Wall clock time and date at job start Tue Mar 31 2020 12:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30831 * 1 3 3 Si 1.86801 * 119.99702 * 2 1 4 4 H 1.48497 * 109.47109 * 269.99565 * 3 2 1 5 5 H 1.48501 * 109.47100 * 29.99679 * 3 2 1 6 6 H 1.48501 * 109.46880 * 149.99633 * 3 2 1 7 7 C 1.39943 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00071 * 164.87097 * 7 2 1 9 9 C 1.41403 * 119.99665 * 344.87742 * 7 2 1 10 10 C 1.40731 * 120.24608 * 335.00701 * 9 7 2 11 11 C 1.37596 * 119.74435 * 180.32677 * 10 9 7 12 12 C 1.38653 * 120.24813 * 359.65718 * 11 10 9 13 13 C 1.38614 * 120.50162 * 0.02562 * 12 11 10 14 14 C 1.37636 * 120.24686 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.12651 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47312 * 265.00192 * 15 14 13 17 17 O 1.21294 * 119.99646 * 359.97438 * 16 15 14 18 18 N 1.34779 * 120.00433 * 179.97438 * 16 15 14 19 19 C 1.39925 * 120.00131 * 184.56727 * 18 16 15 20 20 C 1.38888 * 120.10622 * 324.49396 * 19 18 16 21 21 C 1.37968 * 119.86620 * 179.72848 * 20 19 18 22 22 C 1.38569 * 120.30631 * 0.02562 * 21 20 19 23 23 C 1.38282 * 119.96161 * 359.97438 * 22 21 20 24 24 C 1.38380 * 119.91965 * 359.97438 * 23 22 21 25 25 C 1.51384 * 109.75237 * 180.02562 * 23 22 21 26 26 C 1.54334 * 105.17278 * 342.79867 * 25 23 22 27 27 C 1.51394 * 130.30757 * 180.02562 * 22 21 20 28 28 H 0.96991 * 119.99875 * 0.02562 * 1 2 3 29 29 H 1.08008 * 120.12681 * 0.02562 * 10 9 7 30 30 H 1.08007 * 119.87281 * 179.68367 * 11 10 9 31 31 H 1.08000 * 119.74730 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.87363 * 180.02562 * 13 12 11 33 33 H 1.08999 * 109.47330 * 144.99889 * 15 14 13 34 34 H 1.09007 * 109.47299 * 24.99671 * 15 14 13 35 35 H 0.97005 * 119.99681 * 4.56626 * 18 16 15 36 36 H 1.08005 * 120.06704 * 359.74996 * 20 19 18 37 37 H 1.07998 * 119.84767 * 180.02562 * 21 20 19 38 38 H 1.08001 * 119.92029 * 179.97438 * 24 23 22 39 39 H 1.09001 * 110.30519 * 223.87278 * 25 23 22 40 40 H 1.09003 * 110.38202 * 101.76627 * 25 23 22 41 41 H 1.08995 * 110.82846 * 268.14596 * 26 25 23 42 42 H 1.09007 * 110.99104 * 144.67869 * 26 25 23 43 43 H 1.09004 * 110.29561 * 316.10652 * 27 22 21 44 44 H 1.09004 * 110.30533 * 78.25354 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4396 2.6527 0.7000 6 1 3.5397 1.4403 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0600 -1.2282 -0.2436 9 6 1.3378 -2.4151 0.3206 10 6 0.1801 -2.3906 1.1203 11 6 -0.4601 -3.5682 1.4310 12 6 0.0272 -4.7752 0.9534 13 6 1.1629 -4.8107 0.1594 14 6 1.8201 -3.6452 -0.1631 15 6 3.0549 -3.6869 -1.0260 16 6 4.2801 -3.7109 -0.1489 17 8 4.1622 -3.6950 1.0582 18 7 5.5069 -3.7498 -0.7057 19 6 6.6403 -3.8685 0.1063 20 6 6.6757 -3.2476 1.3481 21 6 7.7936 -3.3725 2.1470 22 6 8.8817 -4.1143 1.7161 23 6 8.8494 -4.7337 0.4801 24 6 7.7298 -4.6119 -0.3239 25 6 10.1478 -5.4759 0.2457 26 6 11.1405 -4.8868 1.2701 27 6 10.2042 -4.3988 2.3959 28 1 -0.4849 0.8400 -0.0004 29 1 -0.2016 -1.4514 1.4928 30 1 -1.3459 -3.5523 2.0488 31 1 -0.4819 -5.6947 1.2018 32 1 1.5335 -5.7565 -0.2075 33 1 3.0821 -2.8038 -1.6643 34 1 3.0346 -4.5831 -1.6462 35 1 5.6041 -3.6957 -1.6693 36 1 5.8298 -2.6684 1.6879 37 1 7.8207 -2.8899 3.1128 38 1 7.7047 -5.0953 -1.2894 39 1 10.5046 -5.3025 -0.7695 40 1 10.0121 -6.5431 0.4211 41 1 11.6943 -4.0533 0.8381 42 1 11.8224 -5.6533 1.6385 43 1 10.5995 -3.4898 2.8494 44 1 10.0822 -5.1764 3.1500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776742685.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:07 Heat of formation + Delta-G solvation = -16.703887 kcal Electronic energy + Delta-G solvation = -25809.812183 eV Core-core repulsion = 22269.020997 eV Total energy + Delta-G solvation = -3540.791187 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.147 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65569 -40.44322 -39.20201 -37.01499 -35.52477 -34.79690 -33.42114 -32.12326 -31.35221 -29.63858 -28.55429 -27.72987 -26.78797 -23.68210 -23.18177 -22.81491 -21.66468 -21.41364 -20.79007 -19.11660 -18.38078 -17.77458 -17.28330 -16.74297 -16.62160 -16.28931 -16.19908 -15.68893 -15.46739 -15.06920 -15.03357 -14.41647 -14.39007 -14.18645 -13.71764 -13.65069 -13.57135 -13.38568 -12.92934 -12.81763 -12.78219 -12.70792 -12.56504 -12.50267 -12.14927 -11.97863 -11.89794 -11.77093 -11.35369 -11.23343 -11.04509 -11.00271 -10.70093 -9.69156 -9.24132 -9.19541 -8.90517 -8.60413 -6.31871 0.29705 0.42519 0.97043 1.11707 1.33751 1.44744 1.51619 1.73247 2.17428 2.19323 2.77055 2.80082 3.56673 3.69129 3.70984 4.01468 4.09429 4.23804 4.23974 4.36259 4.38187 4.39493 4.47590 4.59013 4.64884 4.70484 4.77199 4.77902 4.89961 4.98432 5.02915 5.07067 5.08451 5.17657 5.26588 5.36195 5.36736 5.41362 5.44926 5.53751 5.60241 5.68955 5.75604 6.02151 6.11311 6.15020 6.20655 6.39863 6.53295 6.72727 6.97243 7.09601 7.29908 8.34855 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014710 B = 0.003351 C = 0.002957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.018454 B = 8352.721385 C = 9466.459566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.036 3.964 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.481 4.481 8 H 0.070 0.930 9 C 0.096 3.904 10 C -0.195 4.195 11 C -0.117 4.117 12 C -0.243 4.243 13 C -0.091 4.091 14 C -0.189 4.189 15 C -0.066 4.066 16 C 0.515 3.485 17 O -0.550 6.550 18 N -0.668 5.668 19 C 0.135 3.865 20 C -0.150 4.150 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.088 4.088 24 C -0.134 4.134 25 C -0.077 4.077 26 C -0.114 4.114 27 C -0.080 4.080 28 H 0.286 0.714 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.103 0.897 34 H 0.119 0.881 35 H 0.425 0.575 36 H 0.105 0.895 37 H 0.126 0.874 38 H 0.149 0.851 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.053 -7.579 -3.564 21.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.178 4.178 3 Si 0.791 3.209 4 H -0.178 1.178 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.511 4.511 8 H 0.088 0.912 9 C 0.093 3.907 10 C -0.214 4.214 11 C -0.135 4.135 12 C -0.262 4.262 13 C -0.109 4.109 14 C -0.191 4.191 15 C -0.105 4.105 16 C 0.305 3.695 17 O -0.426 6.426 18 N -0.316 5.316 19 C 0.041 3.959 20 C -0.170 4.170 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.089 4.089 24 C -0.154 4.154 25 C -0.114 4.114 26 C -0.151 4.151 27 C -0.117 4.117 28 H 0.097 0.903 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.121 0.879 34 H 0.137 0.863 35 H 0.264 0.736 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.167 0.833 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.096 0.904 42 H 0.116 0.884 43 H 0.098 0.902 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 19.677 -7.414 -2.757 21.208 hybrid contribution -0.663 1.186 -0.008 1.358 sum 19.014 -6.229 -2.765 20.198 Atomic orbital electron populations 1.69872 1.08727 1.30178 1.36387 1.26650 0.95442 1.04126 0.91608 0.85389 0.78835 0.76866 0.79791 1.17811 1.19161 1.19496 1.19618 0.96676 0.91829 1.42949 0.91160 1.17733 0.91501 0.92782 0.88638 1.21379 1.00134 0.96937 1.02976 1.20962 0.99164 0.93392 1.00022 1.20724 1.01082 0.96785 1.07649 1.20743 0.95550 0.96628 0.97941 1.19492 0.99918 0.93455 1.06266 1.20290 0.88349 1.05163 0.96728 1.21465 0.84873 0.73926 0.89254 1.90676 1.86747 1.48085 1.17119 1.43501 1.03677 1.73399 1.10991 1.17806 0.87960 0.97550 0.92566 1.21151 0.98605 1.01399 0.95839 1.20641 0.92265 0.99470 0.99753 1.20957 0.96696 0.98512 0.96614 1.20808 0.96152 0.97821 0.94122 1.20529 0.92567 1.00117 1.02198 1.21119 0.89620 0.99386 1.01261 1.22321 0.96730 1.01456 0.94599 1.21116 0.90125 1.02044 0.98432 0.90337 0.88197 0.87713 0.86720 0.86514 0.87918 0.86292 0.73583 0.87739 0.85647 0.83330 0.89156 0.89158 0.90412 0.88409 0.90175 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.09 10.83 21.83 0.24 -43.85 16 2 C 0.04 1.87 5.20 85.26 0.44 2.31 16 3 Si 0.97 39.71 29.59 68.60 2.03 41.74 16 4 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 5 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 7 C -0.48 -26.18 8.17 23.46 0.19 -25.98 16 8 H 0.07 3.72 6.63 -2.91 -0.02 3.70 16 9 C 0.10 5.29 5.58 -21.29 -0.12 5.17 16 10 C -0.19 -10.91 8.69 22.73 0.20 -10.71 16 11 C -0.12 -5.85 10.02 22.22 0.22 -5.63 16 12 C -0.24 -11.21 10.05 22.46 0.23 -10.99 16 13 C -0.09 -4.10 9.66 22.22 0.21 -3.89 16 14 C -0.19 -9.13 4.43 -19.41 -0.09 -9.21 16 15 C -0.07 -2.49 5.18 29.10 0.15 -2.34 16 16 C 0.52 20.21 7.29 87.66 0.64 20.85 16 17 O -0.55 -27.13 13.51 -3.07 -0.04 -27.17 16 18 N -0.67 -20.12 5.34 -303.59 -1.62 -21.74 16 19 C 0.14 4.23 6.29 38.12 0.24 4.47 16 20 C -0.15 -5.36 8.69 22.36 0.19 -5.17 16 21 C -0.10 -3.06 10.03 22.28 0.22 -2.84 16 22 C -0.13 -3.06 6.14 -19.55 -0.12 -3.18 16 23 C -0.09 -1.95 6.13 -19.60 -0.12 -2.07 16 24 C -0.13 -3.23 9.96 22.42 0.22 -3.01 16 25 C -0.08 -1.06 6.77 30.52 0.21 -0.85 16 26 C -0.11 -1.30 7.08 31.50 0.22 -1.08 16 27 C -0.08 -1.30 6.77 30.52 0.21 -1.09 16 28 H 0.29 13.87 8.30 -92.71 -0.77 13.10 16 29 H 0.10 5.86 6.09 -2.91 -0.02 5.84 16 30 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 33 H 0.10 3.80 7.06 -2.39 -0.02 3.78 16 34 H 0.12 3.47 8.05 -2.38 -0.02 3.45 16 35 H 0.43 9.09 8.83 -92.70 -0.82 8.27 16 36 H 0.10 4.53 6.28 -2.91 -0.02 4.52 16 37 H 0.13 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.15 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -71.71 363.08 4.17 -67.54 By element: Atomic # 1 Polarization: 38.53 SS G_CDS: 0.21 Total: 38.74 kcal Atomic # 6 Polarization: -58.61 SS G_CDS: 3.36 Total: -55.25 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -1.38 Total: -65.59 kcal Atomic # 8 Polarization: -27.13 SS G_CDS: -0.04 Total: -27.17 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -71.71 4.17 -67.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776742685.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.833 kcal (2) G-P(sol) polarization free energy of solvation -71.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds