.30631 * 0.02562 * 21 20 19 23 23 C 1.38282 * 119.96161 * 359.97438 * 22 21 20 24 24 C 1.38380 * 119.91965 * 359.97438 * 23 22 21 25 25 C 1.51384 * 109.75237 * 180.02562 * 23 22 21 26 26 C 1.54334 * 105.17278 * 342.79867 * 25 23 22 27 27 C 1.51394 * 130.30757 * 180.02562 * 22 21 20 28 28 H 0.96991 * 119.99875 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.12681 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.87281 * 179.68367 * 11 10 9 31 31 H 1.08000 * 119.74730 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.87363 * 180.02562 * 13 12 11 33 33 H 1.08999 * 109.47330 * 144.99889 * 15 14 13 34 34 H 1.09007 * 109.47299 * 24.99671 * 15 14 13 35 35 H 0.97005 * 119.99681 * 4.56626 * 18 16 15 36 36 H 1.08005 * 120.06704 * 359.74996 * 20 19 18 37 37 H 1.07998 * 119.84767 * 180.02562 * 21 20 19 38 38 H 1.08001 * 119.92029 * 179.97438 * 24 23 22 39 39 H 1.09001 * 110.30519 * 223.87278 * 25 23 22 40 40 H 1.09003 * 110.38202 * 101.76627 * 25 23 22 41 41 H 1.08995 * 110.82846 * 268.14596 * 26 25 23 42 42 H 1.09007 * 110.99104 * 144.67869 * 26 25 23 43 43 H 1.09004 * 110.29561 * 316.10652 * 27 22 21 44 44 H 1.09004 * 110.30533 * 78.25354 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0600 -1.2282 -0.2436 9 6 1.3378 -2.4151 0.3206 10 6 0.1801 -2.3906 1.1203 11 6 -0.4601 -3.5682 1.4310 12 6 0.0272 -4.7752 0.9534 13 6 1.1629 -4.8107 0.1594 14 6 1.8201 -3.6452 -0.1631 15 6 3.0549 -3.6869 -1.0260 16 6 4.2801 -3.7109 -0.1489 17 8 4.1622 -3.6950 1.0582 18 7 5.5069 -3.7498 -0.7057 19 6 6.6403 -3.8685 0.1063 20 6 6.6757 -3.2476 1.3481 21 6 7.7936 -3.3725 2.1470 22 6 8.8817 -4.1143 1.7161 23 6 8.8494 -4.7337 0.4801 24 6 7.7298 -4.6119 -0.3239 25 6 10.1478 -5.4759 0.2457 26 6 11.1405 -4.8868 1.2701 27 6 10.2042 -4.3988 2.3959 28 1 -0.4849 0.8400 -0.0004 29 1 -0.2016 -1.4514 1.4928 30 1 -1.3459 -3.5523 2.0488 31 1 -0.4819 -5.6947 1.2018 32 1 1.5335 -5.7565 -0.2075 33 1 3.0821 -2.8038 -1.6643 34 1 3.0346 -4.5831 -1.6462 35 1 5.6041 -3.6957 -1.6693 36 1 5.8298 -2.6684 1.6879 37 1 7.8207 -2.8899 3.1128 38 1 7.7047 -5.0953 -1.2894 39 1 10.5046 -5.3025 -0.7695 40 1 10.0121 -6.5431 0.4211 41 1 11.6943 -4.0533 0.8381 42 1 11.8224 -5.6533 1.6385 43 1 10.5995 -3.4898 2.8494 44 1 10.0822 -5.1764 3.1500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776742685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:08 Heat of formation + Delta-G solvation = -1.528005 kcal Electronic energy + Delta-G solvation = -25809.154108 eV Core-core repulsion = 22269.020997 eV Total energy + Delta-G solvation = -3540.133111 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.44557 -39.16919 -37.46588 -35.83780 -33.63238 -33.57924 -31.74315 -31.08992 -29.45409 -28.46238 -27.41719 -26.38097 -24.97375 -22.66380 -21.81460 -20.92349 -20.87342 -19.91912 -19.31196 -17.30713 -16.98791 -16.46571 -15.80420 -15.66776 -15.43043 -15.03399 -14.49842 -14.37466 -13.83276 -13.52745 -13.42477 -13.22749 -13.02389 -13.00646 -12.64393 -12.55646 -12.03303 -11.72719 -11.60043 -11.55519 -11.32885 -11.30090 -11.10291 -10.98178 -10.97549 -10.79465 -10.71540 -10.39581 -9.79883 -9.50294 -9.38497 -9.21200 -9.15831 -8.62078 -7.76948 -7.31267 -7.30405 -6.72960 -4.35642 1.41569 1.51431 2.77539 2.95390 3.06652 3.11836 3.17511 3.27058 3.50836 3.90763 3.93264 4.39617 4.48386 4.66281 4.81905 5.06108 5.08812 5.20823 5.34430 5.49818 5.55639 5.58313 5.62874 5.66215 5.75908 5.85289 5.91943 5.95968 6.01656 6.07043 6.19536 6.28163 6.39760 6.46842 6.51275 6.57211 6.71876 6.76056 6.79704 7.07667 7.25681 7.30560 7.42821 7.62714 7.76467 7.92878 8.06542 8.13762 8.30910 8.64076 8.70204 8.91015 9.01180 10.19923 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.003351 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.018454 B = 8352.721385 C = 9466.459566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.076 3.924 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.455 4.455 8 H 0.073 0.927 9 C 0.128 3.872 10 C -0.160 4.160 11 C -0.107 4.107 12 C -0.239 4.239 13 C -0.080 4.080 14 C -0.185 4.185 15 C -0.068 4.068 16 C 0.513 3.487 17 O -0.499 6.499 18 N -0.688 5.688 19 C 0.159 3.841 20 C -0.119 4.119 21 C -0.089 4.089 22 C -0.124 4.124 23 C -0.086 4.086 24 C -0.140 4.140 25 C -0.079 4.079 26 C -0.120 4.120 27 C -0.078 4.078 28 H 0.280 0.720 29 H 0.120 0.880 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.407 0.593 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.984 -5.898 -2.087 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.485 4.485 8 H 0.091 0.909 9 C 0.126 3.874 10 C -0.179 4.179 11 C -0.125 4.125 12 C -0.259 4.259 13 C -0.098 4.098 14 C -0.187 4.187 15 C -0.108 4.108 16 C 0.302 3.698 17 O -0.371 6.371 18 N -0.334 5.334 19 C 0.064 3.936 20 C -0.139 4.139 21 C -0.107 4.107 22 C -0.125 4.125 23 C -0.086 4.086 24 C -0.161 4.161 25 C -0.116 4.116 26 C -0.158 4.158 27 C -0.115 4.115 28 H 0.091 0.909 29 H 0.138 0.862 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.242 0.758 36 H 0.162 0.838 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.584 -5.722 -1.233 17.587 hybrid contribution 0.230 0.788 -0.506 0.964 sum 16.815 -4.934 -1.738 17.609 Atomic orbital electron populations 1.69810 1.07457 1.29046 1.35755 1.25881 0.94717 1.01159 0.92337 0.86403 0.80791 0.80956 0.79172 1.19507 1.20044 1.18523 1.19466 0.96723 0.90869 1.41453 0.90876 1.17338 0.90964 0.91220 0.87881 1.21367 0.98614 0.96779 1.01117 1.20695 0.98575 0.93466 0.99773 1.20312 1.00964 0.96207 1.08400 1.20300 0.95761 0.95489 0.98285 1.19005 0.98723 0.94104 1.06834 1.20273 0.90212 1.03105 0.97214 1.21538 0.83707 0.74482 0.90070 1.90683 1.85910 1.45386 1.15074 1.43837 1.04801 1.74720 1.10032 1.17651 0.87109 0.96109 0.92711 1.21320 0.98651 0.99843 0.94096 1.20524 0.92054 0.98587 0.99584 1.20499 0.96116 0.99930 0.95924 1.20240 0.95119 0.98506 0.94774 1.20266 0.93530 1.01261 1.01057 1.20999 0.91548 0.99212 0.99805 1.22280 0.97065 1.00594 0.95817 1.20984 0.91679 1.01217 0.97644 0.90947 0.86192 0.89562 0.89655 0.89764 0.88258 0.90246 0.75823 0.83811 0.86179 0.86227 0.90954 0.90417 0.91092 0.90784 0.91032 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.42 10.83 55.55 0.60 -19.81 16 2 C 0.08 1.91 5.20 -17.34 -0.09 1.82 16 3 Si 0.90 18.80 29.59 -169.99 -5.03 13.77 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 7 C -0.46 -11.85 8.17 -37.74 -0.31 -12.16 16 8 H 0.07 1.84 6.63 -52.49 -0.35 1.49 16 9 C 0.13 3.40 5.58 -106.82 -0.60 2.81 16 10 C -0.16 -4.26 8.69 -38.87 -0.34 -4.59 16 11 C -0.11 -2.61 10.02 -39.66 -0.40 -3.00 16 12 C -0.24 -5.59 10.05 -39.29 -0.39 -5.99 16 13 C -0.08 -1.85 9.66 -39.66 -0.38 -2.23 16 14 C -0.18 -4.40 4.43 -103.92 -0.46 -4.86 16 15 C -0.07 -1.31 5.18 -29.04 -0.15 -1.46 16 16 C 0.51 9.92 7.29 -10.98 -0.08 9.84 16 17 O -0.50 -11.72 13.51 5.55 0.07 -11.65 16 18 N -0.69 -10.49 5.34 -9.89 -0.05 -10.54 16 19 C 0.16 2.49 6.29 -83.74 -0.53 1.96 16 20 C -0.12 -2.02 8.69 -39.44 -0.34 -2.36 16 21 C -0.09 -1.29 10.03 -39.56 -0.40 -1.69 16 22 C -0.12 -1.58 6.14 -104.14 -0.64 -2.22 16 23 C -0.09 -1.06 6.13 -104.22 -0.64 -1.70 16 24 C -0.14 -1.85 9.96 -39.35 -0.39 -2.24 16 25 C -0.08 -0.71 6.77 -26.85 -0.18 -0.89 16 26 C -0.12 -0.94 7.08 -25.33 -0.18 -1.12 16 27 C -0.08 -0.74 6.77 -26.84 -0.18 -0.92 16 28 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 29 H 0.12 3.29 6.09 -52.48 -0.32 2.97 16 30 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 31 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.08 1.71 8.06 -52.49 -0.42 1.29 16 33 H 0.10 1.84 7.06 -51.93 -0.37 1.47 16 34 H 0.08 1.26 8.05 -51.93 -0.42 0.84 16 35 H 0.41 4.67 8.83 -40.82 -0.36 4.31 16 36 H 0.14 2.82 6.28 -52.48 -0.33 2.49 16 37 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 38 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 363.08 15.07 5.47 5.47 Total: -1.00 -30.84 363.08 -11.54 -42.38 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: -5.93 Total: 11.39 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -6.68 Total: -31.01 kcal Atomic # 7 Polarization: -30.90 SS G_CDS: 0.55 Total: -30.35 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.07 Total: -11.65 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.84 -11.54 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776742685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.848 kcal (2) G-P(sol) polarization free energy of solvation -30.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds