Wall clock time and date at job start Tue Mar 31 2020 13:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86806 * 119.99772 * 2 1 4 4 H 1.48500 * 109.47249 * 270.00331 * 3 2 1 5 5 H 1.48499 * 109.47144 * 30.00434 * 3 2 1 6 6 H 1.48499 * 109.46829 * 150.00345 * 3 2 1 7 7 C 1.38810 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00105 * 196.90614 * 7 2 1 9 9 N 1.36939 * 119.99894 * 16.90199 * 7 2 1 10 10 C 1.47146 * 120.98180 * 206.25281 * 9 7 2 11 11 C 1.53297 * 108.38341 * 230.51331 * 10 9 7 12 12 O 1.42951 * 109.26517 * 307.71813 * 11 10 9 13 13 C 1.42962 * 114.16686 * 62.50377 * 12 11 10 14 14 H 1.08997 * 109.51877 * 57.44827 * 13 12 11 15 15 C 1.52997 * 109.51385 * 177.55222 * 13 12 11 16 16 N 1.46503 * 109.47174 * 299.89337 * 15 13 12 17 17 C 1.34774 * 120.00271 * 179.97438 * 16 15 13 18 18 O 1.21605 * 120.00090 * 0.02562 * 17 16 15 19 19 C 1.47391 * 120.00151 * 180.02562 * 17 16 15 20 20 C 1.37367 * 128.56567 * 0.16297 * 19 17 16 21 21 O 1.33493 * 106.34042 * 180.23686 * 20 19 17 22 22 N 1.20651 * 113.15892 * 359.74217 * 21 20 19 23 23 C 1.30015 * 112.30111 * 359.97438 * 22 21 20 24 24 C 1.50703 * 127.33474 * 179.97438 * 23 22 21 25 25 C 1.53005 * 117.49958 * 8.65465 * 24 23 22 26 26 C 1.52994 * 117.50026 * 300.02858 * 24 23 22 27 27 C 1.47155 * 120.98170 * 26.22846 * 9 7 2 28 28 H 0.97001 * 120.00065 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.68413 * 350.23535 * 10 9 7 30 30 H 1.09005 * 109.68445 * 110.74986 * 10 9 7 31 31 H 1.08997 * 109.51522 * 67.62273 * 11 10 9 32 32 H 1.09006 * 109.51026 * 187.71949 * 11 10 9 33 33 H 1.09005 * 109.47249 * 179.89423 * 15 13 12 34 34 H 1.09001 * 109.47686 * 59.89649 * 15 13 12 35 35 H 0.96998 * 119.99552 * 359.97438 * 16 15 13 36 36 H 1.08003 * 126.82479 * 359.97438 * 20 19 17 37 37 H 1.09004 * 115.54727 * 154.35598 * 24 23 22 38 38 H 1.08998 * 117.49674 * 359.97438 * 25 24 23 39 39 H 1.08991 * 117.49878 * 145.01722 * 25 24 23 40 40 H 1.09003 * 117.49973 * 214.97294 * 26 24 23 41 41 H 1.09000 * 117.50201 * 359.97438 * 26 24 23 42 42 H 1.08997 * 109.67711 * 9.76202 * 27 9 7 43 43 H 1.08999 * 109.68374 * 249.21001 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2224 0.2714 9 7 1.3700 -2.3623 -0.3459 10 6 1.8341 -3.6633 0.1612 11 6 1.9812 -4.6207 -1.0269 12 8 0.7654 -4.6296 -1.7789 13 6 0.4242 -3.3663 -2.3547 14 1 1.2369 -3.0276 -2.9973 15 6 -0.8549 -3.5104 -3.1816 16 7 -0.6379 -4.4887 -4.2504 17 6 -1.6344 -4.7801 -5.1098 18 8 -2.7135 -4.2307 -4.9984 19 6 -1.4162 -5.7647 -6.1846 20 6 -0.2816 -6.4851 -6.4687 21 8 -0.5709 -7.2370 -7.5332 22 7 -1.7005 -7.0849 -7.9288 23 6 -2.3609 -6.2213 -7.2157 24 6 -3.7879 -5.7770 -7.4090 25 6 -4.6322 -6.5379 -8.4332 26 6 -4.1487 -5.1196 -8.7426 27 6 0.1973 -2.3446 -1.2346 28 1 -0.4850 0.8400 0.0004 29 1 2.7976 -3.5420 0.6564 30 1 1.1062 -4.0629 0.8675 31 1 2.8001 -4.2871 -1.6642 32 1 2.1910 -5.6258 -0.6608 33 1 -1.1155 -2.5465 -3.6188 34 1 -1.6672 -3.8491 -2.5385 35 1 0.2230 -4.9266 -4.3395 36 1 0.6588 -6.4472 -5.9391 37 1 -4.2912 -5.4099 -6.5144 38 1 -4.1554 -7.3596 -8.9675 39 1 -5.6912 -6.6717 -8.2126 40 1 -4.8897 -4.3205 -8.7256 41 1 -3.3539 -5.0081 -9.4801 42 1 0.0769 -1.3499 -1.6637 43 1 -0.6957 -2.6117 -0.6694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035506637.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:00 Heat of formation + Delta-G solvation = 33.433069 kcal Electronic energy + Delta-G solvation = -26798.588316 eV Core-core repulsion = 22849.121967 eV Total energy + Delta-G solvation = -3949.466348 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.14370 -39.62073 -38.47665 -37.66075 -34.91647 -34.39662 -33.46393 -32.24848 -31.37781 -30.80890 -27.55182 -26.13106 -24.68006 -24.18869 -23.33260 -22.63497 -21.78351 -20.90626 -20.29593 -19.72076 -18.44366 -17.90815 -17.08654 -16.80776 -16.10537 -15.86391 -15.69217 -15.21715 -14.95308 -14.70891 -14.39753 -14.21712 -13.97954 -13.55083 -13.29850 -13.01213 -12.87850 -12.36120 -12.32165 -11.91713 -11.85813 -11.61273 -11.52036 -11.16058 -10.90480 -10.80665 -10.69776 -10.49275 -10.30669 -10.16942 -10.01759 -9.98222 -9.76060 -9.73012 -9.17430 -8.99429 -8.61165 -6.82877 -5.90494 -3.34625 0.85591 1.50532 2.68916 3.12706 3.16275 3.30878 3.37837 3.39372 3.58316 3.74549 3.99587 4.16424 4.38450 4.60154 4.65464 4.74480 4.79417 4.87573 5.10100 5.25375 5.29676 5.37354 5.45698 5.51235 5.52920 5.67563 5.77963 5.84521 5.85451 5.92395 5.95204 6.03703 6.14422 6.27168 6.41160 6.52796 6.71470 6.99313 7.40377 7.47128 7.65081 7.74869 7.95648 8.16161 8.26797 9.04554 9.67376 10.23994 11.17599 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019844 B = 0.002672 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.696220 B =10477.277586 C =11272.031248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.003 3.997 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.594 5.594 10 C 0.108 3.892 11 C 0.050 3.950 12 O -0.391 6.391 13 C 0.054 3.946 14 H 0.057 0.943 15 C 0.134 3.866 16 N -0.711 5.711 17 C 0.590 3.410 18 O -0.529 6.529 19 C -0.242 4.242 20 C -0.008 4.008 21 O 0.097 5.903 22 N -0.360 5.360 23 C 0.101 3.899 24 C -0.085 4.085 25 C -0.166 4.166 26 C -0.158 4.158 27 C 0.153 3.847 28 H 0.257 0.743 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.400 0.600 36 H 0.227 0.773 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 -13.187 -14.101 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.196 4.196 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.318 5.318 10 C -0.018 4.018 11 C -0.028 4.028 12 O -0.310 6.310 13 C -0.005 4.005 14 H 0.075 0.925 15 C 0.010 3.990 16 N -0.362 5.362 17 C 0.376 3.624 18 O -0.407 6.407 19 C -0.249 4.249 20 C -0.090 4.090 21 O 0.038 5.962 22 N -0.066 5.066 23 C -0.061 4.061 24 C -0.104 4.104 25 C -0.204 4.204 26 C -0.196 4.196 27 C 0.026 3.974 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.234 0.766 36 H 0.244 0.756 37 H 0.158 0.842 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -2.814 -13.533 -15.037 20.424 hybrid contribution 1.214 1.432 0.895 2.080 sum -1.600 -12.100 -14.142 18.681 Atomic orbital electron populations 1.70013 1.05243 1.25847 1.53404 1.25069 0.95373 0.98544 1.00587 0.86242 0.79072 0.83390 0.77773 1.21313 1.21611 1.20391 1.19195 0.92667 0.84454 1.42394 0.91289 1.44051 1.33713 1.01397 1.52645 1.21605 0.98676 0.87541 0.93968 1.23008 0.86085 0.99664 0.94017 1.87769 1.42320 1.31460 1.69477 1.23163 0.94899 0.86551 0.95897 0.92523 1.21491 0.97993 0.92206 0.87272 1.45790 1.15015 1.44333 1.31039 1.16811 0.84428 0.80892 0.80304 1.90797 1.24724 1.52203 1.72933 1.22353 0.94557 1.05512 1.02465 1.26452 1.00584 0.91861 0.90097 1.84571 1.23850 1.51271 1.36533 1.73604 0.92237 1.19233 1.21569 1.23845 0.96835 0.93908 0.91527 1.20384 0.88049 1.05603 0.96407 1.23049 0.99968 0.95626 1.01735 1.23018 1.03475 0.96393 0.96691 1.21308 0.89536 0.97590 0.88980 0.93342 0.91940 0.95521 0.93837 0.89959 0.89633 0.90375 0.76559 0.75636 0.84205 0.88153 0.87826 0.87610 0.88686 0.88522 0.94992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.29 11.14 55.49 0.62 -24.67 16 2 C 0.00 0.09 4.95 -17.43 -0.09 0.00 16 3 Si 0.91 20.96 29.59 -169.99 -5.03 15.93 16 4 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.26 -6.79 9.65 -15.06 -0.15 -6.94 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 9 N -0.59 -14.29 3.05 -171.82 -0.52 -14.81 16 10 C 0.11 2.15 6.74 -3.54 -0.02 2.13 16 11 C 0.05 0.81 6.98 37.31 0.26 1.08 16 12 O -0.39 -6.71 10.14 -35.23 -0.36 -7.06 16 13 C 0.05 0.96 2.86 -26.58 -0.08 0.88 16 14 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 15 C 0.13 2.11 5.37 -4.04 -0.02 2.09 16 16 N -0.71 -9.31 5.45 -61.39 -0.33 -9.65 16 17 C 0.59 8.42 7.81 -12.54 -0.10 8.32 16 18 O -0.53 -9.30 15.81 5.27 0.08 -9.21 16 19 C -0.24 -2.88 6.47 -102.89 -0.67 -3.54 16 20 C -0.01 -0.06 11.85 30.42 0.36 0.30 16 21 O 0.10 0.98 11.06 18.65 0.21 1.19 16 22 N -0.36 -4.33 11.71 34.78 0.41 -3.92 16 23 C 0.10 1.26 7.07 -79.77 -0.56 0.69 16 24 C -0.09 -0.98 5.89 -91.77 -0.54 -1.52 16 25 C -0.17 -1.52 10.16 -26.73 -0.27 -1.80 16 26 C -0.16 -1.50 10.23 -26.73 -0.27 -1.78 16 27 C 0.15 3.44 4.73 -3.53 -0.02 3.43 16 28 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 29 H 0.06 1.18 7.96 -51.92 -0.41 0.76 16 30 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.40 4.18 7.54 -40.82 -0.31 3.88 16 36 H 0.23 0.87 7.68 -52.48 -0.40 0.47 16 37 H 0.14 1.74 7.30 -51.93 -0.38 1.36 16 38 H 0.10 0.95 7.97 -51.93 -0.41 0.54 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.10 2.42 6.14 -51.93 -0.32 2.10 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 362.24 15.07 5.46 5.46 Total: -1.00 -32.02 362.24 -7.65 -39.67 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -6.01 Total: 3.73 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -2.16 Total: 3.35 kcal Atomic # 7 Polarization: -53.22 SS G_CDS: 0.17 Total: -53.05 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -0.07 Total: -15.08 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.93 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.02 -7.65 -39.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035506637.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.099 kcal (2) G-P(sol) polarization free energy of solvation -32.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds